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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-02-12 12:58:11 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-02-16 16:35:41 +0100
commitcb7e486797df42bb971178918e84741ced3e6528 (patch)
tree18ab0b0e2d3c11a28caa0046c2e61a54f1464932 /gnu/packages/statistics.scm
parentd3d656c5fbd9345e7f9d62564a06d1672300625c (diff)
downloadguix-cb7e486797df42bb971178918e84741ced3e6528.tar
guix-cb7e486797df42bb971178918e84741ced3e6528.tar.gz
gnu: Add R.
* gnu/packages/statistics.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it * guix/download.scm (%mirrors): Add CRAN mirrors.
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+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages statistics)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix utils)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages gtk)
+ #:use-module (gnu packages icu4c)
+ #:use-module (gnu packages image)
+ #:use-module (gnu packages java)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages pcre)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages readline)
+ #:use-module (gnu packages texlive)
+ #:use-module (gnu packages texinfo)
+ #:use-module (gnu packages which)
+ #:use-module (gnu packages xorg))
+
+(define-public r
+ (package
+ (name "r")
+ (version "3.1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://cran/src/base/R-"
+ (version-prefix version 1) "/R-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0ypsm11c7n49pgh2ricyhhpfhas3famscdazzdp2zq70rapm1ldw"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:phases
+ (alist-cons-before
+ 'check 'set-timezone
+ ;; Some tests require the timezone to be set.
+ (lambda _ (setenv "TZ" "UTC"))
+ %standard-phases)
+ #:configure-flags
+ '("--with-blas"
+ "--with-lapack"
+ "--with-cairo"
+ "--with-libpng"
+ "--with-jpeglib"
+ "--with-libtiff"
+ "--with-ICU"
+ "--enable-R-shlib"
+ "--enable-BLAS-shlib"
+ "--with-system-zlib"
+ "--with-system-bzlib"
+ "--with-system-pcre"
+ "--with-system-tre"
+ "--with-system-xz")))
+ (native-inputs
+ `(("bzip2" ,bzip2)
+ ("perl" ,perl)
+ ("pkg-config" ,pkg-config)
+ ("texlive" ,texlive) ; needed to make vignettes
+ ("texinfo" ,texinfo) ; for building HTML manuals
+ ("which" ,which) ; for tests/Examples/base-Ex.R
+ ("xz" ,xz)))
+ (inputs
+ `(("atlas" ,atlas) ; --with-blas
+ ("cairo" ,cairo)
+ ("gfortran" ,gfortran-4.8)
+ ("icu4c" ,icu4c)
+ ("icedtea6" ,icedtea6)
+ ("lapack" ,lapack)
+ ("libjpeg" ,libjpeg)
+ ("libpng" ,libpng)
+ ("libtiff" ,libtiff)
+ ("libxt" ,libxt)
+ ("pcre" ,pcre)
+ ("readline" ,readline)
+ ("zlib" ,zlib)))
+ (home-page "http://www.r-project.org/")
+ (synopsis "Environment for statistical computing and graphics")
+ (description
+ "R is a language and environment for statistical computing and graphics.
+It provides a variety of statistical techniques, such as linear and nonlinear
+modeling, classical statistical tests, time-series analysis, classification
+and clustering. It also provides robust support for producing
+publication-quality data plots. A large amount of 3rd-party packages are
+available, greatly increasing its breadth and scope.")
+ (license license:gpl3+)))