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authorRicardo Wurmus <rekado@elephly.net>2017-01-16 11:59:41 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-01-17 21:46:48 +0100
commit1f40e73cb52293d0ff429703136235398129887f (patch)
tree4d44157d68c8ffe195677aae448a1f2fabcc6633 /gnu/packages
parentfb1e528ef1edca46ba4152b88356266944982ebe (diff)
downloadguix-1f40e73cb52293d0ff429703136235398129887f.tar
guix-1f40e73cb52293d0ff429703136235398129887f.tar.gz
gnu: Add r-raremetals2.
* gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 28a0da80e8..743e8fdce9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8171,3 +8171,34 @@ unmodeled, or latent sources of noise.")
data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.")
;; Any version of the GPL is acceptable
(license (list license:gpl2+ license:gpl3+))))
+
+(define-public r-raremetals2
+ (package
+ (name "r-raremetals2")
+ (version "0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://genome.sph.umich.edu/w/images/"
+ "b/b7/RareMETALS2_" version ".tar.gz"))
+ (sha256
+ (base32
+ "0z5ljcgvnm06ja9lm85a3cniq7slxcy37aqqkxrdidr79an5fs4s"))))
+ (properties `((upstream-name . "RareMETALS2")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-seqminer" ,r-seqminer)
+ ("r-mvtnorm" ,r-mvtnorm)
+ ("r-compquadform" ,r-compquadform)
+ ("r-getopt" ,r-getopt)))
+ (home-page "http://genome.sph.umich.edu/wiki/RareMETALS2")
+ (synopsis "Analyze gene-level association tests for binary trait")
+ (description
+ "The R package rareMETALS2 is an extension of the R package rareMETALS.
+It was designed to meta-analyze gene-level association tests for binary trait.
+While rareMETALS offers a near-complete solution for meta-analysis of
+gene-level tests for quantitative trait, it does not offer the optimal
+solution for binary trait. The package rareMETALS2 offers improved features
+for analyzing gene-level association tests in meta-analyses for binary
+trait.")
+ (license license:gpl3)))