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authorMark H Weaver <mhw@netris.org>2018-04-30 04:03:54 -0400
committerMark H Weaver <mhw@netris.org>2018-04-30 04:03:54 -0400
commit3d5ad159b336a9903b31d0be7ae052dbc8d5bfcc (patch)
treeee7dce4e436490a1db5f18e4bfad55511d2fff32 /gnu/packages/statistics.scm
parentc77835db04ee20c0afe20600dc8f91a67bc2421e (diff)
parent8c21c64e59d3f4d223d8aeef91f06fdde7de1ab7 (diff)
downloadguix-3d5ad159b336a9903b31d0be7ae052dbc8d5bfcc.tar
guix-3d5ad159b336a9903b31d0be7ae052dbc8d5bfcc.tar.gz
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/statistics.scm')
-rw-r--r--gnu/packages/statistics.scm105
1 files changed, 60 insertions, 45 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5069ef7c5d..51f5ad91b1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -361,14 +361,14 @@ k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.")
(define-public r-cluster
(package
(name "r-cluster")
- (version "2.0.7")
+ (version "2.0.7-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "cluster" version))
(sha256
(base32
- "0nf2hnsv5rhw6399b4gk1rj5c8hfc6ajfnkh3qbwfx3cz4asrg45"))))
+ "1grxbifbc4nwig25dmjgkympnbzb4al0w6k1c0ibdhpk1h4l20di"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
@@ -402,14 +402,14 @@ code for possible problems.")
(define-public r-foreign
(package
(name "r-foreign")
- (version "0.8-69")
+ (version "0.8-70")
(source
(origin
(method url-fetch)
(uri (cran-uri "foreign" version))
(sha256
(base32
- "0s1lxmd85dd0kxx8hwk02w9l7pmpk4bpy7787fbyh2dbq5g9ys0k"))))
+ "11mql8q3i1q593dvd351fhvkvfab25li80d1ahl4xjjzy52qdkc6"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/foreign")
(synopsis "Read data stored by other statistics software")
@@ -488,14 +488,14 @@ and operations on them using LAPACK and SuiteSparse.")
(define-public r-nlme
(package
(name "r-nlme")
- (version "3.1-131.1")
+ (version "3.1-137")
(source
(origin
(method url-fetch)
(uri (cran-uri "nlme" version))
(sha256
(base32
- "1xafi670a9jzb52kqxkacxfmy0viac3aql5byfq86kgkgla2sg0y"))))
+ "11vyxxc0n36vb8d8g02zr0402ymicvbifwdsqm7gy9iqqnwrn101"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -593,14 +593,14 @@ analysis.")
(define-public r-survival
(package
(name "r-survival")
- (version "2.41-3")
+ (version "2.42-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "survival" version))
(sha256
(base32
- "07cnr0hnki6ybbjll54l4s5lllhk19vni5f8m0mvsfp99ls7qygk"))))
+ "15pasbfzmg2r5bfpsadp9ia4cpybqz6n1kwm7ma02ykzf7bk4xx0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@@ -2694,13 +2694,13 @@ a column in data frame.")
(define-public r-rsqlite
(package
(name "r-rsqlite")
- (version "2.0")
+ (version "2.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RSQLite" version))
(sha256
(base32
- "1xpg1i1jkzkzv44k512k90c2vvl960pl2d4a3spwcha6yclyc3vz"))))
+ "0hknfqcgijdapx1ryy20zy68qmm8wsb1hjx4n4hmkgl552z82q5d"))))
(properties `((upstream-name . "RSQLite")))
(build-system r-build-system)
(propagated-inputs
@@ -2766,13 +2766,13 @@ ldap, and also supports cookies, redirects, authentication, etc.")
(define-public r-xml
(package
(name "r-xml")
- (version "3.98-1.10")
+ (version "3.98-1.11")
(source (origin
(method url-fetch)
(uri (cran-uri "XML" version))
(sha256
(base32
- "1faza9bbllp67lf1yv1sllxc3iv8llz52m9diazhq322iqbh97m1"))))
+ "18izvlg2x9mzr6yb3yf02ghwbyn00frki3av4lpc44r22m4djnsh"))))
(properties
`((upstream-name . "XML")))
(build-system r-build-system)
@@ -2820,28 +2820,17 @@ plotted and compared with the asymptotic curve.")
(define-public r-lambda-r
(package
(name "r-lambda-r")
- (version "1.2")
+ (version "1.2.2")
(source (origin
(method url-fetch)
(uri (cran-uri "lambda.r" version))
(sha256
(base32
- "0vql32np716dpd0kjn7s7wgawd02ysgp2a5il4kb19nlw661ii3x"))))
+ "05cfaq9dbgdnmmj3d6ggmsw300qgiw8k7f6h6k0ylv63cf3v6pkq"))))
(properties `((upstream-name . "lambda.r")))
(build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'check 'delete-test-log
- ;; The test report contains time stamps and is not important for
- ;; the installed package.
- (lambda* (#:key outputs #:allow-other-keys)
- (delete-file-recursively
- (string-append (assoc-ref outputs "out")
- "/site-library/lambda.r/unitTests"))
- #t)))))
- (native-inputs
- `(("r-runit" ,r-runit)))
+ (propagated-inputs
+ `(("r-formatr" ,r-formatr)))
(home-page "https://cran.r-project.org/web/packages/lambda.r")
(synopsis "Functional programming extension for R")
(description
@@ -2854,13 +2843,13 @@ safety.")
(define-public r-futile-options
(package
(name "r-futile-options")
- (version "1.0.0")
+ (version "1.0.1")
(source (origin
(method url-fetch)
(uri (cran-uri "futile.options" version))
(sha256
(base32
- "1hp82h6xqq5cck67h7lpf22n3j7mg3v1mla5y5ivnzrrb7iyr17f"))))
+ "0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"))))
(properties
`((upstream-name . "futile.options")))
(build-system r-build-system)
@@ -3410,13 +3399,13 @@ want to migrate to S4.")
(define-public r-r-oo
(package
(name "r-r-oo")
- (version "1.21.0")
+ (version "1.22.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R.oo" version))
(sha256
(base32
- "0723gxjazgqq7v3lwnl7axw3brzcnizvhbd71ijkkv8mz31fwp34"))))
+ "0k6xwy93fpb2p7bs76lzk52br9rv5xnd9524xj8qyazv1132x1n0"))))
(properties `((upstream-name . "R.oo")))
(build-system r-build-system)
(propagated-inputs
@@ -4222,13 +4211,13 @@ series of numeric vectors/matrices and factors.")
(define-public r-ztable
(package
(name "r-ztable")
- (version "0.1.5")
+ (version "0.1.8")
(source (origin
(method url-fetch)
(uri (cran-uri "ztable" version))
(sha256
(base32
- "1jfqnqy9544gfvz3bsb48v4177nwp4b4n9l2743asq8sbq305b5r"))))
+ "1hk5k9614n52dpfrhdws06w4gvwhnz8q47x4cwxx88qmrzm8z2m3"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/ztable")
(synopsis "Zebra-striped tables in LaTeX and HTML formats for R")
@@ -4281,14 +4270,14 @@ closely-packed, non-overlapping points.")
(define-public r-sourcetools
(package
(name "r-sourcetools")
- (version "0.1.6")
+ (version "0.1.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "sourcetools" version))
(sha256
(base32
- "0l8c6fql82cb246qh7hfgxb4s35qn0qfgy6dzvkx0zkz1cpqvx69"))))
+ "1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/sourcetools")
(synopsis "Tools for reading, tokenizing and parsing R code")
@@ -4697,14 +4686,14 @@ can be efficiently implemented directly in the R language.")
(define-public r-robustbase
(package
(name "r-robustbase")
- (version "0.92-8")
+ (version "0.93-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "robustbase" version))
(sha256
(base32
- "080ynchq8pvhnmbivj4fp74n0x9lyr9923sg0s9gq5irgm68kgxw"))))
+ "130pzibn5cb8mycv8byc6npzcpddghz8m7jqwk15qmx4g3cj8zgy"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
@@ -5071,14 +5060,14 @@ algorithms.")
(define-public r-lme4
(package
(name "r-lme4")
- (version "1.1-16")
+ (version "1.1-17")
(source
(origin
(method url-fetch)
(uri (cran-uri "lme4" version))
(sha256
(base32
- "0p5x9ki4dq8058mc7k9wdnlh60z1xa3wk2nmf71wl7w59m4szh92"))))
+ "0czwdy1s8h3slaw73pz0h8qmqczf5135fz6i46i2dv1ql2pbq49x"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
@@ -5123,24 +5112,50 @@ modification of F-tests for linear mixed effects models and a parametric
bootstrap test for generalized linear mixed models.")
(license license:gpl2+)))
+(define-public r-cardata
+ (package
+ (name "r-cardata")
+ (version "3.0-1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "carData" version))
+ (sha256
+ (base32
+ "193pdwgw6gk19v7swk1kwphg3vqdmpsgi555g9nyz93sa39j7r8j"))))
+ (properties `((upstream-name . "carData")))
+ (build-system r-build-system)
+ (home-page "https://r-forge.r-project.org/projects/car/")
+ (synopsis "Data Sets for the book Companion to Applied Regression")
+ (description
+ "This package provides datasets to accompany J. Fox and S. Weisberg, An R
+Companion to Applied Regression, Third Edition, Sage.")
+ (license license:gpl2+)))
+
(define-public r-car
(package
(name "r-car")
- (version "2.1-6")
+ (version "3.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "car" version))
(sha256
(base32
- "14l4d9j87xnb0bz2wgqqbxnlnbcdfb5vx2fw6kdxj91kyrk6lhnj"))))
+ "1ks2jaav8lbxhzw56vpbnysjk3pvpmqh6avd574k0bha1226k81h"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-mass" ,r-mass)
+ `(("r-abind" ,r-abind)
+ ("r-cardata" ,r-cardata)
+ ("r-lme4" ,r-lme4)
+ ("r-maptools" ,r-maptools)
+ ("r-mass" ,r-mass)
("r-mgcv" ,r-mgcv)
+ ("r-nlme" ,r-nlme)
("r-nnet" ,r-nnet)
("r-pbkrtest" ,r-pbkrtest)
- ("r-quantreg" ,r-quantreg)))
+ ("r-quantreg" ,r-quantreg)
+ ("r-rio" ,r-rio)))
(home-page "https://r-forge.r-project.org/projects/car/")
(synopsis "Companion to applied regression")
(description
@@ -5247,14 +5262,14 @@ first and second order derivatives.")
(define-public r-sn
(package
(name "r-sn")
- (version "1.5-1")
+ (version "1.5-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "sn" version))
(sha256
(base32
- "0l7qlah6dwkp8jswnr2mn3phlm15naba5zkmv0g5pcqy5ix0gz7w"))))
+ "16gwr68zzj5v83bqfmzxnzwig3dnjrkxdhs6clri1caqkvrq6aig"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mnormt" ,r-mnormt)