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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-05-02 10:14:19 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-05-02 10:14:37 +0200 |
| commit | 3f8c4899a9a67bb509a603bd21dcfcfab88c0e8e (patch) | |
| tree | 178ed860e4523026ac8e5d76415421ef20269f13 /gnu/packages | |
| parent | 9bb428ad681bd2f779dd52db41d0f4112efab912 (diff) | |
| download | guix-3f8c4899a9a67bb509a603bd21dcfcfab88c0e8e.tar guix-3f8c4899a9a67bb509a603bd21dcfcfab88c0e8e.tar.gz | |
gnu: Add r-ggpicrust2.
* gnu/packages/bioconductor.scm (r-ggpicrust2): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 75605945ae..768b55b25e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10179,6 +10179,50 @@ expressed genes in DNA microarray experiments.") fitting of some classes of graphical Markov models.") (license license:gpl2+))) +;; This is a CRAN package, but it depends on a bunch of Bioconductor packages. +(define-public r-ggpicrust2 + (package + (name "r-ggpicrust2") + (version "1.6.0") + (source (origin + (method url-fetch) + (uri (cran-uri "ggpicrust2" version)) + (sha256 + (base32 + "1ghzwhd2jmdz18klyzyia84w1s9j3ccszldvfy3vpndppyg7cyh1")))) + (properties `((upstream-name . "ggpicrust2"))) + (build-system r-build-system) + (propagated-inputs (list r-aldex2 + r-aplot + r-deseq2 + r-dplyr + r-edger + r-ggally + r-ggplot2 + r-ggprism + r-lefser + r-limma + r-maaslin2 + r-metagenomeseq + r-microbiomestat + r-patchwork + r-phyloseq + r-readr + r-summarizedexperiment + r-tibble + r-tidyr)) + (home-page "https://github.com/cafferychen777/ggpicrust2") + (synopsis "Make PICRUSt2 output analysis and visualization easier") + (description + "This package provides a convenient way to analyze and visualize PICRUSt2 +output with pre-defined plots and functions. It allows for generating +statistical plots about microbiome functional predictions and offers +customization options. It features a one-click option for creating +publication-level plots, saving time and effort in producing +professional-grade figures. It streamlines the PICRUSt2 analysis and +visualization process.") + (license license:expat))) + ;; This is a CRAN package, but it depends on a Bioconductor package, r-graph. (define-public r-perfmeas (package |