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authorLudovic Courtès <ludovic.courtes@inria.fr>2019-12-13 13:44:51 +0100
committerLudovic Courtès <ludo@gnu.org>2019-12-13 18:04:04 +0100
commit94fea21b214a9111c5c8155bfebdad13114df95f (patch)
tree036873aad52622ebcceb5ef477e1bda7c14f4801 /gnu/packages/patches
parent6212146f887327b0ef017702982194f2d8180178 (diff)
downloadguix-94fea21b214a9111c5c8155bfebdad13114df95f.tar
guix-94fea21b214a9111c5c8155bfebdad13114df95f.tar.gz
gnu: hdf5@1.10: Update to 1.10.5.
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
Diffstat (limited to 'gnu/packages/patches')
-rw-r--r--gnu/packages/patches/hdf5-mpi-deprecations.patch61
1 files changed, 0 insertions, 61 deletions
diff --git a/gnu/packages/patches/hdf5-mpi-deprecations.patch b/gnu/packages/patches/hdf5-mpi-deprecations.patch
deleted file mode 100644
index eb5d1cb681..0000000000
--- a/gnu/packages/patches/hdf5-mpi-deprecations.patch
+++ /dev/null
@@ -1,61 +0,0 @@
---- a/src/H5.c
-+++ b/src/H5.c
-@@ -138,7 +138,7 @@
- if (mpi_initialized && !mpi_finalized) {
- int key_val;
-
-- if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_NULL_COPY_FN,
-+ if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,
- (MPI_Comm_delete_attr_function *)H5_mpi_delete_cb,
- &key_val, NULL)))
- HMPI_GOTO_ERROR(FAIL, "MPI_Comm_create_keyval failed", mpi_code)
---- hdf5-1.10.4/testpar/t_cache.c
-+++ hdf5-1.10.4/testpar/t_cache.c
-@@ -1217,20 +1217,20 @@
- struct mssg_t sample; /* used to compute displacements */
-
- /* setup the displacements array */
-- if ( ( MPI_SUCCESS != MPI_Address(&sample.req, &displs[0]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.src, &displs[1]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.dest, &displs[2]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.mssg_num, &displs[3]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.base_addr, &displs[4]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.len, &displs[5]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.ver, &displs[6]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.count, &displs[7]) ) ||
-- ( MPI_SUCCESS != MPI_Address(&sample.magic, &displs[8]) ) ) {
-+ if ( ( MPI_SUCCESS != MPI_Get_address(&sample.req, &displs[0]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.src, &displs[1]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.dest, &displs[2]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.mssg_num, &displs[3]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.base_addr, &displs[4]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.len, &displs[5]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.ver, &displs[6]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.count, &displs[7]) ) ||
-+ ( MPI_SUCCESS != MPI_Get_address(&sample.magic, &displs[8]) ) ) {
-
- nerrors++;
- success = FALSE;
- if ( verbose ) {
-- HDfprintf(stdout, "%d:%s: MPI_Address() call failed.\n",
-+ HDfprintf(stdout, "%d:%s: MPI_Get_address() call failed.\n",
- world_mpi_rank, FUNC);
- }
-
-@@ -1245,14 +1245,14 @@
-
- if ( success ) {
-
-- result = MPI_Type_struct(9, block_len, displs, mpi_types, &mpi_mssg_t);
-+ result = MPI_Type_create_struct(9, block_len, displs, mpi_types, &mpi_mssg_t);
-
- if ( result != MPI_SUCCESS ) {
-
- nerrors++;
- success = FALSE;
- if ( verbose ) {
-- HDfprintf(stdout, "%d:%s: MPI_Type_struct() call failed.\n",
-+ HDfprintf(stdout, "%d:%s: MPI_Type_create_struct() call failed.\n",
- world_mpi_rank, FUNC);
- }
- }