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authorRicardo Wurmus <rekado@elephly.net>2017-08-31 18:20:19 +0200
committerRicardo Wurmus <rekado@elephly.net>2017-08-31 18:24:51 +0200
commitdeee5ddaf42c8c65cf374e919f85c4f18f4525c9 (patch)
treeb0285a567e632ee7a262cdb94389bf9f96d6f924 /gnu/packages/python.scm
parentc92483bd6309efcc0a20cdb574df00b65da0362b (diff)
downloadguix-deee5ddaf42c8c65cf374e919f85c4f18f4525c9.tar
guix-deee5ddaf42c8c65cf374e919f85c4f18f4525c9.tar.gz
gnu: python-rpy2: Update to 2.9.0.
* gnu/packages/python.scm (python-rpy2): Update to 2.9.0. [arguments]: Run tests before install phase; add build phase "fix-tests". [propagated-inputs]: Add python-jinja2 and python-pytz. [inputs]: Add r-ggplot2, r-rsqlite, r-dplyr, r-dbplyr, and python-numpy.
Diffstat (limited to 'gnu/packages/python.scm')
-rw-r--r--gnu/packages/python.scm43
1 files changed, 33 insertions, 10 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index e330eb6008..21f8029940 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -4396,33 +4396,56 @@ operators such as union, intersection, and difference.")
(define-public python-rpy2
(package
(name "python-rpy2")
- (version "2.7.6")
+ (version "2.9.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rpy2" version))
(sha256
(base32
- "0nhan2qvrw7b7gg5zddwa22kybdv3x1g26vkd7q8lvnkgzrs4dga"))))
+ "0bqihjrdqwj5r1h86shvfb1p5hfr4a6klv1v54bzfr9r144w3rni"))))
(build-system python-build-system)
(arguments
- '(#:phases
+ '(#:modules ((ice-9 ftw)
+ (srfi srfi-1)
+ (srfi srfi-26)
+ (guix build utils)
+ (guix build python-build-system))
+ #:phases
(modify-phases %standard-phases
- (delete 'check)
- (add-after 'install 'check
+ ;; Without this phase the test loader cannot find the directories, in
+ ;; which it is supposed to look for test files.
+ (add-after 'unpack 'fix-tests
+ (lambda* (#:key outputs #:allow-other-keys)
+ (substitute* "rpy/tests.py"
+ (("loader.discover\\(")
+ "loader.discover(rpy_root + '/' +"))
+ #t))
+ (replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
- ;; It's easier to run tests after install.
- ;; Make installed package available for running the tests
- (add-installed-pythonpath inputs outputs)
+ (let ((cwd (getcwd)))
+ (setenv "PYTHONPATH"
+ (string-append cwd "/build/"
+ (find (cut string-prefix? "lib" <>)
+ (scandir (string-append cwd "/build")))
+ ":"
+ (getenv "PYTHONPATH"))))
(zero? (system* "python" "-m" "rpy2.tests" "-v")))))))
(propagated-inputs
- `(("python-six" ,python-six)))
+ `(("python-six" ,python-six)
+ ("python-jinja2" ,python-jinja2)
+ ("python-pytz" ,python-pytz)))
(inputs
`(("readline" ,readline)
("icu4c" ,icu4c)
("pcre" ,pcre)
("r-minimal" ,r-minimal)
- ("r-survival" ,r-survival)))
+ ("r-survival" ,r-survival)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-dplyr" ,r-dplyr)
+ ("r-dbplyr" ,r-dbplyr)
+ ("python-numpy" ,python-numpy)))
(native-inputs
`(("zlib" ,zlib)))
(home-page "http://rpy.sourceforge.net/")