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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-02-18 15:35:38 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-02-18 15:35:38 +0100 |
| commit | 2def2e203f51fd6448267d87085a3ab95663c7a8 (patch) | |
| tree | a382683c6eb604f290b5dcd48db2556e2319b545 /gnu/packages | |
| parent | e6bc150b0c8a72da115ba3243031215137991761 (diff) | |
| download | guix-2def2e203f51fd6448267d87085a3ab95663c7a8.tar guix-2def2e203f51fd6448267d87085a3ab95663c7a8.tar.gz | |
gnu: Add r-tfbstools.
* gnu/packages/bioconductor.scm (r-tfbstools): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 38a34912ef..4e8b92841c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8926,6 +8926,52 @@ advanced visualization of sets of conserved noncoding elements.") (license:non-copyleft "https://raw.githubusercontent.com/ucscGenomeBrowser/kent/v410_base/src/lib/LICENSE"))))) +(define-public r-tfbstools + (package + (name "r-tfbstools") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "TFBSTools" version)) + (sha256 + (base32 + "0p42hnwhipmcvrsqk3s8qfiian1fvh6izfd9m961bsx99r2clnha")))) + (properties `((upstream-name . "TFBSTools"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-catools" ,r-catools) + ("r-cner" ,r-cner) + ("r-dbi" ,r-dbi) + ("r-dirichletmultinomial" ,r-dirichletmultinomial) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-gtools" ,r-gtools) + ("r-iranges" ,r-iranges) + ("r-rsqlite" ,r-rsqlite) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-seqlogo" ,r-seqlogo) + ("r-tfmpvalue" ,r-tfmpvalue) + ("r-xml" ,r-xml) + ("r-xvector" ,r-xvector))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/ge11232002/TFBSTools") + (synopsis "Transcription factor binding site (TFBS) analysis") + (description + "TFBSTools is a package for the analysis and manipulation of +transcription factor binding sites. It includes matrices conversion +between @dfn{Position Frequency Matrix} (PFM), @dfn{Position Weight +Matrix} (PWM) and @dfn{Information Content Matrix} (ICM). It can also +scan putative TFBS from sequence/alignment, query JASPAR database and +provides a wrapper of de novo motif discovery software.") + (license license:gpl2))) + (define-public r-singlecellexperiment (package (name "r-singlecellexperiment") |