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| author | Ludovic Courtès <ludovic.courtes@inria.fr> | 2019-06-18 16:51:22 +0200 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2019-06-18 16:51:22 +0200 |
| commit | 0c212811ac5cdfd6bcdfd4e7eb82571bbd6e33d5 (patch) | |
| tree | f09f6429eddc0ad59cb1318db9bfffdbebfbd135 /gnu/packages | |
| parent | b95ccbaf61eb4108b00986f5d6996185e8887112 (diff) | |
| download | guix-0c212811ac5cdfd6bcdfd4e7eb82571bbd6e33d5.tar guix-0c212811ac5cdfd6bcdfd4e7eb82571bbd6e33d5.tar.gz | |
gnu: Add python-slurm-magic.
* gnu/packages/parallel.scm (python-slurm-magic): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/parallel.scm | 53 |
1 files changed, 52 insertions, 1 deletions
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm index 94c844eec9..cdc35b4703 100644 --- a/gnu/packages/parallel.scm +++ b/gnu/packages/parallel.scm @@ -9,6 +9,7 @@ ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org> +;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -26,8 +27,10 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu packages parallel) - #:use-module (guix build-system gnu) #:use-module (guix download) + #:use-module (guix git-download) + #:use-module (guix build-system gnu) + #:use-module (guix build-system python) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (gnu packages) @@ -40,6 +43,7 @@ #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-xyz) #:use-module (gnu packages readline) #:use-module (gnu packages tcl) #:use-module (gnu packages tls) @@ -188,3 +192,50 @@ to SLURM. Using DRMAA, grid applications builders, portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.") (license license:gpl3+))) + +(define-public python-slurm-magic + (let ((commit "73dd1a2b85799f7dae4b3f1cd9027536eff0c4d7") + (revision "0")) + (package + (name "python-slurm-magic") + (version (git-version "0.0" revision commit)) + (home-page "https://github.com/NERSC/slurm-magic") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) + (commit commit))) + (sha256 + (base32 + "19pp2vs0wm8mx0arz9n6lw9wgyv70w9wyi4y6b91qc5j3bz5igfs")) + (file-name (git-file-name name version)))) + (build-system python-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (add-before 'build 'set-slurm-path + (lambda* (#:key inputs #:allow-other-keys) + ;; The '_execute' method tries to exec 'salloc' + ;; etc. from $PATH. Record the absolute file name + ;; instead. + (let ((slurm (assoc-ref inputs "slurm"))) + (substitute* "slurm_magic.py" + (("name = (.*)$" _ value) + (string-append "name = \"" + slurm "/bin/\" + " + value "\n"))) + #t)))))) + (inputs + `(("slurm" ,slurm))) + (propagated-inputs + `(("python-ipython" ,python-ipython) + ("python-pandas" ,python-pandas))) + (synopsis "Control the SLURM batch scheduler from Jupyter Notebook") + (description + "This package implements Jupyter/IPython +@uref{http://ipython.readthedocs.io/en/stable/interactive/magics.html, magic +commands} for interacting with the SLURM workload manager. SLURM magic simply +wraps command-line executables and the commands themselves should look like +their command-line counterparts. Commands are spawned via @code{subprocess} +and output captured in the notebook. Whatever arguments are accepted by a +SLURM command line executable are also accepted by the corresponding magic +command---e.g., @code{%salloc}, @code{%sbatch}, etc.") + (license license:bsd-3)))) |