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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-10-21 12:36:53 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-10-21 23:06:45 +0200 |
| commit | f5cec0068a7e6f9ca1b7542d1839b832ee057648 (patch) | |
| tree | 21ab1ca0687502239c0392ca69420a96e9329702 /gnu/packages | |
| parent | 2ba2d62c69409255e0c00c480c424c668cba845f (diff) | |
| download | guix-f5cec0068a7e6f9ca1b7542d1839b832ee057648.tar guix-f5cec0068a7e6f9ca1b7542d1839b832ee057648.tar.gz | |
gnu: Add python-bx-python.
* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 12 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index dee8a975b9..7cd9172446 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1474,9 +1474,9 @@ the original BWA alignment program and shares the genome index structure as well as many of the command line options.") (license license:gpl3+))) -(define-public python2-bx-python +(define-public python-bx-python (package - (name "python2-bx-python") + (name "python-bx-python") (version "0.8.2") (source (origin (method url-fetch) @@ -1485,18 +1485,17 @@ well as many of the command line options.") (base32 "11kksg2rbzihpmcid823xvg42xi88m7sz58rzk29abybkxy0rszs")))) (build-system python-build-system) - (arguments - `(#:tests? #f ;tests fail because test data are not included - #:python ,python-2)) + ;; Tests fail because test data are not included + (arguments '(#:tests? #f)) (propagated-inputs - `(("python-numpy" ,python2-numpy) - ("python-six" ,python2-six))) + `(("python-numpy" ,python-numpy) + ("python-six" ,python-six))) (inputs `(("zlib" ,zlib))) (native-inputs - `(("python-lzo" ,python2-lzo) - ("python-nose" ,python2-nose) - ("python-cython" ,python2-cython))) + `(("python-lzo" ,python-lzo) + ("python-nose" ,python-nose) + ("python-cython" ,python-cython))) (home-page "https://github.com/bxlab/bx-python") (synopsis "Tools for manipulating biological data") (description @@ -1504,6 +1503,9 @@ well as many of the command line options.") multiple sequence alignments.") (license license:expat))) +(define-public python2-bx-python + (package-with-python2 python-bx-python)) + (define-public python-pysam (package (name "python-pysam") |