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authorMarius Bakke <mbakke@fastmail.com>2018-06-11 23:52:15 +0200
committerMarius Bakke <mbakke@fastmail.com>2018-06-11 23:52:15 +0200
commita032b4454b3fc67e11e9fc2d8c2345288065fa29 (patch)
treec208124b79dbd2224b68c52106aa72ff2ebfa7ab /gnu/packages/patches
parentb5724230fed2d043206df20d12a45bb962b7ee77 (diff)
parent6321ce42ab4d9ab788d858cb19bde4aa7a0e3ecc (diff)
downloadguix-a032b4454b3fc67e11e9fc2d8c2345288065fa29.tar
guix-a032b4454b3fc67e11e9fc2d8c2345288065fa29.tar.gz
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages/patches')
-rw-r--r--gnu/packages/patches/adb-add-libraries.patch30
-rw-r--r--gnu/packages/patches/alsa-lib-add-environment-variable.patch110
-rw-r--r--gnu/packages/patches/amule-crypto-6.patch45
-rw-r--r--gnu/packages/patches/binutils-ld-new-dtags.patch16
-rw-r--r--gnu/packages/patches/boost-fix-icu-build.patch53
-rw-r--r--gnu/packages/patches/btrfs-progs-e-value-block.patch37
-rw-r--r--gnu/packages/patches/cmake-fix-tests.patch120
-rw-r--r--gnu/packages/patches/doxygen-gcc-ice.patch25
-rw-r--r--gnu/packages/patches/e2fsprogs-glibc-2.27.patch56
-rw-r--r--gnu/packages/patches/elogind-glibc-2.27.patch22
-rw-r--r--gnu/packages/patches/emacs-fix-scheme-indent-function.patch14
-rw-r--r--gnu/packages/patches/enlightenment-fix-setuid-path.patch168
-rw-r--r--gnu/packages/patches/fifo-map-fix-flags-for-gcc.patch39
-rw-r--r--gnu/packages/patches/fifo-map-remove-catch.hpp.patch30
-rw-r--r--gnu/packages/patches/fontconfig-remove-debug-printf.patch18
-rw-r--r--gnu/packages/patches/gawk-shell.patch30
-rw-r--r--gnu/packages/patches/gcc-strmov-store-file-names.patch50
-rw-r--r--gnu/packages/patches/gegl-CVE-2012-4433.patch117
-rw-r--r--gnu/packages/patches/ghostscript-no-header-id.patch13
-rw-r--r--gnu/packages/patches/gimp-CVE-2017-17784.patch41
-rw-r--r--gnu/packages/patches/gimp-CVE-2017-17785.patch171
-rw-r--r--gnu/packages/patches/gimp-CVE-2017-17786.patch94
-rw-r--r--gnu/packages/patches/gimp-CVE-2017-17787.patch42
-rw-r--r--gnu/packages/patches/gimp-CVE-2017-17789.patch48
-rw-r--r--gnu/packages/patches/glib-respect-datadir.patch21
-rw-r--r--gnu/packages/patches/glibc-2.27-git-fixes.patch702
-rw-r--r--gnu/packages/patches/glibc-bootstrap-system.patch14
-rw-r--r--gnu/packages/patches/glibc-hidden-visibility-ldconfig.patch16
-rw-r--r--gnu/packages/patches/glibc-locales.patch12
-rw-r--r--gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch127
-rw-r--r--gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch50
-rw-r--r--gnu/packages/patches/graphite2-ffloat-store.patch34
-rw-r--r--gnu/packages/patches/groovy-add-exceptionutilsgenerator.patch98
-rw-r--r--gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch53
-rw-r--r--gnu/packages/patches/heimdal-CVE-2017-11103.patch45
-rw-r--r--gnu/packages/patches/heimdal-CVE-2017-6594.patch85
-rw-r--r--gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch441
-rw-r--r--gnu/packages/patches/lcms-CVE-2016-10165.patch36
-rw-r--r--gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch58
-rw-r--r--gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch78
-rw-r--r--gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch51
-rw-r--r--gnu/packages/patches/liboop-mips64-deplibs-fix.patch17
-rw-r--r--gnu/packages/patches/libreoffice-icu.patch126
-rw-r--r--gnu/packages/patches/libtasn1-CVE-2017-10790.patch63
-rw-r--r--gnu/packages/patches/libtasn1-CVE-2018-6003.patch73
-rw-r--r--gnu/packages/patches/libusb-for-axoloti.patch14
-rw-r--r--gnu/packages/patches/libutils-add-includes.patch11
-rw-r--r--gnu/packages/patches/libutils-remove-damaging-includes.patch21
-rw-r--r--gnu/packages/patches/libvorbis-CVE-2017-14632.patch63
-rw-r--r--gnu/packages/patches/libvorbis-CVE-2017-14633.patch43
-rw-r--r--gnu/packages/patches/libxcb-python-3.5-compat.patch64
-rw-r--r--gnu/packages/patches/libziparchive-add-includes.patch10
-rw-r--r--gnu/packages/patches/make-glibc-compat.patch52
-rw-r--r--gnu/packages/patches/maven-generate-component-xml.patch171
-rw-r--r--gnu/packages/patches/maven-generate-javax-inject-named.patch31
-rw-r--r--gnu/packages/patches/mumble-1.2.19-abs.patch31
-rw-r--r--gnu/packages/patches/mupdf-CVE-2017-17858.patch111
-rw-r--r--gnu/packages/patches/mupdf-CVE-2018-1000051.patch88
-rw-r--r--gnu/packages/patches/mupdf-CVE-2018-6544.patch109
-rw-r--r--gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch27
-rw-r--r--gnu/packages/patches/myrepos-CVE-2018-7032.patch69
-rw-r--r--gnu/packages/patches/opensmtpd-fix-crash.patch44
-rw-r--r--gnu/packages/patches/patch-hurd-path-max.patch15
-rw-r--r--gnu/packages/patches/pcre2-CVE-2017-7186.patch68
-rw-r--r--gnu/packages/patches/pcre2-CVE-2017-8786.patch155
-rw-r--r--gnu/packages/patches/perf-gcc-ice.patch13
-rw-r--r--gnu/packages/patches/pius.patch38
-rw-r--r--gnu/packages/patches/pulseaudio-glibc-2.27.patch67
-rw-r--r--gnu/packages/patches/pycairo-wscript.patch31
-rw-r--r--gnu/packages/patches/python-3-search-paths.patch13
-rw-r--r--gnu/packages/patches/python-statsmodels-fix-tests.patch28
-rw-r--r--gnu/packages/patches/qemu-glibc-2.27.patch55
-rw-r--r--gnu/packages/patches/quassel-qt-5.11.patch72
-rw-r--r--gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch28
-rw-r--r--gnu/packages/patches/shadow-CVE-2018-7169.patch191
-rw-r--r--gnu/packages/patches/strace-kernel-4.16.patch92
-rw-r--r--gnu/packages/patches/tar-CVE-2016-6321.patch51
-rw-r--r--gnu/packages/patches/tar-remove-wholesparse-check.patch68
-rw-r--r--gnu/packages/patches/util-linux-CVE-2018-7738.patch49
-rw-r--r--gnu/packages/patches/util-linux-tests.patch8
-rw-r--r--gnu/packages/patches/xcb-proto-python3-print.patch75
-rw-r--r--gnu/packages/patches/xcb-proto-python3-whitespace.patch217
82 files changed, 3404 insertions, 2478 deletions
diff --git a/gnu/packages/patches/adb-add-libraries.patch b/gnu/packages/patches/adb-add-libraries.patch
new file mode 100644
index 0000000000..b014832f62
--- /dev/null
+++ b/gnu/packages/patches/adb-add-libraries.patch
@@ -0,0 +1,30 @@
+--- a/adb/Android.mk 2018-04-25 23:23:29.527198350 +0200
++++ b/adb/Android.mk 2018-04-25 23:24:25.558632573 +0200
+@@ -226,7 +226,7 @@
+ LOCAL_SRC_FILES := test_track_devices.cpp
+ LOCAL_SANITIZE := $(adb_host_sanitize)
+ LOCAL_SHARED_LIBRARIES := libbase
+-LOCAL_STATIC_LIBRARIES := libadb libcrypto_static libcutils
++LOCAL_STATIC_LIBRARIES := libadb libbase libcrypto_static libcutils
+ LOCAL_LDLIBS += -lrt -ldl -lpthread
+ include $(BUILD_HOST_EXECUTABLE)
+ endif
+@@ -278,6 +278,7 @@
+ LOCAL_SANITIZE := $(adb_host_sanitize)
+ LOCAL_STATIC_LIBRARIES := \
+ libadb \
++ libcutils \
+ libbase \
+ libcrypto_static \
+ libdiagnose_usb \
+--- a/adb/sysdeps_test.cpp 2018-05-09 23:58:46.583163684 +0200
++++ b/adb/sysdeps_test.cpp 2018-05-09 23:56:41.356544648 +0200
+@@ -17,6 +17,8 @@
+ #include <gtest/gtest.h>
+ #include <unistd.h>
+ #include <atomic>
++#include <climits>
++#include <mutex>
+
+ #include "adb_io.h"
+ #include "sysdeps.h"
diff --git a/gnu/packages/patches/alsa-lib-add-environment-variable.patch b/gnu/packages/patches/alsa-lib-add-environment-variable.patch
new file mode 100644
index 0000000000..a468a7fc4f
--- /dev/null
+++ b/gnu/packages/patches/alsa-lib-add-environment-variable.patch
@@ -0,0 +1,110 @@
+From 1822fb453128a1b5de93b4c590cd272d6488a077 Mon Sep 17 00:00:00 2001
+From: Julien Lepiller <julien@lepiller.eu>
+Date: Fri, 25 May 2018 19:26:58 +0200
+Subject: [PATCH] Add support for a ALSA_PLUGIN_DIR environment variable.
+
+If it is not set, default to previous behavior.
+---
+ src/control/control.c | 6 +++++-
+ src/dlmisc.c | 9 +++++++--
+ src/pcm/pcm.c | 9 +++++++--
+ src/pcm/pcm_rate.c | 13 +++++++++----
+ 4 files changed, 28 insertions(+), 9 deletions(-)
+
+diff --git a/src/control/control.c b/src/control/control.c
+index 11f7815..9dba7dd 100644
+--- a/src/control/control.c
++++ b/src/control/control.c
+@@ -1331,7 +1331,11 @@ static int snd_ctl_open_conf(snd_ctl_t **ctlp, const char *name,
+ build_in++;
+ }
+ if (*build_in == NULL) {
+- buf1 = malloc(strlen(str) + sizeof(ALSA_PLUGIN_DIR) + 32);
++ char* plugdir = ALSA_PLUGIN_DIR;
++ char* envplugdir = getenv("ALSA_PLUGIN_DIR");
++ if(envplugdir != NULL)
++ plugdir = envplugdir;
++ buf1 = malloc(strlen(str) + strlen(plugdir) + 32);
+ if (buf1 == NULL) {
+ err = -ENOMEM;
+ goto _err;
+diff --git a/src/dlmisc.c b/src/dlmisc.c
+index 3757d33..92aa864 100644
+--- a/src/dlmisc.c
++++ b/src/dlmisc.c
+@@ -82,9 +82,14 @@ void *snd_dlopen(const char *name, int mode, char *errbuf, size_t errbuflen)
+ char *filename = NULL;
+
+ if (name && name[0] != '/') {
+- filename = alloca(sizeof(ALSA_PLUGIN_DIR) + 1 + strlen(name) + 1);
++ char* plugdir = ALSA_PLUGIN_DIR;
++ char* envplugdir = getenv("ALSA_PLUGIN_DIR");
++ if(envplugdir != NULL)
++ plugdir = envplugdir;
++
++ filename = malloc(strlen(plugdir) + 1 + strlen(name) + 1);
+ if (filename) {
+- strcpy(filename, ALSA_PLUGIN_DIR);
++ strcpy(filename, plugdir);
+ strcat(filename, "/");
+ strcat(filename, name);
+ handle = dlopen(filename, mode);
+diff --git a/src/pcm/pcm.c b/src/pcm/pcm.c
+index 11aec80..590e8b6 100644
+--- a/src/pcm/pcm.c
++++ b/src/pcm/pcm.c
+@@ -2496,13 +2496,18 @@ static int snd_pcm_open_conf(snd_pcm_t **pcmp, const char *name,
+ build_in++;
+ }
+ if (*build_in == NULL) {
+- buf1 = malloc(strlen(str) + sizeof(ALSA_PLUGIN_DIR) + 32);
++ char* plugdir = ALSA_PLUGIN_DIR;
++ char* envplugdir = getenv("ALSA_PLUGIN_DIR");
++ if(envplugdir != NULL)
++ plugdir = envplugdir;
++ buf1 = malloc(strlen(str) + strlen(plugdir) + 32);
++
+ if (buf1 == NULL) {
+ err = -ENOMEM;
+ goto _err;
+ }
+ lib = buf1;
+- sprintf(buf1, "%s/libasound_module_pcm_%s.so", ALSA_PLUGIN_DIR, str);
++ sprintf(buf1, "%s/libasound_module_pcm_%s.so", plugdir, str);
+ }
+ }
+ #ifndef PIC
+diff --git a/src/pcm/pcm_rate.c b/src/pcm/pcm_rate.c
+index 4e0c7ca..8694a38 100644
+--- a/src/pcm/pcm_rate.c
++++ b/src/pcm/pcm_rate.c
+@@ -1260,7 +1260,8 @@ static const char *const default_rate_plugins[] = {
+
+ static int rate_open_func(snd_pcm_rate_t *rate, const char *type, const snd_config_t *converter_conf, int verbose)
+ {
+- char open_name[64], open_conf_name[64], lib_name[128], *lib = NULL;
++ char open_name[64], open_conf_name[64], *lib = NULL;
++ char *buf1;
+ snd_pcm_rate_open_func_t open_func;
+ snd_pcm_rate_open_conf_func_t open_conf_func;
+ int err;
+@@ -1268,9 +1269,13 @@ static int rate_open_func(snd_pcm_rate_t *rate, const char *type, const snd_conf
+ snprintf(open_name, sizeof(open_name), "_snd_pcm_rate_%s_open", type);
+ snprintf(open_conf_name, sizeof(open_conf_name), "_snd_pcm_rate_%s_open_conf", type);
+ if (!is_builtin_plugin(type)) {
+- snprintf(lib_name, sizeof(lib_name),
+- "%s/libasound_module_rate_%s.so", ALSA_PLUGIN_DIR, type);
+- lib = lib_name;
++ char* plugdir = ALSA_PLUGIN_DIR;
++ char* envplugdir = getenv("ALSA_PLUGIN_DIR");
++ if(envplugdir != NULL)
++ plugdir = envplugdir;
++ buf1 = malloc(strlen(type) + strlen(plugdir) + 32);
++ sprintf(buf1, "%s/libasound_module_rate_%s.so", plugdir, type);
++ lib = buf1;
+ }
+
+ rate->rate_min = SND_PCM_PLUGIN_RATE_MIN;
+--
+2.17.0
+
diff --git a/gnu/packages/patches/amule-crypto-6.patch b/gnu/packages/patches/amule-crypto-6.patch
new file mode 100644
index 0000000000..21a86ab0fa
--- /dev/null
+++ b/gnu/packages/patches/amule-crypto-6.patch
@@ -0,0 +1,45 @@
+From d1d1368c7909ffd8423730afaa811ce7b6a3a8aa Mon Sep 17 00:00:00 2001
+From: Tommy Jerry Mairo <tommy.mairo@gmail.com>
+Date: Sun, 4 Feb 2018 12:42:00 -0800
+Subject: [PATCH 1/2] Bugfix: API mismatch with crypto++ 6.0.0
+
+---
+ src/ClientCreditsList.cpp | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/ClientCreditsList.cpp b/src/ClientCreditsList.cpp
+index 3bea9fe2d..a7ae1e34c 100644
+--- a/src/ClientCreditsList.cpp
++++ b/src/ClientCreditsList.cpp
+@@ -312,7 +312,7 @@ void CClientCreditsList::InitalizeCrypting()
+ // calculate and store public key
+ CryptoPP::RSASSA_PKCS1v15_SHA_Verifier pubkey(*static_cast<CryptoPP::RSASSA_PKCS1v15_SHA_Signer *>(m_pSignkey));
+ CryptoPP::ArraySink asink(m_abyMyPublicKey, 80);
+- pubkey.DEREncode(asink);
++ pubkey.AccessMaterial().Save(asink);
+ m_nMyPublicKeyLen = asink.TotalPutLength();
+ asink.MessageEnd();
+ } catch (const CryptoPP::Exception& e) {
+
+From 88ba0ac952b78382445f2fff73c6792c0474dc62 Mon Sep 17 00:00:00 2001
+From: Tommy Jerry Mairo <tommy.mairo@gmail.com>
+Date: Wed, 21 Mar 2018 11:56:28 -0700
+Subject: [PATCH 2/2] Update: Change AccessMaterial to GetMaterial
+
+---
+ src/ClientCreditsList.cpp | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/ClientCreditsList.cpp b/src/ClientCreditsList.cpp
+index a7ae1e34c..69e881fd8 100644
+--- a/src/ClientCreditsList.cpp
++++ b/src/ClientCreditsList.cpp
+@@ -312,7 +312,7 @@ void CClientCreditsList::InitalizeCrypting()
+ // calculate and store public key
+ CryptoPP::RSASSA_PKCS1v15_SHA_Verifier pubkey(*static_cast<CryptoPP::RSASSA_PKCS1v15_SHA_Signer *>(m_pSignkey));
+ CryptoPP::ArraySink asink(m_abyMyPublicKey, 80);
+- pubkey.AccessMaterial().Save(asink);
++ pubkey.GetMaterial().Save(asink);
+ m_nMyPublicKeyLen = asink.TotalPutLength();
+ asink.MessageEnd();
+ } catch (const CryptoPP::Exception& e) {
diff --git a/gnu/packages/patches/binutils-ld-new-dtags.patch b/gnu/packages/patches/binutils-ld-new-dtags.patch
deleted file mode 100644
index 5f7a03fc38..0000000000
--- a/gnu/packages/patches/binutils-ld-new-dtags.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-Turn on --enable-new-dtags by default to make the linker set RUNPATH
-instead of RPATH on binaries. This is important because RUNPATH can
-be overriden using LD_LIBRARY_PATH at runtime.
-
-Patch from Nixpkgs by Eelco Dolstra <eelco.dolstra@logicblox.com>.
-
---- binutils/ld/ldmain.c
-+++ binutils/ld/ldmain.c
-@@ -296,6 +296,7 @@ main (int argc, char **argv)
-
- link_info.allow_undefined_version = TRUE;
- link_info.keep_memory = TRUE;
-+ link_info.new_dtags = TRUE;
- link_info.combreloc = TRUE;
- link_info.strip_discarded = TRUE;
- link_info.callbacks = &link_callbacks;
diff --git a/gnu/packages/patches/boost-fix-icu-build.patch b/gnu/packages/patches/boost-fix-icu-build.patch
new file mode 100644
index 0000000000..556f91b8f7
--- /dev/null
+++ b/gnu/packages/patches/boost-fix-icu-build.patch
@@ -0,0 +1,53 @@
+Pass -std=c++11 when compiling files that include the ICU headers. Without
+this flag, compilation fails and causes Boost's build system to remove ICU
+support. Note that $(pkg-config --variable=CXXFLAGS icu-uc) includes
+"-std=c++11", but Boost's build system does not use 'pkg-config'.
+
+--- boost_1_66_0/libs/locale/build/Jamfile.v2.orig 2017-12-13 18:56:44.000000000 -0500
++++ boost_1_66_0/libs/locale/build/Jamfile.v2 2018-04-08 15:18:58.673025760 -0400
+@@ -65,8 +65,8 @@
+
+ if $(ICU_LINK)
+ {
+- ICU_OPTS = <include>$(ICU_PATH)/include <linkflags>$(ICU_LINK) <dll-path>$(ICU_PATH)/bin <runtime-link>shared ;
+- ICU64_OPTS = <include>$(ICU_PATH)/include <linkflags>$(ICU_LINK) <dll-path>$(ICU_PATH)/bin64 <runtime-link>shared ;
++ ICU_OPTS = <include>$(ICU_PATH)/include <cxxflags>-std=c++11 <linkflags>$(ICU_LINK) <dll-path>$(ICU_PATH)/bin <runtime-link>shared ;
++ ICU64_OPTS = <include>$(ICU_PATH)/include <cxxflags>-std=c++11 <linkflags>$(ICU_LINK) <dll-path>$(ICU_PATH)/bin64 <runtime-link>shared ;
+ }
+ else
+ {
+@@ -121,6 +121,7 @@
+ explicit icuuc icudt icuin ;
+
+ ICU_OPTS = <include>$(ICU_PATH)/include
++ <cxxflags>-std=c++11
+ <library>icuuc/<link>shared/<runtime-link>shared
+ <library>icudt/<link>shared/<runtime-link>shared
+ <library>icuin/<link>shared/<runtime-link>shared
+@@ -180,6 +181,7 @@
+ explicit icuuc_64 icudt_64 icuin_64 ;
+
+ ICU64_OPTS = <include>$(ICU_PATH)/include
++ <cxxflags>-std=c++11
+ <library>icuuc_64/<link>shared/<runtime-link>shared
+ <library>icudt_64/<link>shared/<runtime-link>shared
+ <library>icuin_64/<link>shared/<runtime-link>shared
+--- boost_1_66_0/libs/regex/build/Jamfile.v2.orig 2017-12-13 18:56:48.000000000 -0500
++++ boost_1_66_0/libs/regex/build/Jamfile.v2 2018-04-08 15:20:40.865532505 -0400
+@@ -44,7 +44,7 @@
+
+ if $(ICU_LINK)
+ {
+- ICU_OPTS = <include>$(ICU_PATH)/include <linkflags>$(ICU_LINK) <dll-path>$(ICU_PATH)/bin <define>BOOST_HAS_ICU=1 <runtime-link>shared ;
++ ICU_OPTS = <include>$(ICU_PATH)/include <cxxflags>-std=c++11 <linkflags>$(ICU_LINK) <dll-path>$(ICU_PATH)/bin <define>BOOST_HAS_ICU=1 <runtime-link>shared ;
+ }
+ else
+ {
+@@ -78,6 +78,7 @@
+
+ ICU_OPTS =
+ <include>$(ICU_PATH)/include
++ <cxxflags>-std=c++11
+ <runtime-link>shared:<library>icuuc/<link>shared
+ <runtime-link>shared:<library>icudt/<link>shared
+ <runtime-link>shared:<library>icuin/<link>shared
diff --git a/gnu/packages/patches/btrfs-progs-e-value-block.patch b/gnu/packages/patches/btrfs-progs-e-value-block.patch
new file mode 100644
index 0000000000..6365146431
--- /dev/null
+++ b/gnu/packages/patches/btrfs-progs-e-value-block.patch
@@ -0,0 +1,37 @@
+From c78f59a971ce4b543f3177e383b677862b2d9fb5 Mon Sep 17 00:00:00 2001
+From: Qu Wenruo <wqu@suse.com>
+Date: Wed, 14 Mar 2018 08:56:57 +0800
+Subject: [PATCH] btrfs-progs: convert/ext2: Remove check for
+ ext2_ext_attr_entry->e_value_block
+
+In latest e2fsprogs (1.44.0) definition of ext2_ext_attr_entry has
+removed member e_value_block, as currently ext* doesn't support it set
+anyway.
+
+So remove such check so that we can pass compile.
+
+Issue: #110
+Bugzilla: https://bugzilla.kernel.org/show_bug.cgi?id=199071
+Signed-off-by: Qu Wenruo <wqu@suse.com>
+Signed-off-by: David Sterba <dsterba@suse.com>
+---
+ convert/source-ext2.c | 3 +--
+ 1 file changed, 1 insertion(+), 2 deletions(-)
+
+diff --git a/convert/source-ext2.c b/convert/source-ext2.c
+index b1492c78..070126ec 100644
+--- a/convert/source-ext2.c
++++ b/convert/source-ext2.c
+@@ -422,8 +422,7 @@ static int ext2_xattr_check_entry(struct ext2_ext_attr_entry *entry,
+ {
+ size_t value_size = entry->e_value_size;
+
+- if (entry->e_value_block != 0 || value_size > size ||
+- entry->e_value_offs + value_size > size)
++ if (value_size > size || entry->e_value_offs + value_size > size)
+ return -EIO;
+ return 0;
+ }
+--
+2.16.3
+
diff --git a/gnu/packages/patches/cmake-fix-tests.patch b/gnu/packages/patches/cmake-fix-tests.patch
deleted file mode 100644
index 732b0023ab..0000000000
--- a/gnu/packages/patches/cmake-fix-tests.patch
+++ /dev/null
@@ -1,120 +0,0 @@
-From af0a62dadfb3db25880bc653e2e4c97435a604c9 Mon Sep 17 00:00:00 2001
-From: Efraim Flashner <efraim@flashner.co.il>
-Date: Mon, 29 Aug 2016 20:07:58 +0300
-Subject: [PATCH] cmake-fix-tests
-
----
- Tests/CMakeLists.txt | 83 ++++++++++++++++++++++++++++------------------------
- 1 file changed, 44 insertions(+), 39 deletions(-)
-
-diff --git a/Tests/CMakeLists.txt b/Tests/CMakeLists.txt
-index f21e430..56014a2 100644
---- a/Tests/CMakeLists.txt
-+++ b/Tests/CMakeLists.txt
-@@ -416,10 +416,12 @@ if(BUILD_TESTING)
- endif()
-
- # run test for BundleUtilities on supported platforms/compilers
-- if(MSVC OR
-- MINGW OR
-- CMAKE_SYSTEM_NAME MATCHES "Linux" OR
-- CMAKE_SYSTEM_NAME MATCHES "Darwin")
-+# if(MSVC OR
-+# MINGW OR
-+# CMAKE_SYSTEM_NAME MATCHES "Linux" OR
-+# CMAKE_SYSTEM_NAME MATCHES "Darwin")
-+# This test fails on Guix: skip it.
-+ if(FALSE)
- if(NOT "${CMAKE_GENERATOR}" STREQUAL "Watcom WMake")
-
- add_test(BundleUtilities ${CMAKE_CTEST_COMMAND}
-@@ -2481,30 +2483,32 @@ ${CMake_BINARY_DIR}/bin/cmake -DDIR=dev -P ${CMake_SOURCE_DIR}/Utilities/Release
- PASS_REGULAR_EXPRESSION "Could not find executable"
- FAIL_REGULAR_EXPRESSION "SegFault")
-
-- configure_file(
-- "${CMake_SOURCE_DIR}/Tests/CTestTestUpload/test.cmake.in"
-- "${CMake_BINARY_DIR}/Tests/CTestTestUpload/test.cmake"
-- @ONLY ESCAPE_QUOTES)
-- add_test(CTestTestUpload ${CMAKE_CTEST_COMMAND}
-- -S "${CMake_BINARY_DIR}/Tests/CTestTestUpload/test.cmake" -V
-- --output-log "${CMake_BINARY_DIR}/Tests/CTestTestUpload/testOut.log"
-- )
-- set_tests_properties(CTestTestUpload PROPERTIES
-- PASS_REGULAR_EXPRESSION "Upload\\.xml")
--
-- configure_file(
-- "${CMake_SOURCE_DIR}/Tests/CTestCoverageCollectGCOV/test.cmake.in"
-- "${CMake_BINARY_DIR}/Tests/CTestCoverageCollectGCOV/test.cmake"
-- @ONLY ESCAPE_QUOTES)
-- add_test(CTestCoverageCollectGCOV ${CMAKE_CTEST_COMMAND}
-- -C \${CTEST_CONFIGURATION_TYPE}
-- -S "${CMake_BINARY_DIR}/Tests/CTestCoverageCollectGCOV/test.cmake" -VV
-- --output-log "${CMake_BINARY_DIR}/Tests/CTestCoverageCollectGCOV/testOut.log"
-- )
-- set_tests_properties(CTestCoverageCollectGCOV PROPERTIES
-- PASS_REGULAR_EXPRESSION
-- "PASSED with correct output.*Testing/CoverageInfo/main.cpp.gcov")
-- set_property(TEST CTestCoverageCollectGCOV PROPERTY ENVIRONMENT CTEST_PARALLEL_LEVEL=)
-+# This test requires network connectivity: skip it.
-+# configure_file(
-+# "${CMake_SOURCE_DIR}/Tests/CTestTestUpload/test.cmake.in"
-+# "${CMake_BINARY_DIR}/Tests/CTestTestUpload/test.cmake"
-+# @ONLY ESCAPE_QUOTES)
-+# add_test(CTestTestUpload ${CMAKE_CTEST_COMMAND}
-+# -S "${CMake_BINARY_DIR}/Tests/CTestTestUpload/test.cmake" -V
-+# --output-log "${CMake_BINARY_DIR}/Tests/CTestTestUpload/testOut.log"
-+# )
-+# set_tests_properties(CTestTestUpload PROPERTIES
-+# PASS_REGULAR_EXPRESSION "Upload\\.xml")
-+
-+# This test times out
-+# configure_file(
-+# "${CMake_SOURCE_DIR}/Tests/CTestCoverageCollectGCOV/test.cmake.in"
-+# "${CMake_BINARY_DIR}/Tests/CTestCoverageCollectGCOV/test.cmake"
-+# @ONLY ESCAPE_QUOTES)
-+# add_test(CTestCoverageCollectGCOV ${CMAKE_CTEST_COMMAND}
-+# -C \${CTEST_CONFIGURATION_TYPE}
-+# -S "${CMake_BINARY_DIR}/Tests/CTestCoverageCollectGCOV/test.cmake" -VV
-+# --output-log "${CMake_BINARY_DIR}/Tests/CTestCoverageCollectGCOV/testOut.log"
-+# )
-+# set_tests_properties(CTestCoverageCollectGCOV PROPERTIES
-+# PASS_REGULAR_EXPRESSION
-+# "PASSED with correct output.*Testing/CoverageInfo/main.cpp.gcov")
-+# set_property(TEST CTestCoverageCollectGCOV PROPERTY ENVIRONMENT CTEST_PARALLEL_LEVEL=)
-
- configure_file(
- "${CMake_SOURCE_DIR}/Tests/CTestTestEmptyBinaryDirectory/test.cmake.in"
-@@ -2860,17 +2864,18 @@ ${CMake_BINARY_DIR}/bin/cmake -DDIR=dev -P ${CMake_SOURCE_DIR}/Utilities/Release
- set_tests_properties(CTestTestStopTime PROPERTIES
- PASS_REGULAR_EXPRESSION "The stop time has been passed")
-
-- configure_file(
-- "${CMake_SOURCE_DIR}/Tests/CTestTestSubdir/test.cmake.in"
-- "${CMake_BINARY_DIR}/Tests/CTestTestSubdir/test.cmake"
-- @ONLY ESCAPE_QUOTES)
-- add_test(CTestTestSubdir ${CMAKE_CTEST_COMMAND}
-- -S "${CMake_BINARY_DIR}/Tests/CTestTestSubdir/test.cmake" -V
-- --output-log "${CMake_BINARY_DIR}/Tests/CTestTestSubdir/testOutput.log"
-- )
-- #make sure all 3 subdirs were added
-- set_tests_properties(CTestTestSubdir PROPERTIES
-- PASS_REGULAR_EXPRESSION "0 tests failed out of 3")
-+# This test fails to build 2 of the 3 tests
-+# configure_file(
-+# "${CMake_SOURCE_DIR}/Tests/CTestTestSubdir/test.cmake.in"
-+# "${CMake_BINARY_DIR}/Tests/CTestTestSubdir/test.cmake"
-+# @ONLY ESCAPE_QUOTES)
-+# add_test(CTestTestSubdir ${CMAKE_CTEST_COMMAND}
-+# -S "${CMake_BINARY_DIR}/Tests/CTestTestSubdir/test.cmake" -V
-+# --output-log "${CMake_BINARY_DIR}/Tests/CTestTestSubdir/testOutput.log"
-+# )
-+# #make sure all 3 subdirs were added
-+# set_tests_properties(CTestTestSubdir PROPERTIES
-+# PASS_REGULAR_EXPRESSION "0 tests failed out of 3")
-
- configure_file(
- "${CMake_SOURCE_DIR}/Tests/CTestTestTimeout/test.cmake.in"
---
-2.9.3
-
diff --git a/gnu/packages/patches/doxygen-gcc-ice.patch b/gnu/packages/patches/doxygen-gcc-ice.patch
new file mode 100644
index 0000000000..fbfedcb7ab
--- /dev/null
+++ b/gnu/packages/patches/doxygen-gcc-ice.patch
@@ -0,0 +1,25 @@
+Work around this GCC ICE: <https://bugs.gnu.org/31708>. It shows up
+only when doing native compiles on armhf-linux.
+
+Yes it's a terrible patch, but it does the job.
+
+--- doxygen-1.8.13/qtools/qutfcodec.cpp 1970-01-01 01:00:00.000000000 +0100
++++ doxygen-1.8.13/qtools/qutfcodec.cpp 2018-06-08 14:14:29.614009929 +0200
+@@ -189,7 +189,7 @@ int QUtf16Codec::heuristicContentMatch(c
+ }
+
+
+-
++volatile const void *bomPointer = &QChar::byteOrderMark;
+
+ class QUtf16Encoder : public QTextEncoder {
+ bool headerdone;
+@@ -209,7 +209,7 @@ public:
+ headerdone = TRUE;
+ len_in_out = (1+uc.length())*(int)sizeof(QChar);
+ QCString d(len_in_out);
+- memcpy(d.rawData(),&QChar::byteOrderMark,sizeof(QChar));
++ memcpy(d.rawData(),(void *)bomPointer,sizeof(QChar));
+ memcpy(d.rawData()+sizeof(QChar),uc.unicode(),uc.length()*sizeof(QChar));
+ return d;
+ }
diff --git a/gnu/packages/patches/e2fsprogs-glibc-2.27.patch b/gnu/packages/patches/e2fsprogs-glibc-2.27.patch
new file mode 100644
index 0000000000..f0bc7130c0
--- /dev/null
+++ b/gnu/packages/patches/e2fsprogs-glibc-2.27.patch
@@ -0,0 +1,56 @@
+Copied from:
+https://github.com/openwrt/openwrt/blob/58a95f0f8ff768b43d68eed2b6a786e0f40f723b/tools/e2fsprogs/patches/005-misc-rename-copy_file_range-to-copy_file_chunk.patch
+
+From 01551bdba16ab16512a01affe02ade32c41ede8a Mon Sep 17 00:00:00 2001
+From: Palmer Dabbelt <palmer@dabbelt.com>
+Date: Fri, 29 Dec 2017 10:19:51 -0800
+Subject: [PATCH] misc: rename copy_file_range to copy_file_chunk
+
+As of 2.27, glibc will have a copy_file_range library call to wrap the
+new copy_file_range system call. This conflicts with the function in
+misc/create_inode.c, which this patch renames _copy_file_range.
+
+Signed-off-by: Palmer Dabbelt <palmer@dabbelt.com>
+Signed-off-by: Theodore Ts'o <tytso@mit.edu>
+---
+ misc/create_inode.c | 8 ++++----
+ 1 file changed, 4 insertions(+), 4 deletions(-)
+
+--- a/misc/create_inode.c
++++ b/misc/create_inode.c
+@@ -392,7 +392,7 @@ static ssize_t my_pread(int fd, void *bu
+ }
+ #endif /* !defined HAVE_PREAD64 && !defined HAVE_PREAD */
+
+-static errcode_t copy_file_range(ext2_filsys fs, int fd, ext2_file_t e2_file,
++static errcode_t copy_file_chunk(ext2_filsys fs, int fd, ext2_file_t e2_file,
+ off_t start, off_t end, char *buf,
+ char *zerobuf)
+ {
+@@ -466,7 +466,7 @@ static errcode_t try_lseek_copy(ext2_fil
+
+ data_blk = data & ~(fs->blocksize - 1);
+ hole_blk = (hole + (fs->blocksize - 1)) & ~(fs->blocksize - 1);
+- err = copy_file_range(fs, fd, e2_file, data_blk, hole_blk, buf,
++ err = copy_file_chunk(fs, fd, e2_file, data_blk, hole_blk, buf,
+ zerobuf);
+ if (err)
+ return err;
+@@ -516,7 +516,7 @@ static errcode_t try_fiemap_copy(ext2_fi
+ }
+ for (i = 0, ext = ext_buf; i < fiemap_buf->fm_mapped_extents;
+ i++, ext++) {
+- err = copy_file_range(fs, fd, e2_file, ext->fe_logical,
++ err = copy_file_chunk(fs, fd, e2_file, ext->fe_logical,
+ ext->fe_logical + ext->fe_length,
+ buf, zerobuf);
+ if (err)
+@@ -569,7 +569,7 @@ static errcode_t copy_file(ext2_filsys f
+ goto out;
+ #endif
+
+- err = copy_file_range(fs, fd, e2_file, 0, statbuf->st_size, buf,
++ err = copy_file_chunk(fs, fd, e2_file, 0, statbuf->st_size, buf,
+ zerobuf);
+ out:
+ ext2fs_free_mem(&zerobuf);
diff --git a/gnu/packages/patches/elogind-glibc-2.27.patch b/gnu/packages/patches/elogind-glibc-2.27.patch
new file mode 100644
index 0000000000..4ade587b5e
--- /dev/null
+++ b/gnu/packages/patches/elogind-glibc-2.27.patch
@@ -0,0 +1,22 @@
+Look for memfd_create in sys/mman.h instead of linux/memfd.h.
+Needed to build with glibc-2.27.
+
+--- a/configure.ac 1969-12-31 19:00:00.000000000 -0500
++++ b/configure.ac 2018-03-27 23:54:15.414589005 -0400
+@@ -360,7 +360,7 @@
+ # ------------------------------------------------------------------------------
+
+ AC_CHECK_HEADERS([sys/capability.h], [], [AC_MSG_ERROR([*** POSIX caps headers not found])])
+-AC_CHECK_HEADERS([linux/memfd.h], [], [])
++AC_CHECK_HEADERS([sys/mman.h], [], [])
+
+ AC_CHECK_HEADERS([printf.h], [have_printf_h=yes], [have_printf_h=no])
+ AS_IF([test x$have_printf_h = xyes], [
+@@ -395,6 +395,7 @@
+ [], [], [[
+ #include <sys/types.h>
+ #include <unistd.h>
++#include <sys/mman.h>
+ #include <sys/mount.h>
+ #include <fcntl.h>
+ #include <sched.h>
diff --git a/gnu/packages/patches/emacs-fix-scheme-indent-function.patch b/gnu/packages/patches/emacs-fix-scheme-indent-function.patch
index c5a426802c..4b7904ea3b 100644
--- a/gnu/packages/patches/emacs-fix-scheme-indent-function.patch
+++ b/gnu/packages/patches/emacs-fix-scheme-indent-function.patch
@@ -14,16 +14,16 @@ The fix is made by Mark H Weaver <mhw@netris.org>:
--- a/lisp/progmodes/scheme.el
+++ b/lisp/progmodes/scheme.el
-@@ -482,6 +482,12 @@
- (> (length function) 3)
- (string-match "\\`def" function)))
- (lisp-indent-defform state indent-point))
+@@ -494,6 +494,12 @@ indentation."
+ (> (length function) 3)
+ (string-match "\\`def" function)))
+ (lisp-indent-defform state indent-point))
+ ((and (null method)
+ (> (length function) 1)
+ ;; The '#' in '#:' seems to get lost, not sure why
+ (string-match "\\`:" function))
+ (let ((lisp-body-indent 1))
+ (lisp-indent-defform state indent-point)))
- ((integerp method)
- (lisp-indent-specform method state
- indent-point normal-indent))
+ ((integerp method)
+ (lisp-indent-specform method state
+ indent-point normal-indent))
diff --git a/gnu/packages/patches/enlightenment-fix-setuid-path.patch b/gnu/packages/patches/enlightenment-fix-setuid-path.patch
new file mode 100644
index 0000000000..90e16d3e67
--- /dev/null
+++ b/gnu/packages/patches/enlightenment-fix-setuid-path.patch
@@ -0,0 +1,168 @@
+diff --git a/src/bin/e_auth.c b/src/bin/e_auth.c
+index 00b0e5d84..98ab4518f 100644
+--- a/src/bin/e_auth.c
++++ b/src/bin/e_auth.c
+@@ -9,8 +9,7 @@ e_auth_begin(char *passwd)
+
+ if (strlen(passwd) == 0) goto out;
+
+- snprintf(buf, sizeof(buf), "%s/enlightenment/utils/enlightenment_ckpasswd",
+- e_prefix_lib_get());
++ snprintf(buf, sizeof(buf), "/run/setuid-programs/enlightenment_ckpasswd");
+
+ exe = ecore_exe_pipe_run(buf, ECORE_EXE_PIPE_WRITE, NULL);
+ if (ecore_exe_send(exe, passwd, strlen(passwd)) != EINA_TRUE) goto out;
+diff --git a/src/bin/e_backlight.c b/src/bin/e_backlight.c
+index 2bced6766..208e583ba 100644
+--- a/src/bin/e_backlight.c
++++ b/src/bin/e_backlight.c
+@@ -521,8 +521,8 @@ _bl_sys_level_set(double val)
+ }
+ // fprintf(stderr, "SET: %1.3f\n", val);
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_backlight %i %s",
+- e_prefix_lib_get(), (int)(val * 1000.0), bl_sysval);
++ "/run/setuid-programs/enlightenment_backlight %i %s",
++ (int)(val * 1000.0), bl_sysval);
+ bl_sys_set_exe = ecore_exe_run(buf, NULL);
+ }
+ #endif // HAVE_EEZE || __FreeBSD_kernel__
+diff --git a/src/bin/e_fm/e_fm_main_eeze.c b/src/bin/e_fm/e_fm_main_eeze.c
+index b7d9e3eba..d8a9eb82c 100644
+--- a/src/bin/e_fm/e_fm_main_eeze.c
++++ b/src/bin/e_fm/e_fm_main_eeze.c
+@@ -318,7 +318,7 @@ _e_fm_main_eeze_volume_eject(E_Volume *v)
+ {
+ char buf[PATH_MAX];
+
+- snprintf(buf, sizeof(buf), "%s/enlightenment/utils/enlightenment_sys", eina_prefix_lib_get(pfx));
++ snprintf(buf, sizeof(buf), "/run/setuid-programs/enlightenment_sys");
+ eeze_disk_mount_wrapper_set(v->disk, buf);
+ }
+ v->guard = ecore_timer_loop_add(E_FM_EJECT_TIMEOUT, (Ecore_Task_Cb)_e_fm_main_eeze_vol_eject_timeout, v);
+@@ -512,7 +512,7 @@ _e_fm_main_eeze_volume_unmount(E_Volume *v)
+ {
+ char buf[PATH_MAX];
+
+- snprintf(buf, sizeof(buf), "%s/enlightenment/utils/enlightenment_sys", eina_prefix_lib_get(pfx));
++ snprintf(buf, sizeof(buf), "/run/setuid-programs/enlightenment_sys");
+ eeze_disk_mount_wrapper_set(v->disk, buf);
+ }
+ v->guard = ecore_timer_loop_add(E_FM_UNMOUNT_TIMEOUT, (Ecore_Task_Cb)_e_fm_main_eeze_vol_unmount_timeout, v);
+@@ -548,7 +548,7 @@ _e_fm_main_eeze_volume_mount(E_Volume *v)
+ {
+ char buf2[PATH_MAX];
+
+- snprintf(buf2, sizeof(buf2), "%s/enlightenment/utils/enlightenment_sys", eina_prefix_lib_get(pfx));
++ snprintf(buf2, sizeof(buf2), "/run/setuid-programs/enlightenment_sys");
+ eeze_disk_mount_wrapper_set(v->disk, buf2);
+ }
+ v->guard = ecore_timer_loop_add(E_FM_MOUNT_TIMEOUT, (Ecore_Task_Cb)_e_fm_main_eeze_vol_mount_timeout, v);
+diff --git a/src/bin/e_sys.c b/src/bin/e_sys.c
+index 6781a9b5a..8cd140f1b 100644
+--- a/src/bin/e_sys.c
++++ b/src/bin/e_sys.c
+@@ -653,20 +653,16 @@ _e_sys_cb_timer(void *data EINA_UNUSED)
+
+ e_init_status_set(_("Checking System Permissions"));
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys -t halt",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys -t halt");
+ _e_sys_halt_check_exe = ecore_exe_run(buf, NULL);
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys -t reboot",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys -t reboot");
+ _e_sys_reboot_check_exe = ecore_exe_run(buf, NULL);
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys -t suspend",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys -t suspend");
+ _e_sys_suspend_check_exe = ecore_exe_run(buf, NULL);
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys -t hibernate",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys -t hibernate");
+ _e_sys_hibernate_check_exe = ecore_exe_run(buf, NULL);
+ return ECORE_CALLBACK_CANCEL;
+ }
+@@ -1079,8 +1075,7 @@ _e_sys_action_do(E_Sys_Action a, char *param EINA_UNUSED, Eina_Bool raw)
+ /* shutdown -h now */
+ if (e_util_immortal_check()) return 0;
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys halt",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys halt");
+ if (_e_sys_exe)
+ {
+ if ((ecore_time_get() - _e_sys_begin_time) > 2.0)
+@@ -1114,8 +1109,7 @@ _e_sys_action_do(E_Sys_Action a, char *param EINA_UNUSED, Eina_Bool raw)
+ /* shutdown -r now */
+ if (e_util_immortal_check()) return 0;
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys reboot",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys reboot");
+ if (_e_sys_exe)
+ {
+ if ((ecore_time_get() - _e_sys_begin_time) > 2.0)
+@@ -1148,8 +1142,7 @@ _e_sys_action_do(E_Sys_Action a, char *param EINA_UNUSED, Eina_Bool raw)
+ case E_SYS_SUSPEND:
+ /* /etc/acpi/sleep.sh force */
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys suspend",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys suspend");
+ if (_e_sys_exe)
+ {
+ if ((ecore_time_get() - _e_sys_begin_time) > 2.0)
+@@ -1208,8 +1201,7 @@ _e_sys_action_do(E_Sys_Action a, char *param EINA_UNUSED, Eina_Bool raw)
+ case E_SYS_HIBERNATE:
+ /* /etc/acpi/hibernate.sh force */
+ snprintf(buf, sizeof(buf),
+- "%s/enlightenment/utils/enlightenment_sys hibernate",
+- e_prefix_lib_get());
++ "/run/setuid-programs/enlightenment_sys hibernate");
+ if (_e_sys_exe)
+ {
+ if ((ecore_time_get() - _e_sys_begin_time) > 2.0)
+diff --git a/src/modules/bluez4/e_mod_main.c b/src/modules/bluez4/e_mod_main.c
+index 4b5148634..47d34b07f 100644
+--- a/src/modules/bluez4/e_mod_main.c
++++ b/src/modules/bluez4/e_mod_main.c
+@@ -49,8 +49,8 @@ _ebluez_l2ping_poller(void *data EINA_UNUSED)
+
+ if (tmp)
+ {
+- eina_strbuf_append_printf(buf, "%s/enlightenment/utils/enlightenment_sys l2ping %s",
+- e_prefix_lib_get(), tmp);
++ eina_strbuf_append_printf(buf, "/run/setuid-programs/enlightenment_sys l2ping %s",
++ tmp);
+ autolock_exe = ecore_exe_run(eina_strbuf_string_get(buf), NULL);
+ }
+
+@@ -692,8 +692,7 @@ e_modapi_init(E_Module *m)
+ autolock_desklock = ecore_event_handler_add(E_EVENT_DESKLOCK, _ebluez_desklock, NULL);
+
+ buf = eina_strbuf_new();
+- eina_strbuf_append_printf(buf, "%s/enlightenment/utils/enlightenment_sys -t l2ping",
+- e_prefix_lib_get());
++ eina_strbuf_append_printf(buf, "/run/setuid-programs/enlightenment_sys -t l2ping");
+ autolock_exe = ecore_exe_run(eina_strbuf_string_get(buf), NULL);
+ eina_strbuf_free(buf);
+
+diff --git a/src/modules/cpufreq/e_mod_main.c b/src/modules/cpufreq/e_mod_main.c
+index f4ba259b6..ae228bae3 100644
+--- a/src/modules/cpufreq/e_mod_main.c
++++ b/src/modules/cpufreq/e_mod_main.c
+@@ -1450,8 +1450,7 @@ e_modapi_init(E_Module *m)
+ }
+ E_CONFIG_LIMIT(cpufreq_config->poll_interval, 1, 1024);
+
+- snprintf(buf, sizeof(buf), "%s/%s/freqset",
+- e_module_dir_get(m), MODULE_ARCH);
++ snprintf(buf, sizeof(buf), "/run/setuid-programs/freqset");
+ cpufreq_config->set_exe_path = strdup(buf);
+
+ if (stat(buf, &st) < 0)
diff --git a/gnu/packages/patches/fifo-map-fix-flags-for-gcc.patch b/gnu/packages/patches/fifo-map-fix-flags-for-gcc.patch
new file mode 100644
index 0000000000..59b7105220
--- /dev/null
+++ b/gnu/packages/patches/fifo-map-fix-flags-for-gcc.patch
@@ -0,0 +1,39 @@
+From 0871db30bd73d112a434f54572d34cca28de61c5 Mon Sep 17 00:00:00 2001
+From: fis <ybbs.daans@hotmail.com>
+Date: Sat, 26 May 2018 22:58:37 +0800
+Subject: [PATCH 2/2] * CMakeLists.txt: Fix flags for gcc.
+
+---
+ CMakeLists.txt | 18 ++----------------
+ 1 file changed, 2 insertions(+), 16 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index eba147b..d60dcef 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -6,20 +6,6 @@ add_executable(unit src/fifo_map.hpp test/unit.cpp)
+
+ target_include_directories(unit PRIVATE "test" "src")
+
+-if(MSVC)
+- set(CMAKE_CXX_FLAGS
+- "/EHsc"
+- )
++set(CMAKE_CXX_FLAGS "-std=c++11 -fpermissive")
+
+- STRING(REPLACE "/O2" "/Od" CMAKE_CXX_FLAGS_RELEASE ${CMAKE_CXX_FLAGS_RELEASE})
+-
+- add_definitions(-D_SCL_SECURE_NO_WARNINGS)
+-else(MSVC)
+- set(CMAKE_CXX_FLAGS
+- "-std=c++11 -stdlib=libc++"
+- )
+-endif(MSVC)
+-
+-include_directories(
+- src test
+-)
++include_directories(src test)
+--
+2.14.3
+
diff --git a/gnu/packages/patches/fifo-map-remove-catch.hpp.patch b/gnu/packages/patches/fifo-map-remove-catch.hpp.patch
new file mode 100644
index 0000000000..be4efd3e9a
--- /dev/null
+++ b/gnu/packages/patches/fifo-map-remove-catch.hpp.patch
@@ -0,0 +1,30 @@
+From 20dcf90fd02511f8d78ea7cc8ac82c121fd2f6cf Mon Sep 17 00:00:00 2001
+From: fis <ybbs.daans@hotmail.com>
+Date: Sat, 26 May 2018 22:56:29 +0800
+Subject: [PATCH 1/2] * CMakeLists.txt: Remove catch.hpp.
+
+---
+ CMakeLists.txt | 6 ++----
+ 1 file changed, 2 insertions(+), 4 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 6603c7f..eba147b 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -2,11 +2,9 @@ cmake_minimum_required(VERSION 2.8)
+
+ project(fifo_map LANGUAGES CXX)
+
+-add_executable(unit
+- src/fifo_map.hpp test/thirdparty/catch/catch.hpp test/unit.cpp
+-)
++add_executable(unit src/fifo_map.hpp test/unit.cpp)
+
+-target_include_directories(unit PRIVATE "test" "src" "test/thirdparty")
++target_include_directories(unit PRIVATE "test" "src")
+
+ if(MSVC)
+ set(CMAKE_CXX_FLAGS
+--
+2.14.3
+
diff --git a/gnu/packages/patches/fontconfig-remove-debug-printf.patch b/gnu/packages/patches/fontconfig-remove-debug-printf.patch
deleted file mode 100644
index 04924a45a4..0000000000
--- a/gnu/packages/patches/fontconfig-remove-debug-printf.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-Fontconfig 2.12.5 and 2.12.6 was released with a stray debugging statement.
-See <https://lists.freedesktop.org/archives/fontconfig/2017-October/006079.html>.
-
-Patch copied from upstream source repository:
-https://cgit.freedesktop.org/fontconfig/commit/?id=b56207a069be2574df455ede0a6ab61f44d5ca2b
-
-diff --git a/fc-query/fc-query.c b/fc-query/fc-query.c
-index 842a8b6..6cd5abd 100644
---- a/fc-query/fc-query.c
-+++ b/fc-query/fc-query.c
-@@ -170,7 +170,6 @@ main (int argc, char **argv)
- FcPattern *pat;
-
- id = ((instance_num << 16) + face_num);
-- printf("id %d\n", id);
- if (FT_New_Face (ftLibrary, argv[i], id, &face))
- break;
- num_faces = face->num_faces;
diff --git a/gnu/packages/patches/gawk-shell.patch b/gnu/packages/patches/gawk-shell.patch
index 80e9c65475..46ca5e451f 100644
--- a/gnu/packages/patches/gawk-shell.patch
+++ b/gnu/packages/patches/gawk-shell.patch
@@ -4,31 +4,39 @@ absolute file name of `sh'.
--- gawk-4.1.3/io.c 2015-05-19 15:37:20.000000000 +0200
+++ gawk-4.1.3/io.c 2015-06-09 18:39:36.918414881 +0200
-@@ -1945,7 +1945,7 @@ two_way_open(const char *str, struct red
+@@ -2025,7 +2025,7 @@
- signal(SIGPIPE, SIG_DFL);
+ set_sigpipe_to_default();
-- execl("/bin/sh", "sh", "-c", str, NULL);
-+ execlp("sh", "sh", "-c", str, NULL);
- _exit(errno == ENOENT ? 127 : 126);
+- execl("/bin/sh", "sh", "-c", command, NULL);
++ execlp("sh", "sh", "-c", command, NULL);
+ _exit(errno == ENOENT ? 127 : 126);
+
+ case -1:
+@@ -2077,7 +2077,7 @@
- case -1:
-@@ -2129,7 +2129,7 @@ use_pipes:
+ signal(SIGPIPE, SIG_DFL);
+
+- execl("/bin/sh", "sh", "-c", command, NULL);
++ execlp("sh", "sh", "-c", command, NULL);
+ _exit(errno == ENOENT ? 127 : 126);
+
+ case -1:
+@@ -2422,7 +2422,7 @@
fatal(_("close of pipe failed (%s)"), strerror(errno));
/* stderr does NOT get dup'ed onto child's stdout */
- signal(SIGPIPE, SIG_DFL);
+ set_sigpipe_to_default();
- execl("/bin/sh", "sh", "-c", str, NULL);
+ execlp("sh", "sh", "-c", str, NULL);
_exit(errno == ENOENT ? 127 : 126);
}
#endif /* NOT __EMX__, NOT __MINGW32__ */
-@@ -2323,7 +2323,7 @@ gawk_popen(const char *cmd, struct redir
+@@ -2659,7 +2659,7 @@
if (close(p[0]) == -1 || close(p[1]) == -1)
fatal(_("close of pipe failed (%s)"), strerror(errno));
- signal(SIGPIPE, SIG_DFL);
+ set_sigpipe_to_default();
- execl("/bin/sh", "sh", "-c", cmd, NULL);
+ execlp("sh", "sh", "-c", cmd, NULL);
_exit(errno == ENOENT ? 127 : 126);
}
#endif /* NOT __EMX__, NOT __MINGW32__ */
-
diff --git a/gnu/packages/patches/gcc-strmov-store-file-names.patch b/gnu/packages/patches/gcc-strmov-store-file-names.patch
index 7951b87616..9f9162855d 100644
--- a/gnu/packages/patches/gcc-strmov-store-file-names.patch
+++ b/gnu/packages/patches/gcc-strmov-store-file-names.patch
@@ -2,23 +2,43 @@ Make sure that statements such as:
strcpy (dst, "/gnu/store/…");
+or
+
+ static const char str[] = "/gnu/store/…";
+ …
+ strcpy (dst, str);
+
do not result in chunked /gnu/store strings that are undetectable by
-Guix's GC and its grafting code. See <http://bugs.gnu.org/24703>.
+Guix's GC and its grafting code. See <https://bugs.gnu.org/24703>
+and <https://bugs.gnu.org/30395>.
+
--- gcc-5.3.0/gcc/builtins.c 2016-10-18 10:50:46.080616285 +0200
+++ gcc-5.3.0/gcc/builtins.c 2016-11-09 15:26:43.693042737 +0100
-@@ -3192,6 +3192,42 @@ determine_block_size (tree len, rtx len_
+@@ -3192,6 +3192,54 @@ determine_block_size (tree len, rtx len_
GET_MODE_MASK (GET_MODE (len_rtx)));
}
++extern void debug_tree (tree);
++
+/* Return true if STR contains the string "/gnu/store". */
+
-+static bool
++bool
+store_reference_p (tree str)
+{
++ if (getenv ("GUIX_GCC_DEBUG") != NULL)
++ debug_tree (str);
++
+ if (TREE_CODE (str) == ADDR_EXPR)
+ str = TREE_OPERAND (str, 0);
+
++ if (TREE_CODE (str) == VAR_DECL
++ && TREE_STATIC (str)
++ && TREE_READONLY (str))
++ /* STR may be a 'static const' variable whose initial value
++ is a string constant. See <https://bugs.gnu.org/30395>. */
++ str = DECL_INITIAL (str);
++
+ if (TREE_CODE (str) != STRING_CST)
+ return false;
+
@@ -57,10 +77,32 @@ Guix's GC and its grafting code. See <http://bugs.gnu.org/24703>.
+ /* Do not emit block moves, which translate to the 'movabs' instruction on
+ x86_64, when SRC refers to store items. That way, store references
+ remain visible to the Guix GC and grafting code. See
-+ <http://bugs.gnu.org/24703>. */
++ <https://bugs.gnu.org/24703>. */
+ if (store_reference_p (src))
+ return NULL_RTX;
+
/* If DEST is not a pointer type, call the normal function. */
if (dest_align == 0)
return NULL_RTX;
+
+--- gcc-5.5.0/gcc/gimple-fold.c 2018-03-20 11:36:16.709442004 +0100
++++ gcc-5.5.0/gcc/gimple-fold.c 2018-03-20 11:46:43.838487065 +0100
+@@ -769,6 +769,8 @@ var_decl_component_p (tree var)
+ return SSA_VAR_P (inner);
+ }
+
++extern bool store_reference_p (tree);
++
+ /* Fold function call to builtin mem{{,p}cpy,move}. Return
+ false if no simplification can be made.
+ If ENDP is 0, return DEST (like memcpy).
+@@ -1099,6 +1101,9 @@ gimple_fold_builtin_memory_op (gimple_st
+ if (!srctype)
+ return false;
+
++ if (store_reference_p (src))
++ return false;
++
+ src_align = get_pointer_alignment (src);
+ dest_align = get_pointer_alignment (dest);
+ if (dest_align < TYPE_ALIGN (desttype)
diff --git a/gnu/packages/patches/gegl-CVE-2012-4433.patch b/gnu/packages/patches/gegl-CVE-2012-4433.patch
deleted file mode 100644
index 7352b78dba..0000000000
--- a/gnu/packages/patches/gegl-CVE-2012-4433.patch
+++ /dev/null
@@ -1,117 +0,0 @@
-From: Michael Gilbert <mgilbert@debian.org>
-Date: Mon, 9 Sep 2013 17:34:32 +0200
-Subject: Fix_CVE-2012-4433
-
-Multiple buffer overflow issues.
-
-Closes: #692435
----
- operations/external/ppm-load.c | 62 ++++++++++++++++++++++++++++++++++++------
- 1 file changed, 53 insertions(+), 9 deletions(-)
-
-diff --git a/operations/external/ppm-load.c b/operations/external/ppm-load.c
-index efe6d56..465096d 100644
---- a/operations/external/ppm-load.c
-+++ b/operations/external/ppm-load.c
-@@ -36,6 +36,7 @@ gegl_chant_file_path (path, _("File"), "", _("Path of file to load."))
- #include "gegl-chant.h"
- #include <stdio.h>
- #include <stdlib.h>
-+#include <errno.h>
-
- typedef enum {
- PIXMAP_ASCII = 51,
-@@ -44,8 +45,8 @@ typedef enum {
-
- typedef struct {
- map_type type;
-- gint width;
-- gint height;
-+ glong width;
-+ glong height;
- gsize numsamples; /* width * height * channels */
- gsize bpc; /* bytes per channel */
- guchar *data;
-@@ -82,12 +83,33 @@ ppm_load_read_header(FILE *fp,
- }
-
- /* Get Width and Height */
-- img->width = strtol (header,&ptr,0);
-- img->height = atoi (ptr);
-- img->numsamples = img->width * img->height * CHANNEL_COUNT;
-+ errno = 0;
-+ img->width = strtol (header,&ptr,10);
-+ if (errno)
-+ {
-+ g_warning ("Error reading width: %s", strerror(errno));
-+ return FALSE;
-+ }
-+ else if (img->width < 0)
-+ {
-+ g_warning ("Error: width is negative");
-+ return FALSE;
-+ }
-+
-+ img->height = strtol (ptr,&ptr,10);
-+ if (errno)
-+ {
-+ g_warning ("Error reading height: %s", strerror(errno));
-+ return FALSE;
-+ }
-+ else if (img->width < 0)
-+ {
-+ g_warning ("Error: height is negative");
-+ return FALSE;
-+ }
-
- fgets (header,MAX_CHARS_IN_ROW,fp);
-- maxval = strtol (header,&ptr,0);
-+ maxval = strtol (header,&ptr,10);
-
- if ((maxval != 255) && (maxval != 65535))
- {
-@@ -109,6 +131,16 @@ ppm_load_read_header(FILE *fp,
- g_warning ("%s: Programmer stupidity error", G_STRLOC);
- }
-
-+ /* Later on, img->numsamples is multiplied with img->bpc to allocate
-+ * memory. Ensure it doesn't overflow. */
-+ if (!img->width || !img->height ||
-+ G_MAXSIZE / img->width / img->height / CHANNEL_COUNT < img->bpc)
-+ {
-+ g_warning ("Illegal width/height: %ld/%ld", img->width, img->height);
-+ return FALSE;
-+ }
-+ img->numsamples = img->width * img->height * CHANNEL_COUNT;
-+
- return TRUE;
- }
-
-@@ -229,12 +261,24 @@ process (GeglOperation *operation,
- if (!ppm_load_read_header (fp, &img))
- goto out;
-
-- rect.height = img.height;
-- rect.width = img.width;
--
- /* Allocating Array Size */
-+
-+ /* Should use g_try_malloc(), but this causes crashes elsewhere because the
-+ * error signalled by returning FALSE isn't properly acted upon. Therefore
-+ * g_malloc() is used here which aborts if the requested memory size can't be
-+ * allocated causing a controlled crash. */
- img.data = (guchar*) g_malloc (img.numsamples * img.bpc);
-
-+ /* No-op without g_try_malloc(), see above. */
-+ if (! img.data)
-+ {
-+ g_warning ("Couldn't allocate %" G_GSIZE_FORMAT " bytes, giving up.", ((gsize)img.numsamples * img.bpc));
-+ goto out;
-+ }
-+
-+ rect.height = img.height;
-+ rect.width = img.width;
-+
- switch (img.bpc)
- {
- case 1:
diff --git a/gnu/packages/patches/ghostscript-no-header-id.patch b/gnu/packages/patches/ghostscript-no-header-id.patch
index 19b71aadb5..da1aa5530f 100644
--- a/gnu/packages/patches/ghostscript-no-header-id.patch
+++ b/gnu/packages/patches/ghostscript-no-header-id.patch
@@ -9,7 +9,7 @@ See: https://bugs.ghostscript.com/show_bug.cgi?id=698208
diff -ur orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c
--- orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c 2017-07-09 23:30:28.960479189 +0200
+++ gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c 2017-07-09 23:34:34.306524488 +0200
-@@ -1580,8 +1580,11 @@
+@@ -1785,8 +1785,11 @@
* +1 for the linearisation dict and +1 for the primary hint stream.
*/
linear_params->FirsttrailerOffset = gp_ftell_64(linear_params->Lin_File.file);
@@ -23,10 +23,10 @@ diff -ur orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c gnu-ghostscript-9.
fwrite(LDict, strlen(LDict), 1, linear_params->Lin_File.file);
/* Write document catalog (Part 4) */
-@@ -2102,8 +2105,11 @@
- * in the missing values.
- */
- code = gp_fseek_64(linear_params->sfile, linear_params->FirsttrailerOffset, SEEK_SET);
+@@ -2321,8 +2324,11 @@
+ if (code != 0)
+ return_error(gs_error_ioerror);
+
- gs_sprintf(LDict, "\ntrailer\n<</Size %ld/Info %d 0 R/Root %d 0 R/ID[%s%s]/Prev %"PRId64">>\nstartxref\r\n0\n%%%%EOF\n",
- linear_params->LastResource + 3, pdev->ResourceUsage[linear_params->Info_id].NewObjectNumber, pdev->ResourceUsage[linear_params->Catalog_id].NewObjectNumber, fileID, fileID, mainxref);
+ gs_sprintf(LDict, "\ntrailer\n<</Size %ld/Info %d 0 R/Root %d 0 R",
@@ -37,7 +37,7 @@ diff -ur orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c gnu-ghostscript-9.
fwrite(LDict, strlen(LDict), 1, linear_params->sfile);
code = gp_fseek_64(linear_params->sfile, pdev->ResourceUsage[HintStreamObj].LinearisedOffset, SEEK_SET);
-@@ -2674,10 +2680,12 @@
+@@ -3016,10 +3022,12 @@
stream_puts(s, "trailer\n");
pprintld3(s, "<< /Size %ld /Root %ld 0 R /Info %ld 0 R\n",
pdev->next_id, Catalog_id, Info_id);
@@ -54,4 +54,3 @@ diff -ur orig/gnu-ghostscript-9.14.0/devices/vector/gdevpdf.c gnu-ghostscript-9.
if (pdev->OwnerPassword.size > 0) {
pprintld1(s, "/Encrypt %ld 0 R ", Encrypt_id);
}
-Nur in gnu-ghostscript-9.14.0/devices/vector: gdevpdf.c.orig.
diff --git a/gnu/packages/patches/gimp-CVE-2017-17784.patch b/gnu/packages/patches/gimp-CVE-2017-17784.patch
deleted file mode 100644
index c791772fb5..0000000000
--- a/gnu/packages/patches/gimp-CVE-2017-17784.patch
+++ /dev/null
@@ -1,41 +0,0 @@
-Fix CVE-2017-17784:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17784
-https://bugzilla.gnome.org/show_bug.cgi?id=790784
-
-Patch copied from upstream source repository:
-
-https://git.gnome.org/browse/gimp/commit/?id=c57f9dcf1934a9ab0cd67650f2dea18cb0902270
-
-From c57f9dcf1934a9ab0cd67650f2dea18cb0902270 Mon Sep 17 00:00:00 2001
-From: Jehan <jehan@girinstud.io>
-Date: Thu, 21 Dec 2017 12:25:32 +0100
-Subject: [PATCH] Bug 790784 - (CVE-2017-17784) heap overread in gbr parser /
- load_image.
-
-We were assuming the input name was well formed, hence was
-nul-terminated. As any data coming from external input, this has to be
-thorougly checked.
-Similar to commit 06d24a79af94837d615d0024916bb95a01bf3c59 but adapted
-to older gimp-2-8 code.
----
- plug-ins/common/file-gbr.c | 3 ++-
- 1 file changed, 2 insertions(+), 1 deletion(-)
-
-diff --git a/plug-ins/common/file-gbr.c b/plug-ins/common/file-gbr.c
-index b028100bef..d3f01d9c56 100644
---- a/plug-ins/common/file-gbr.c
-+++ b/plug-ins/common/file-gbr.c
-@@ -443,7 +443,8 @@ load_image (const gchar *filename,
- {
- gchar *temp = g_new (gchar, bn_size);
-
-- if ((read (fd, temp, bn_size)) < bn_size)
-+ if ((read (fd, temp, bn_size)) < bn_size ||
-+ temp[bn_size - 1] != '\0')
- {
- g_set_error (error, G_FILE_ERROR, G_FILE_ERROR_FAILED,
- _("Error in GIMP brush file '%s'"),
---
-2.15.1
-
diff --git a/gnu/packages/patches/gimp-CVE-2017-17785.patch b/gnu/packages/patches/gimp-CVE-2017-17785.patch
deleted file mode 100644
index 939b01f214..0000000000
--- a/gnu/packages/patches/gimp-CVE-2017-17785.patch
+++ /dev/null
@@ -1,171 +0,0 @@
-Fix CVE-2017-17785:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17785
-https://bugzilla.gnome.org/show_bug.cgi?id=739133
-
-Patch copied from upstream source repository:
-
-https://git.gnome.org/browse/gimp/commit/?id=1882bac996a20ab5c15c42b0c5e8f49033a1af54
-
-From 1882bac996a20ab5c15c42b0c5e8f49033a1af54 Mon Sep 17 00:00:00 2001
-From: Tobias Stoeckmann <tobias@stoeckmann.org>
-Date: Sun, 29 Oct 2017 15:19:41 +0100
-Subject: [PATCH] Bug 739133 - (CVE-2017-17785) Heap overflow while parsing FLI
- files.
-
-It is possible to trigger a heap overflow while parsing FLI files. The
-RLE decoder is vulnerable to out of boundary writes due to lack of
-boundary checks.
-
-The variable "framebuf" points to a memory area which was allocated
-with fli_header->width * fli_header->height bytes. The RLE decoder
-therefore must never write beyond that limit.
-
-If an illegal frame is detected, the parser won't stop, which means
-that the next valid sequence is properly parsed again. This should
-allow GIMP to parse FLI files as good as possible even if they are
-broken by an attacker or by accident.
-
-While at it, I changed the variable xc to be of type size_t, because
-the multiplication of width and height could overflow a 16 bit type.
-
-Signed-off-by: Tobias Stoeckmann <tobias@stoeckmann.org>
-(cherry picked from commit edb251a7ef1602d20a5afcbf23f24afb163de63b)
----
- plug-ins/file-fli/fli.c | 50 ++++++++++++++++++++++++++++++++++---------------
- 1 file changed, 35 insertions(+), 15 deletions(-)
-
-diff --git a/plug-ins/file-fli/fli.c b/plug-ins/file-fli/fli.c
-index 313efeb977..ffb651e2af 100644
---- a/plug-ins/file-fli/fli.c
-+++ b/plug-ins/file-fli/fli.c
-@@ -25,6 +25,8 @@
-
- #include "config.h"
-
-+#include <glib/gstdio.h>
-+
- #include <string.h>
- #include <stdio.h>
-
-@@ -461,23 +463,27 @@ void fli_read_brun(FILE *f, s_fli_header *fli_header, unsigned char *framebuf)
- unsigned short yc;
- unsigned char *pos;
- for (yc=0; yc < fli_header->height; yc++) {
-- unsigned short xc, pc, pcnt;
-+ unsigned short pc, pcnt;
-+ size_t n, xc;
- pc=fli_read_char(f);
- xc=0;
- pos=framebuf+(fli_header->width * yc);
-+ n=(size_t)fli_header->width * (fli_header->height-yc);
- for (pcnt=pc; pcnt>0; pcnt--) {
- unsigned short ps;
- ps=fli_read_char(f);
- if (ps & 0x80) {
- unsigned short len;
-- for (len=-(signed char)ps; len>0; len--) {
-+ for (len=-(signed char)ps; len>0 && xc<n; len--) {
- pos[xc++]=fli_read_char(f);
- }
- } else {
- unsigned char val;
-+ size_t len;
-+ len=MIN(n-xc,ps);
- val=fli_read_char(f);
-- memset(&(pos[xc]), val, ps);
-- xc+=ps;
-+ memset(&(pos[xc]), val, len);
-+ xc+=len;
- }
- }
- }
-@@ -564,25 +570,34 @@ void fli_read_lc(FILE *f, s_fli_header *fli_header, unsigned char *old_framebuf,
- memcpy(framebuf, old_framebuf, fli_header->width * fli_header->height);
- firstline = fli_read_short(f);
- numline = fli_read_short(f);
-+ if (numline > fli_header->height || fli_header->height-numline < firstline)
-+ return;
-+
- for (yc=0; yc < numline; yc++) {
-- unsigned short xc, pc, pcnt;
-+ unsigned short pc, pcnt;
-+ size_t n, xc;
- pc=fli_read_char(f);
- xc=0;
- pos=framebuf+(fli_header->width * (firstline+yc));
-+ n=(size_t)fli_header->width * (fli_header->height-firstline-yc);
- for (pcnt=pc; pcnt>0; pcnt--) {
- unsigned short ps,skip;
- skip=fli_read_char(f);
- ps=fli_read_char(f);
-- xc+=skip;
-+ xc+=MIN(n-xc,skip);
- if (ps & 0x80) {
- unsigned char val;
-+ size_t len;
- ps=-(signed char)ps;
- val=fli_read_char(f);
-- memset(&(pos[xc]), val, ps);
-- xc+=ps;
-+ len=MIN(n-xc,ps);
-+ memset(&(pos[xc]), val, len);
-+ xc+=len;
- } else {
-- fread(&(pos[xc]), ps, 1, f);
-- xc+=ps;
-+ size_t len;
-+ len=MIN(n-xc,ps);
-+ fread(&(pos[xc]), len, 1, f);
-+ xc+=len;
- }
- }
- }
-@@ -689,7 +704,8 @@ void fli_read_lc_2(FILE *f, s_fli_header *fli_header, unsigned char *old_framebu
- yc=0;
- numline = fli_read_short(f);
- for (lc=0; lc < numline; lc++) {
-- unsigned short xc, pc, pcnt, lpf, lpn;
-+ unsigned short pc, pcnt, lpf, lpn;
-+ size_t n, xc;
- pc=fli_read_short(f);
- lpf=0; lpn=0;
- while (pc & 0x8000) {
-@@ -700,26 +716,30 @@ void fli_read_lc_2(FILE *f, s_fli_header *fli_header, unsigned char *old_framebu
- }
- pc=fli_read_short(f);
- }
-+ yc=MIN(yc, fli_header->height);
- xc=0;
- pos=framebuf+(fli_header->width * yc);
-+ n=(size_t)fli_header->width * (fli_header->height-yc);
- for (pcnt=pc; pcnt>0; pcnt--) {
- unsigned short ps,skip;
- skip=fli_read_char(f);
- ps=fli_read_char(f);
-- xc+=skip;
-+ xc+=MIN(n-xc,skip);
- if (ps & 0x80) {
- unsigned char v1,v2;
- ps=-(signed char)ps;
- v1=fli_read_char(f);
- v2=fli_read_char(f);
-- while (ps>0) {
-+ while (ps>0 && xc+1<n) {
- pos[xc++]=v1;
- pos[xc++]=v2;
- ps--;
- }
- } else {
-- fread(&(pos[xc]), ps, 2, f);
-- xc+=ps << 1;
-+ size_t len;
-+ len=MIN((n-xc)/2,ps);
-+ fread(&(pos[xc]), len, 2, f);
-+ xc+=len << 1;
- }
- }
- if (lpf) pos[xc]=lpn;
---
-2.15.1
-
diff --git a/gnu/packages/patches/gimp-CVE-2017-17786.patch b/gnu/packages/patches/gimp-CVE-2017-17786.patch
deleted file mode 100644
index 851227ac1d..0000000000
--- a/gnu/packages/patches/gimp-CVE-2017-17786.patch
+++ /dev/null
@@ -1,94 +0,0 @@
-Fix CVE-2017-17786:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17786
-https://bugzilla.gnome.org/show_bug.cgi?id=739134
-
-Both patches copied from upstream source repository:
-
-https://git.gnome.org/browse/gimp/commit/?id=ef9c821fff8b637a2178eab1c78cae6764c50e12
-https://git.gnome.org/browse/gimp/commit/?id=22e2571c25425f225abdb11a566cc281fca6f366
-
-From ef9c821fff8b637a2178eab1c78cae6764c50e12 Mon Sep 17 00:00:00 2001
-From: Jehan <jehan@girinstud.io>
-Date: Wed, 20 Dec 2017 13:02:38 +0100
-Subject: [PATCH] Bug 739134 - (CVE-2017-17786) Out of bounds read / heap
- overflow in...
-MIME-Version: 1.0
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-
-... TGA importer.
-
-Be more thorough on valid TGA RGB and RGBA images.
-In particular current TGA plug-in can import RGBA as 32 bits (8 bits per
-channel) and 16 bits (5 bits per color channel and 1 bit for alpha), and
-RGB as 15 and 24 bits.
-Maybe there exist more variants, but if they do exist, we simply don't
-support them yet.
-
-Thanks to Hanno Böck for the report and a first patch attempt.
-
-(cherry picked from commit 674b62ad45b6579ec6d7923dc3cb1ef4e8b5498b)
----
- plug-ins/common/file-tga.c | 12 ++++++++----
- 1 file changed, 8 insertions(+), 4 deletions(-)
-
-diff --git a/plug-ins/common/file-tga.c b/plug-ins/common/file-tga.c
-index aef98702d4..426acc2925 100644
---- a/plug-ins/common/file-tga.c
-+++ b/plug-ins/common/file-tga.c
-@@ -564,12 +564,16 @@ load_image (const gchar *filename,
- }
- break;
- case TGA_TYPE_COLOR:
-- if (info.bpp != 15 && info.bpp != 16 &&
-- info.bpp != 24 && info.bpp != 32)
-+ if ((info.bpp != 15 && info.bpp != 16 &&
-+ info.bpp != 24 && info.bpp != 32) ||
-+ ((info.bpp == 15 || info.bpp == 24) &&
-+ info.alphaBits != 0) ||
-+ (info.bpp == 16 && info.alphaBits != 1) ||
-+ (info.bpp == 32 && info.alphaBits != 8))
- {
-- g_message ("Unhandled sub-format in '%s' (type = %u, bpp = %u)",
-+ g_message ("Unhandled sub-format in '%s' (type = %u, bpp = %u, alpha = %u)",
- gimp_filename_to_utf8 (filename),
-- info.imageType, info.bpp);
-+ info.imageType, info.bpp, info.alphaBits);
- return -1;
- }
- break;
---
-2.15.1
-
-From 22e2571c25425f225abdb11a566cc281fca6f366 Mon Sep 17 00:00:00 2001
-From: Jehan <jehan@girinstud.io>
-Date: Wed, 20 Dec 2017 13:26:26 +0100
-Subject: [PATCH] plug-ins: TGA 16-bit RGB (without alpha bit) is also valid.
-
-According to some spec on the web, 16-bit RGB is also valid. In this
-case, the last bit is simply ignored (at least that's how it is
-implemented right now).
-
-(cherry picked from commit 8ea316667c8a3296bce2832b3986b58d0fdfc077)
----
- plug-ins/common/file-tga.c | 3 ++-
- 1 file changed, 2 insertions(+), 1 deletion(-)
-
-diff --git a/plug-ins/common/file-tga.c b/plug-ins/common/file-tga.c
-index 426acc2925..eb14a1dadc 100644
---- a/plug-ins/common/file-tga.c
-+++ b/plug-ins/common/file-tga.c
-@@ -568,7 +568,8 @@ load_image (const gchar *filename,
- info.bpp != 24 && info.bpp != 32) ||
- ((info.bpp == 15 || info.bpp == 24) &&
- info.alphaBits != 0) ||
-- (info.bpp == 16 && info.alphaBits != 1) ||
-+ (info.bpp == 16 && info.alphaBits != 1 &&
-+ info.alphaBits != 0) ||
- (info.bpp == 32 && info.alphaBits != 8))
- {
- g_message ("Unhandled sub-format in '%s' (type = %u, bpp = %u, alpha = %u)",
---
-2.15.1
-
diff --git a/gnu/packages/patches/gimp-CVE-2017-17787.patch b/gnu/packages/patches/gimp-CVE-2017-17787.patch
deleted file mode 100644
index b5310d33d9..0000000000
--- a/gnu/packages/patches/gimp-CVE-2017-17787.patch
+++ /dev/null
@@ -1,42 +0,0 @@
-Fix CVE-2017-17787:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17787
-https://bugzilla.gnome.org/show_bug.cgi?id=790853
-
-Patch copied from upstream source repository:
-
-https://git.gnome.org/browse/gimp/commit/?id=87ba505fff85989af795f4ab6a047713f4d9381d
-
-From 87ba505fff85989af795f4ab6a047713f4d9381d Mon Sep 17 00:00:00 2001
-From: Jehan <jehan@girinstud.io>
-Date: Thu, 21 Dec 2017 12:49:41 +0100
-Subject: [PATCH] Bug 790853 - (CVE-2017-17787) heap overread in psp importer.
-
-As any external data, we have to check that strings being read at fixed
-length are properly nul-terminated.
-
-(cherry picked from commit eb2980683e6472aff35a3117587c4f814515c74d)
----
- plug-ins/common/file-psp.c | 6 ++++++
- 1 file changed, 6 insertions(+)
-
-diff --git a/plug-ins/common/file-psp.c b/plug-ins/common/file-psp.c
-index 4cbafe37b1..e350e4d88d 100644
---- a/plug-ins/common/file-psp.c
-+++ b/plug-ins/common/file-psp.c
-@@ -890,6 +890,12 @@ read_creator_block (FILE *f,
- g_free (string);
- return -1;
- }
-+ if (string[length - 1] != '\0')
-+ {
-+ g_message ("Creator keyword data not nul-terminated");
-+ g_free (string);
-+ return -1;
-+ }
- switch (keyword)
- {
- case PSP_CRTR_FLD_TITLE:
---
-2.15.1
-
diff --git a/gnu/packages/patches/gimp-CVE-2017-17789.patch b/gnu/packages/patches/gimp-CVE-2017-17789.patch
deleted file mode 100644
index 6dfa435fd0..0000000000
--- a/gnu/packages/patches/gimp-CVE-2017-17789.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-Fix CVE-2017-17789:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17789
-https://bugzilla.gnome.org/show_bug.cgi?id=790849
-
-Patch copied from upstream source repository:
-
-https://git.gnome.org/browse/gimp/commit/?id=01898f10f87a094665a7fdcf7153990f4e511d3f
-
-From 01898f10f87a094665a7fdcf7153990f4e511d3f Mon Sep 17 00:00:00 2001
-From: Jehan <jehan@girinstud.io>
-Date: Wed, 20 Dec 2017 16:44:20 +0100
-Subject: [PATCH] Bug 790849 - (CVE-2017-17789) CVE-2017-17789 Heap buffer
- overflow...
-
-... in PSP importer.
-Check if declared block length is valid (i.e. within the actual file)
-before going further.
-Consider the file as broken otherwise and fail loading it.
-
-(cherry picked from commit 28e95fbeb5720e6005a088fa811f5bf3c1af48b8)
----
- plug-ins/common/file-psp.c | 9 +++++++++
- 1 file changed, 9 insertions(+)
-
-diff --git a/plug-ins/common/file-psp.c b/plug-ins/common/file-psp.c
-index ac0fff78f0..4cbafe37b1 100644
---- a/plug-ins/common/file-psp.c
-+++ b/plug-ins/common/file-psp.c
-@@ -1771,6 +1771,15 @@ load_image (const gchar *filename,
- {
- block_start = ftell (f);
-
-+ if (block_start + block_total_len > st.st_size)
-+ {
-+ g_set_error (error, G_FILE_ERROR, G_FILE_ERROR_FAILED,
-+ _("Could not open '%s' for reading: %s"),
-+ gimp_filename_to_utf8 (filename),
-+ _("invalid block size"));
-+ goto error;
-+ }
-+
- if (id == PSP_IMAGE_BLOCK)
- {
- if (block_number != 0)
---
-2.15.1
-
diff --git a/gnu/packages/patches/glib-respect-datadir.patch b/gnu/packages/patches/glib-respect-datadir.patch
deleted file mode 100644
index 309ce9fc0b..0000000000
--- a/gnu/packages/patches/glib-respect-datadir.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-On Guix, Python modules are in a different output from the executables,
-so searching "../share/glib-2.0" will not work.
-
-This patch restores behaviour prior to this commit:
-<https://git.gnome.org/browse/glib/commit/?id=fe2a9887a8ccb14f2386e01b14834e97a33bc2d7>
-
---- a/gio/gdbus-2.0/codegen/gdbus-codegen.in
-+++ b/gio/gdbus-2.0/codegen/gdbus-codegen.in
-@@ -25,9 +25,12 @@
-
- srcdir = os.getenv('UNINSTALLED_GLIB_SRCDIR', None)
- filedir = os.path.dirname(__file__)
-+datadir = os.path.join('@datadir@', 'glib-2.0')
-
- if srcdir is not None:
- path = os.path.join(srcdir, 'gio', 'gdbus-2.0')
-+elif os.path.exists(os.path.join(datadir, 'codegen')):
-+ path = datadir
- elif os.path.basename(filedir) == 'bin':
- # Make the prefix containing gdbus-codegen 'relocatable' at runtime by
- # adding /some/prefix/bin/../share/glib-2.0 to the python path
diff --git a/gnu/packages/patches/glibc-2.27-git-fixes.patch b/gnu/packages/patches/glibc-2.27-git-fixes.patch
new file mode 100644
index 0000000000..4ed67c7c25
--- /dev/null
+++ b/gnu/packages/patches/glibc-2.27-git-fixes.patch
@@ -0,0 +1,702 @@
+These commits are cherry-picked from the "release/2.27/master" branch.
+
+https://sourceware.org/git/?p=glibc.git;a=shortlog;h=refs/heads/release/2.27/master
+
+Currently, we have the following (with NEWS and ChangeLog entries omitted).
+
+56170e064e2b21ce204f0817733e92f1730541ea
+516fa6080481a1433c173320b1c1432868e1e38a
+f36553bf6a4f69070f99badbdab5802b43e6e211
+7c6304182b9f422b782ace1cdd3efbde056aec36
+78a90c2f74a2012dd3eff302189e47ff6779a757
+1e52d8e65a58c49a48549053a1b89c06240e0c6c
+55ad82e45c313454de657931898e974a7a036cad
+
+From 56170e064e2b21ce204f0817733e92f1730541ea Mon Sep 17 00:00:00 2001
+From: Igor Gnatenko <ignatenko@redhat.com>
+Date: Wed, 7 Feb 2018 13:53:10 +0100
+Subject: [PATCH] Linux: use reserved name __key in pkey_get [BZ #22797]
+
+_key is not reserved name and we should avoid using that. It seems that
+it was simple typo when pkey_* was implemented.
+
+(cherry picked from commit 388ff7bd0d57d7061fdd39a2f26f65687e8058da)
+
+diff --git a/sysdeps/unix/sysv/linux/bits/mman-shared.h b/sysdeps/unix/sysv/linux/bits/mman-shared.h
+index 7715e680ca..d15ba95c9d 100644
+--- a/sysdeps/unix/sysv/linux/bits/mman-shared.h
++++ b/sysdeps/unix/sysv/linux/bits/mman-shared.h
+@@ -61,7 +61,7 @@ int pkey_set (int __key, unsigned int __access_rights) __THROW;
+
+ /* Return the access rights for the current thread for KEY, which must
+ have been allocated using pkey_alloc. */
+-int pkey_get (int _key) __THROW;
++int pkey_get (int __key) __THROW;
+
+ /* Free an allocated protection key, which must have been allocated
+ using pkey_alloc. */
+
+From 516fa6080481a1433c173320b1c1432868e1e38a Mon Sep 17 00:00:00 2001
+From: "Dmitry V. Levin" <ldv@altlinux.org>
+Date: Fri, 29 Dec 2017 23:19:32 +0000
+Subject: [PATCH] linux/aarch64: sync sys/ptrace.h with Linux 4.15 [BZ #22433]
+
+Remove compat-specific constants that were never exported by kernel
+headers under these names. Before linux commit v3.7-rc1~16^2~1 they
+were exported with COMPAT_ prefix, and since that commit they are not
+exported at all.
+
+* sysdeps/unix/sysv/linux/aarch64/sys/ptrace.h (__ptrace_request):
+Remove arm-specific PTRACE_GET_THREAD_AREA, PTRACE_GETHBPREGS,
+and PTRACE_SETHBPREGS.
+
+(cherry picked from commit 2fd4bbaa1446f1be700e10c526cf585a796c4991)
+
+diff --git a/sysdeps/unix/sysv/linux/aarch64/sys/ptrace.h b/sysdeps/unix/sysv/linux/aarch64/sys/ptrace.h
+index 4be45b95ff..444edbb702 100644
+--- a/sysdeps/unix/sysv/linux/aarch64/sys/ptrace.h
++++ b/sysdeps/unix/sysv/linux/aarch64/sys/ptrace.h
+@@ -78,18 +78,10 @@ enum __ptrace_request
+ PTRACE_DETACH = 17,
+ #define PT_DETACH PTRACE_DETACH
+
+- PTRACE_GET_THREAD_AREA = 22,
+-
+ /* Continue and stop at the next entry to or return from syscall. */
+ PTRACE_SYSCALL = 24,
+ #define PT_SYSCALL PTRACE_SYSCALL
+
+- /* Get all hardware breakpoint registers. */
+- PTRACE_GETHBPREGS = 29,
+-
+- /* Set all hardware breakpoint registers. */
+- PTRACE_SETHBPREGS = 30,
+-
+ /* Set ptrace filter options. */
+ PTRACE_SETOPTIONS = 0x4200,
+ #define PT_SETOPTIONS PTRACE_SETOPTIONS
+
+From f36553bf6a4f69070f99badbdab5802b43e6e211 Mon Sep 17 00:00:00 2001
+From: Mike FABIAN <mfabian@redhat.com>
+Date: Mon, 19 Feb 2018 21:59:30 +0100
+Subject: [PATCH] =?UTF-8?q?Add=20missing=20=E2=80=9Creorder-end=E2=80=9D?=
+ =?UTF-8?q?=20in=20LC=5FCOLLATE=20of=20et=5FEE=20[BZ=20#22517]?=
+MIME-Version: 1.0
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+
+ [BZ #22517]
+ * localedata/locales/et_EE (LC_COLLATE): add missing “reorder-end”
+
+(cherry picked from commit 7ec5f9465e732e668d0dc94ac078ba68056d6d0a)
+
+diff --git a/localedata/locales/et_EE b/localedata/locales/et_EE
+index 9cb55b568f..bab7493c98 100644
+--- a/localedata/locales/et_EE
++++ b/localedata/locales/et_EE
+@@ -103,6 +103,8 @@ reorder-after <w>
+ <U00FC> <u-diaresis>;<BAS>;<MIN>;IGNORE % ü
+ <U00DC> <u-diaresis>;<BAS>;<CAP>;IGNORE % Ü
+
++reorder-end
++
+ END LC_COLLATE
+
+ LC_CTYPE
+
+From 7c6304182b9f422b782ace1cdd3efbde056aec36 Mon Sep 17 00:00:00 2001
+From: DJ Delorie <dj@redhat.com>
+Date: Thu, 1 Mar 2018 23:20:45 -0500
+Subject: [PATCH] [BZ #22342] Fix netgroup cache keys.
+
+Unlike other nscd caches, the netgroup cache contains two types of
+records - those for "iterate through a netgroup" (i.e. setnetgrent())
+and those for "is this user in this netgroup" (i.e. innetgr()),
+i.e. full and partial records. The timeout code assumes these records
+have the same key for the group name, so that the collection of records
+that is "this netgroup" can be expired as a unit.
+
+However, the keys are not the same, as the in-netgroup key is generated
+by nscd rather than being passed to it from elsewhere, and is generated
+without the trailing NUL. All other keys have the trailing NUL, and as
+noted in the linked BZ, debug statements confirm that two keys for the
+same netgroup are added to the cache with two different lengths.
+
+The result of this is that as records in the cache expire, the purge
+code only cleans out one of the two types of entries, resulting in
+stale, possibly incorrect, and possibly inconsistent cache data.
+
+The patch simply includes the existing NUL in the computation for the
+key length ('key' points to the char after the NUL, and 'group' to the
+first char of the group, so 'key-group' includes the first char to the
+NUL, inclusive).
+
+ [BZ #22342]
+ * nscd/netgroupcache.c (addinnetgrX): Include trailing NUL in
+ key value.
+
+Reviewed-by: Carlos O'Donell <carlos@redhat.com>
+(cherry picked from commit 1c81d55fc4b07b51adf68558ba74ce975153e580)
+
+diff --git a/nscd/netgroupcache.c b/nscd/netgroupcache.c
+index b832c9315f..2f187b208c 100644
+--- a/nscd/netgroupcache.c
++++ b/nscd/netgroupcache.c
+@@ -480,7 +480,7 @@ addinnetgrX (struct database_dyn *db, int fd, request_header *req,
+ {
+ const char *group = key;
+ key = (char *) rawmemchr (key, '\0') + 1;
+- size_t group_len = key - group - 1;
++ size_t group_len = key - group;
+ const char *host = *key++ ? key : NULL;
+ if (host != NULL)
+ key = (char *) rawmemchr (key, '\0') + 1;
+
+From 78a90c2f74a2012dd3eff302189e47ff6779a757 Mon Sep 17 00:00:00 2001
+From: Andreas Schwab <schwab@linux-m68k.org>
+Date: Fri, 2 Mar 2018 23:07:14 +0100
+Subject: [PATCH] Fix multiple definitions of __nss_*_database (bug 22918)
+
+(cherry picked from commit eaf6753f8aac33a36deb98c1031d1bad7b593d2d)
+
+diff --git a/nscd/gai.c b/nscd/gai.c
+index d081747797..576fd0045b 100644
+--- a/nscd/gai.c
++++ b/nscd/gai.c
+@@ -45,3 +45,6 @@
+ #ifdef HAVE_LIBIDN
+ # include <libidn/idn-stub.c>
+ #endif
++
++/* Some variables normally defined in libc. */
++service_user *__nss_hosts_database attribute_hidden;
+diff --git a/nss/nsswitch.c b/nss/nsswitch.c
+index d5e655974f..b0f0c11a3e 100644
+--- a/nss/nsswitch.c
++++ b/nss/nsswitch.c
+@@ -62,7 +62,7 @@ static service_library *nss_new_service (name_database *database,
+
+ /* Declare external database variables. */
+ #define DEFINE_DATABASE(name) \
+- extern service_user *__nss_##name##_database attribute_hidden; \
++ service_user *__nss_##name##_database attribute_hidden; \
+ weak_extern (__nss_##name##_database)
+ #include "databases.def"
+ #undef DEFINE_DATABASE
+diff --git a/nss/nsswitch.h b/nss/nsswitch.h
+index eccb535ef5..63573b9ebc 100644
+--- a/nss/nsswitch.h
++++ b/nss/nsswitch.h
+@@ -226,10 +226,10 @@ libc_hidden_proto (__nss_hostname_digits_dots)
+ #define MAX_NR_ADDRS 48
+
+ /* Prototypes for __nss_*_lookup2 functions. */
+-#define DEFINE_DATABASE(arg) \
+- service_user *__nss_##arg##_database attribute_hidden; \
+- int __nss_##arg##_lookup2 (service_user **, const char *, \
+- const char *, void **); \
++#define DEFINE_DATABASE(arg) \
++ extern service_user *__nss_##arg##_database attribute_hidden; \
++ int __nss_##arg##_lookup2 (service_user **, const char *, \
++ const char *, void **); \
+ libc_hidden_proto (__nss_##arg##_lookup2)
+ #include "databases.def"
+ #undef DEFINE_DATABASE
+diff --git a/posix/tst-rfc3484-2.c b/posix/tst-rfc3484-2.c
+index f509534ca9..8c64ac59ff 100644
+--- a/posix/tst-rfc3484-2.c
++++ b/posix/tst-rfc3484-2.c
+@@ -58,6 +58,7 @@ _res_hconf_init (void)
+ #undef USE_NSCD
+ #include "../sysdeps/posix/getaddrinfo.c"
+
++service_user *__nss_hosts_database attribute_hidden;
+
+ /* This is the beginning of the real test code. The above defines
+ (among other things) the function rfc3484_sort. */
+diff --git a/posix/tst-rfc3484-3.c b/posix/tst-rfc3484-3.c
+index ae44087a10..1c61aaf844 100644
+--- a/posix/tst-rfc3484-3.c
++++ b/posix/tst-rfc3484-3.c
+@@ -58,6 +58,7 @@ _res_hconf_init (void)
+ #undef USE_NSCD
+ #include "../sysdeps/posix/getaddrinfo.c"
+
++service_user *__nss_hosts_database attribute_hidden;
+
+ /* This is the beginning of the real test code. The above defines
+ (among other things) the function rfc3484_sort. */
+diff --git a/posix/tst-rfc3484.c b/posix/tst-rfc3484.c
+index 7f191abbbc..8f45848e44 100644
+--- a/posix/tst-rfc3484.c
++++ b/posix/tst-rfc3484.c
+@@ -58,6 +58,7 @@ _res_hconf_init (void)
+ #undef USE_NSCD
+ #include "../sysdeps/posix/getaddrinfo.c"
+
++service_user *__nss_hosts_database attribute_hidden;
+
+ /* This is the beginning of the real test code. The above defines
+ (among other things) the function rfc3484_sort. */
+
+From 1e52d8e65a58c49a48549053a1b89c06240e0c6c Mon Sep 17 00:00:00 2001
+From: Adhemerval Zanella <adhemerval.zanella@linaro.org>
+Date: Fri, 17 Nov 2017 16:04:29 -0200
+Subject: [PATCH] i386: Fix i386 sigaction sa_restorer initialization
+ (BZ#21269)
+
+This patch fixes the i386 sa_restorer field initialization for sigaction
+syscall for kernel with vDSO. As described in bug report, i386 Linux
+(and compat on x86_64) interprets SA_RESTORER clear with nonzero
+sa_restorer as a request for stack switching if the SS segment is 'funny'.
+This means that anything that tries to mix glibc's signal handling with
+segmentation (for instance through modify_ldt syscall) is randomly broken
+depending on what values lands in sa_restorer.
+
+The testcase added is based on Linux test tools/testing/selftests/x86/ldt_gdt.c,
+more specifically in do_multicpu_tests function. The main changes are:
+
+ - C11 atomics instead of plain access.
+
+ - Remove x86_64 support which simplifies the syscall handling and fallbacks.
+
+ - Replicate only the test required to trigger the issue.
+
+Checked on i686-linux-gnu.
+
+ [BZ #21269]
+ * sysdeps/unix/sysv/linux/i386/Makefile (tests): Add tst-bz21269.
+ * sysdeps/unix/sysv/linux/i386/sigaction.c (SET_SA_RESTORER): Clear
+ sa_restorer for vDSO case.
+ * sysdeps/unix/sysv/linux/i386/tst-bz21269.c: New file.
+
+(cherry picked from commit 68448be208ee06e76665918b37b0a57e3e00c8b4)
+
+diff --git a/sysdeps/unix/sysv/linux/i386/Makefile b/sysdeps/unix/sysv/linux/i386/Makefile
+index 4080b8c966..da716e2c1b 100644
+--- a/sysdeps/unix/sysv/linux/i386/Makefile
++++ b/sysdeps/unix/sysv/linux/i386/Makefile
+@@ -3,6 +3,9 @@ default-abi := 32
+
+ ifeq ($(subdir),misc)
+ sysdep_routines += ioperm iopl vm86
++
++tests += tst-bz21269
++$(objpfx)tst-bz21269: $(shared-thread-library)
+ endif
+
+ ifeq ($(subdir),elf)
+diff --git a/sysdeps/unix/sysv/linux/i386/sigaction.c b/sysdeps/unix/sysv/linux/i386/sigaction.c
+index a5eb9e0d3e..177ff60ee6 100644
+--- a/sysdeps/unix/sysv/linux/i386/sigaction.c
++++ b/sysdeps/unix/sysv/linux/i386/sigaction.c
+@@ -42,7 +42,6 @@ extern void restore_rt (void) asm ("__restore_rt") attribute_hidden;
+ #endif
+ extern void restore (void) asm ("__restore") attribute_hidden;
+
+-
+ /* If ACT is not NULL, change the action for SIG to *ACT.
+ If OACT is not NULL, put the old action for SIG in *OACT. */
+ int
+@@ -65,6 +64,8 @@ __libc_sigaction (int sig, const struct sigaction *act, struct sigaction *oact)
+ kact.sa_restorer = ((act->sa_flags & SA_SIGINFO)
+ ? &restore_rt : &restore);
+ }
++ else
++ kact.sa_restorer = NULL;
+ }
+
+ /* XXX The size argument hopefully will have to be changed to the
+diff --git a/sysdeps/unix/sysv/linux/i386/tst-bz21269.c b/sysdeps/unix/sysv/linux/i386/tst-bz21269.c
+new file mode 100644
+index 0000000000..353e36507d
+--- /dev/null
++++ b/sysdeps/unix/sysv/linux/i386/tst-bz21269.c
+@@ -0,0 +1,233 @@
++/* Test for i386 sigaction sa_restorer handling (BZ#21269)
++ Copyright (C) 2017 Free Software Foundation, Inc.
++ This file is part of the GNU C Library.
++
++ The GNU C Library is free software; you can redistribute it and/or
++ modify it under the terms of the GNU Lesser General Public
++ License as published by the Free Software Foundation; either
++ version 2.1 of the License, or (at your option) any later version.
++
++ The GNU C Library is distributed in the hope that it will be useful,
++ but WITHOUT ANY WARRANTY; without even the implied warranty of
++ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
++ Lesser General Public License for more details.
++
++ You should have received a copy of the GNU Lesser General Public
++ License along with the GNU C Library; if not, see
++ <http://www.gnu.org/licenses/>. */
++
++/* This is based on Linux test tools/testing/selftests/x86/ldt_gdt.c,
++ more specifically in do_multicpu_tests function. The main changes
++ are:
++
++ - C11 atomics instead of plain access.
++ - Remove x86_64 support which simplifies the syscall handling
++ and fallbacks.
++ - Replicate only the test required to trigger the issue for the
++ BZ#21269. */
++
++#include <stdatomic.h>
++
++#include <asm/ldt.h>
++#include <linux/futex.h>
++
++#include <setjmp.h>
++#include <signal.h>
++#include <errno.h>
++#include <sys/syscall.h>
++#include <sys/mman.h>
++
++#include <support/xunistd.h>
++#include <support/check.h>
++#include <support/xthread.h>
++
++static int
++xset_thread_area (struct user_desc *u_info)
++{
++ long ret = syscall (SYS_set_thread_area, u_info);
++ TEST_VERIFY_EXIT (ret == 0);
++ return ret;
++}
++
++static void
++xmodify_ldt (int func, const void *ptr, unsigned long bytecount)
++{
++ TEST_VERIFY_EXIT (syscall (SYS_modify_ldt, 1, ptr, bytecount) == 0);
++}
++
++static int
++futex (int *uaddr, int futex_op, int val, void *timeout, int *uaddr2,
++ int val3)
++{
++ return syscall (SYS_futex, uaddr, futex_op, val, timeout, uaddr2, val3);
++}
++
++static void
++xsethandler (int sig, void (*handler)(int, siginfo_t *, void *), int flags)
++{
++ struct sigaction sa = { 0 };
++ sa.sa_sigaction = handler;
++ sa.sa_flags = SA_SIGINFO | flags;
++ TEST_VERIFY_EXIT (sigemptyset (&sa.sa_mask) == 0);
++ TEST_VERIFY_EXIT (sigaction (sig, &sa, 0) == 0);
++}
++
++static jmp_buf jmpbuf;
++
++static void
++sigsegv_handler (int sig, siginfo_t *info, void *ctx_void)
++{
++ siglongjmp (jmpbuf, 1);
++}
++
++/* Points to an array of 1024 ints, each holding its own index. */
++static const unsigned int *counter_page;
++static struct user_desc *low_user_desc;
++static struct user_desc *low_user_desc_clear; /* Used to delete GDT entry. */
++static int gdt_entry_num;
++
++static void
++setup_counter_page (void)
++{
++ long page_size = sysconf (_SC_PAGE_SIZE);
++ TEST_VERIFY_EXIT (page_size > 0);
++ unsigned int *page = xmmap (NULL, page_size, PROT_READ | PROT_WRITE,
++ MAP_ANONYMOUS | MAP_PRIVATE | MAP_32BIT, -1);
++ for (int i = 0; i < (page_size / sizeof (unsigned int)); i++)
++ page[i] = i;
++ counter_page = page;
++}
++
++static void
++setup_low_user_desc (void)
++{
++ low_user_desc = xmmap (NULL, 2 * sizeof (struct user_desc),
++ PROT_READ | PROT_WRITE,
++ MAP_ANONYMOUS | MAP_PRIVATE | MAP_32BIT, -1);
++
++ low_user_desc->entry_number = -1;
++ low_user_desc->base_addr = (unsigned long) &counter_page[1];
++ low_user_desc->limit = 0xffff;
++ low_user_desc->seg_32bit = 1;
++ low_user_desc->contents = 0;
++ low_user_desc->read_exec_only = 0;
++ low_user_desc->limit_in_pages = 1;
++ low_user_desc->seg_not_present = 0;
++ low_user_desc->useable = 0;
++
++ xset_thread_area (low_user_desc);
++
++ low_user_desc_clear = low_user_desc + 1;
++ low_user_desc_clear->entry_number = gdt_entry_num;
++ low_user_desc_clear->read_exec_only = 1;
++ low_user_desc_clear->seg_not_present = 1;
++}
++
++/* Possible values of futex:
++ 0: thread is idle.
++ 1: thread armed.
++ 2: thread should clear LDT entry 0.
++ 3: thread should exit. */
++static atomic_uint ftx;
++
++static void *
++threadproc (void *ctx)
++{
++ while (1)
++ {
++ futex ((int *) &ftx, FUTEX_WAIT, 1, NULL, NULL, 0);
++ while (atomic_load (&ftx) != 2)
++ {
++ if (atomic_load (&ftx) >= 3)
++ return NULL;
++ }
++
++ /* clear LDT entry 0. */
++ const struct user_desc desc = { 0 };
++ xmodify_ldt (1, &desc, sizeof (desc));
++
++ /* If ftx == 2, set it to zero, If ftx == 100, quit. */
++ if (atomic_fetch_add (&ftx, -2) != 2)
++ return NULL;
++ }
++}
++
++
++/* As described in testcase, for historical reasons x86_32 Linux (and compat
++ on x86_64) interprets SA_RESTORER clear with nonzero sa_restorer as a
++ request for stack switching if the SS segment is 'funny' (this is default
++ scenario for vDSO system). This means that anything that tries to mix
++ signal handling with segmentation should explicit clear the sa_restorer.
++
++ This testcase check if sigaction in fact does it by changing the local
++ descriptor table (LDT) through the modify_ldt syscall and triggering
++ a synchronous segfault on iret fault by trying to install an invalid
++ segment. With a correct zeroed sa_restorer it should not trigger an
++ 'real' SEGSEGV and allows the siglongjmp in signal handler. */
++
++static int
++do_test (void)
++{
++ setup_counter_page ();
++ setup_low_user_desc ();
++
++ pthread_t thread;
++ unsigned short orig_ss;
++
++ xsethandler (SIGSEGV, sigsegv_handler, 0);
++ /* 32-bit kernels send SIGILL instead of SIGSEGV on IRET faults. */
++ xsethandler (SIGILL, sigsegv_handler, 0);
++
++ thread = xpthread_create (0, threadproc, 0);
++
++ asm volatile ("mov %%ss, %0" : "=rm" (orig_ss));
++
++ for (int i = 0; i < 5; i++)
++ {
++ if (sigsetjmp (jmpbuf, 1) != 0)
++ continue;
++
++ /* Make sure the thread is ready after the last test. */
++ while (atomic_load (&ftx) != 0)
++ ;
++
++ struct user_desc desc = {
++ .entry_number = 0,
++ .base_addr = 0,
++ .limit = 0xffff,
++ .seg_32bit = 1,
++ .contents = 0,
++ .read_exec_only = 0,
++ .limit_in_pages = 1,
++ .seg_not_present = 0,
++ .useable = 0
++ };
++
++ xmodify_ldt (0x11, &desc, sizeof (desc));
++
++ /* Arm the thread. */
++ ftx = 1;
++ futex ((int*) &ftx, FUTEX_WAKE, 0, NULL, NULL, 0);
++
++ asm volatile ("mov %0, %%ss" : : "r" (0x7));
++
++ /* Fire up thread modify_ldt call. */
++ atomic_store (&ftx, 2);
++
++ while (atomic_load (&ftx) != 0)
++ ;
++
++ /* On success, modify_ldt will segfault us synchronously and we will
++ escape via siglongjmp. */
++ support_record_failure ();
++ }
++
++ atomic_store (&ftx, 100);
++ futex ((int*) &ftx, FUTEX_WAKE, 0, NULL, NULL, 0);
++
++ xpthread_join (thread);
++
++ return 0;
++}
++
++#include <support/test-driver.c>
+
+From 55ad82e45c313454de657931898e974a7a036cad Mon Sep 17 00:00:00 2001
+From: Andrew Senkevich <andrew.n.senkevich@gmail.com>
+Date: Fri, 23 Mar 2018 16:19:45 +0100
+Subject: [PATCH] Fix i386 memmove issue (bug 22644).
+
+ [BZ #22644]
+ * sysdeps/i386/i686/multiarch/memcpy-sse2-unaligned.S: Fixed
+ branch conditions.
+ * string/test-memmove.c (do_test2): New testcase.
+
+(cherry picked from commit cd66c0e584c6d692bc8347b5e72723d02b8a8ada)
+
+diff --git a/string/test-memmove.c b/string/test-memmove.c
+index edc7a4c3bf..64e3651ba4 100644
+--- a/string/test-memmove.c
++++ b/string/test-memmove.c
+@@ -24,6 +24,7 @@
+ # define TEST_NAME "memmove"
+ #endif
+ #include "test-string.h"
++#include <support/test-driver.h>
+
+ char *simple_memmove (char *, const char *, size_t);
+
+@@ -245,6 +246,60 @@ do_random_tests (void)
+ }
+ }
+
++static void
++do_test2 (void)
++{
++ size_t size = 0x20000000;
++ uint32_t * large_buf;
++
++ large_buf = mmap ((void*) 0x70000000, size, PROT_READ | PROT_WRITE,
++ MAP_PRIVATE | MAP_ANON, -1, 0);
++
++ if (large_buf == MAP_FAILED)
++ error (EXIT_UNSUPPORTED, errno, "Large mmap failed");
++
++ if ((uintptr_t) large_buf > 0x80000000 - 128
++ || 0x80000000 - (uintptr_t) large_buf > 0x20000000)
++ {
++ error (0, 0, "Large mmap allocated improperly");
++ ret = EXIT_UNSUPPORTED;
++ munmap ((void *) large_buf, size);
++ return;
++ }
++
++ size_t bytes_move = 0x80000000 - (uintptr_t) large_buf;
++ size_t arr_size = bytes_move / sizeof (uint32_t);
++ size_t i;
++
++ FOR_EACH_IMPL (impl, 0)
++ {
++ for (i = 0; i < arr_size; i++)
++ large_buf[i] = (uint32_t) i;
++
++ uint32_t * dst = &large_buf[33];
++
++#ifdef TEST_BCOPY
++ CALL (impl, (char *) large_buf, (char *) dst, bytes_move);
++#else
++ CALL (impl, (char *) dst, (char *) large_buf, bytes_move);
++#endif
++
++ for (i = 0; i < arr_size; i++)
++ {
++ if (dst[i] != (uint32_t) i)
++ {
++ error (0, 0,
++ "Wrong result in function %s dst \"%p\" src \"%p\" offset \"%zd\"",
++ impl->name, dst, large_buf, i);
++ ret = 1;
++ break;
++ }
++ }
++ }
++
++ munmap ((void *) large_buf, size);
++}
++
+ int
+ test_main (void)
+ {
+@@ -284,6 +339,9 @@ test_main (void)
+ }
+
+ do_random_tests ();
++
++ do_test2 ();
++
+ return ret;
+ }
+
+diff --git a/sysdeps/i386/i686/multiarch/memcpy-sse2-unaligned.S b/sysdeps/i386/i686/multiarch/memcpy-sse2-unaligned.S
+index 9c3bbe7e17..9aa17de99c 100644
+--- a/sysdeps/i386/i686/multiarch/memcpy-sse2-unaligned.S
++++ b/sysdeps/i386/i686/multiarch/memcpy-sse2-unaligned.S
+@@ -72,7 +72,7 @@ ENTRY (MEMCPY)
+ cmp %edx, %eax
+
+ # ifdef USE_AS_MEMMOVE
+- jg L(check_forward)
++ ja L(check_forward)
+
+ L(mm_len_0_or_more_backward):
+ /* Now do checks for lengths. We do [0..16], [16..32], [32..64], [64..128]
+@@ -81,7 +81,7 @@ L(mm_len_0_or_more_backward):
+ jbe L(mm_len_0_16_bytes_backward)
+
+ cmpl $32, %ecx
+- jg L(mm_len_32_or_more_backward)
++ ja L(mm_len_32_or_more_backward)
+
+ /* Copy [0..32] and return. */
+ movdqu (%eax), %xmm0
+@@ -92,7 +92,7 @@ L(mm_len_0_or_more_backward):
+
+ L(mm_len_32_or_more_backward):
+ cmpl $64, %ecx
+- jg L(mm_len_64_or_more_backward)
++ ja L(mm_len_64_or_more_backward)
+
+ /* Copy [0..64] and return. */
+ movdqu (%eax), %xmm0
+@@ -107,7 +107,7 @@ L(mm_len_32_or_more_backward):
+
+ L(mm_len_64_or_more_backward):
+ cmpl $128, %ecx
+- jg L(mm_len_128_or_more_backward)
++ ja L(mm_len_128_or_more_backward)
+
+ /* Copy [0..128] and return. */
+ movdqu (%eax), %xmm0
+@@ -132,7 +132,7 @@ L(mm_len_128_or_more_backward):
+ add %ecx, %eax
+ cmp %edx, %eax
+ movl SRC(%esp), %eax
+- jle L(forward)
++ jbe L(forward)
+ PUSH (%esi)
+ PUSH (%edi)
+ PUSH (%ebx)
+@@ -269,7 +269,7 @@ L(check_forward):
+ add %edx, %ecx
+ cmp %eax, %ecx
+ movl LEN(%esp), %ecx
+- jle L(forward)
++ jbe L(forward)
+
+ /* Now do checks for lengths. We do [0..16], [0..32], [0..64], [0..128]
+ separately. */
diff --git a/gnu/packages/patches/glibc-bootstrap-system.patch b/gnu/packages/patches/glibc-bootstrap-system.patch
index 2f8e7da7e1..addeed6dbd 100644
--- a/gnu/packages/patches/glibc-bootstrap-system.patch
+++ b/gnu/packages/patches/glibc-bootstrap-system.patch
@@ -15,16 +15,16 @@ instead uses the hard-coded absolute file name of `bash'.
}
else if (pid < (pid_t) 0)
---- b/libio/iopopen.c 2012-06-30 21:12:34.000000000 +0200
-+++ b/libio/iopopen.c 2012-12-19 12:52:29.000000000 +0100
-@@ -226,7 +226,7 @@ _IO_new_proc_open (fp, command, mode)
- _IO_close (fd);
+--- a/libio/iopopen.c
++++ b/libio/iopopen.c
+@@ -145,7 +145,7 @@ _IO_new_proc_open (fp, command, mode)
+ __close_nocancel (fd);
}
-- _IO_execl ("/bin/sh", "sh", "-c", command, (char *) 0);
+- execl ("/bin/sh", "sh", "-c", command, (char *) 0);
+ execlp ("sh", "sh", "-c", command, (char *) 0);
- _IO__exit (127);
+ _exit (127);
}
- _IO_close (child_end);
+ __close_nocancel (child_end);
diff --git a/gnu/packages/patches/glibc-hidden-visibility-ldconfig.patch b/gnu/packages/patches/glibc-hidden-visibility-ldconfig.patch
new file mode 100644
index 0000000000..c796946d7e
--- /dev/null
+++ b/gnu/packages/patches/glibc-hidden-visibility-ldconfig.patch
@@ -0,0 +1,16 @@
+Fix a regression in glibc 2.27 when built without ldconfig. See
+<https://sourceware.org/bugzilla/show_bug.cgi?id=22977> for details.
+
+diff --git a/include/libc-symbols.h b/include/libc-symbols.h
+index 6137304b0b..7d630f36d8 100644
+--- a/include/libc-symbols.h
++++ b/include/libc-symbols.h
+@@ -508,7 +508,7 @@ for linking")
+ # ifndef __ASSEMBLER__
+ # if !defined SHARED && IS_IN (libc) && !defined LIBC_NONSHARED \
+ && (!defined PIC || !defined NO_HIDDEN_EXTERN_FUNC_IN_PIE) \
+- && !defined NO_HIDDEN
++ && !defined NO_HIDDEN && defined USE_LDCONFIG
+ # define __hidden_proto_hiddenattr(attrs...) \
+ __attribute__ ((visibility ("hidden"), ##attrs))
+ # define hidden_proto(name, attrs...) \
diff --git a/gnu/packages/patches/glibc-locales.patch b/gnu/packages/patches/glibc-locales.patch
index 3a125e845e..31ee6c1ff3 100644
--- a/gnu/packages/patches/glibc-locales.patch
+++ b/gnu/packages/patches/glibc-locales.patch
@@ -9,9 +9,9 @@ in a package separate from glibc.
place, and because otherwise, 'localedef' fails with:
"cannot write output files to `(null)'".
---- glibc-2.22/localedata/Makefile 1970-01-01 01:00:00.000000000 +0100
-+++ glibc-2.22/localedata/Makefile 2015-09-25 14:18:34.698941752 +0200
-@@ -195,7 +195,7 @@ INSTALL-SUPPORTED-LOCALES=$(addprefix in
+--- glibc-2.27/localedata/Makefile
++++ glibc-2.27/localedata/Makefile
+@@ -199,7 +199,7 @@ INSTALL-SUPPORTED-LOCALES=$(addprefix install-, $(SUPPORTED-LOCALES))
# Sometimes the whole collection of locale files should be installed.
LOCALEDEF=I18NPATH=. GCONV_PATH=$(common-objpfx)iconvdata LC_ALL=C \
@@ -20,10 +20,10 @@ in a package separate from glibc.
install-locales: $(INSTALL-SUPPORTED-LOCALES)
install-locales-dir:
-@@ -212,7 +212,7 @@ $(INSTALL-SUPPORTED-LOCALES): install-lo
+@@ -224,7 +224,7 @@ $(INSTALL-SUPPORTED-LOCALES): install-locales-dir
input=`echo $$locale | sed 's/\([^.]*\)[^@]*\(.*\)/\1\2/'`; \
- $(LOCALEDEF) --alias-file=../intl/locale.alias \
- -i locales/$$input -c -f charmaps/$$charset \
+ $(LOCALEDEF) $$flags --alias-file=../intl/locale.alias \
+ -i locales/$$input -f charmaps/$$charset \
- $(addprefix --prefix=,$(install_root)) $$locale \
+ $(addprefix --prefix=,$(install_root)) $(inst_complocaledir)/$$locale \
&& echo ' done'; \
diff --git a/gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch b/gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch
new file mode 100644
index 0000000000..ccc153c12a
--- /dev/null
+++ b/gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch
@@ -0,0 +1,127 @@
+This patch reinstates fallback code when the 'prlimit64' system call is
+missing by reverting the relevant part of this upstream commit:
+
+ commit 695d7d138eda449678a1650a8b8b58181033353f
+ Author: Joseph Myers <joseph@codesourcery.com>
+ Date: Tue May 9 14:05:09 2017 +0000
+
+ Assume prlimit64 is available.
+
+The fallback code is useful on systems that lack 'prlimit64', such as the
+2.6.32-on-steroid kernel found on RHEL 6:
+
+ <https://lists.gnu.org/archive/html/guix-devel/2018-03/msg00349.html>
+
+diff --git a/sysdeps/unix/sysv/linux/getrlimit64.c b/sysdeps/unix/sysv/linux/getrlimit64.c
+index 37c173286f..56af3c0646 100644
+--- b/sysdeps/unix/sysv/linux/getrlimit64.c
++++ a/sysdeps/unix/sysv/linux/getrlimit64.c
+@@ -35,7 +35,40 @@
+ int
+ __getrlimit64 (enum __rlimit_resource resource, struct rlimit64 *rlimits)
+ {
+- return INLINE_SYSCALL_CALL (prlimit64, 0, resource, NULL, rlimits);
++#ifdef __NR_prlimit64
++ int res = INLINE_SYSCALL_CALL (prlimit64, 0, resource, NULL, rlimits);
++ if (res == 0 || errno != ENOSYS)
++ return res;
++#endif
++
++/* The fallback code only makes sense if the platform supports either
++ __NR_ugetrlimit and/or __NR_getrlimit. */
++#if defined (__NR_ugetrlimit) || defined (__NR_getrlimit)
++# ifndef __NR_ugetrlimit
++# define __NR_ugetrlimit __NR_getrlimit
++# endif
++# if __RLIM_T_MATCHES_RLIM64_T
++# define rlimits32 (*rlimits)
++# else
++ struct rlimit rlimits32;
++# endif
++
++ if (INLINE_SYSCALL_CALL (ugetrlimit, resource, &rlimits32) < 0)
++ return -1;
++
++# if !__RLIM_T_MATCHES_RLIM64_T
++ if (rlimits32.rlim_cur == RLIM_INFINITY)
++ rlimits->rlim_cur = RLIM64_INFINITY;
++ else
++ rlimits->rlim_cur = rlimits32.rlim_cur;
++ if (rlimits32.rlim_max == RLIM_INFINITY)
++ rlimits->rlim_max = RLIM64_INFINITY;
++ else
++ rlimits->rlim_max = rlimits32.rlim_max;
++# endif /* !__RLIM_T_MATCHES_RLIM64_T */
++#endif /* defined (__NR_ugetrlimit) || defined (__NR_getrlimit) */
++
++ return 0;
+ }
+ libc_hidden_def (__getrlimit64)
+
+diff --git a/sysdeps/unix/sysv/linux/setrlimit.c b/sysdeps/unix/sysv/linux/setrlimit.c
+index 01812ac355..8773c78236 100644
+--- b/sysdeps/unix/sysv/linux/setrlimit.c
++++ a/sysdeps/unix/sysv/linux/setrlimit.c
+@@ -34,6 +34,7 @@
+ int
+ __setrlimit (enum __rlimit_resource resource, const struct rlimit *rlim)
+ {
++# ifdef __NR_prlimit64
+ struct rlimit64 rlim64;
+
+ if (rlim->rlim_cur == RLIM_INFINITY)
+@@ -45,7 +46,11 @@
+ else
+ rlim64.rlim_max = rlim->rlim_max;
+
+- return INLINE_SYSCALL_CALL (prlimit64, 0, resource, &rlim64, NULL);
++ int res = INLINE_SYSCALL_CALL (prlimit64, 0, resource, &rlim64, NULL);
++ if (res == 0 || errno != ENOSYS)
++ return res;
++# endif
++ return INLINE_SYSCALL_CALL (setrlimit, resource, rlim);
+ }
+
+ # if SHLIB_COMPAT (libc, GLIBC_2_0, GLIBC_2_2)
+diff --git a/sysdeps/unix/sysv/linux/setrlimit64.c b/sysdeps/unix/sysv/linux/setrlimit64.c
+index 2dd129d99e..db1960fc18 100644
+--- b/sysdeps/unix/sysv/linux/setrlimit64.c
++++ a/sysdeps/unix/sysv/linux/setrlimit64.c
+@@ -36,7 +36,36 @@
+ int
+ __setrlimit64 (enum __rlimit_resource resource, const struct rlimit64 *rlimits)
+ {
+- return INLINE_SYSCALL_CALL (prlimit64, 0, resource, rlimits, NULL);
++ int res;
++
++#ifdef __NR_prlimit64
++ res = INLINE_SYSCALL_CALL (prlimit64, 0, resource, rlimits, NULL);
++ if (res == 0 || errno != ENOSYS)
++ return res;
++#endif
++
++/* The fallback code only makes sense if the platform supports
++ __NR_setrlimit. */
++#ifdef __NR_setrlimit
++# if !__RLIM_T_MATCHES_RLIM64_T
++ struct rlimit rlimits32;
++
++ if (rlimits->rlim_cur >= RLIM_INFINITY)
++ rlimits32.rlim_cur = RLIM_INFINITY;
++ else
++ rlimits32.rlim_cur = rlimits->rlim_cur;
++ if (rlimits->rlim_max >= RLIM_INFINITY)
++ rlimits32.rlim_max = RLIM_INFINITY;
++ else
++ rlimits32.rlim_max = rlimits->rlim_max;
++# else
++# define rlimits32 (*rlimits)
++# endif
++
++ res = INLINE_SYSCALL_CALL (setrlimit, resource, &rlimits32);
++#endif
++
++ return res;
+ }
+ weak_alias (__setrlimit64, setrlimit64)
+
diff --git a/gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch b/gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch
new file mode 100644
index 0000000000..306d4d348b
--- /dev/null
+++ b/gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch
@@ -0,0 +1,50 @@
+Fix CVE-2018-12020:
+
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-12020
+https://lists.gnupg.org/pipermail/gnupg-announce/2018q2/000425.html
+
+Patch copied from upstream source repository:
+
+https://git.gnupg.org/cgi-bin/gitweb.cgi?p=gnupg.git;a=commit;h=2326851c60793653069494379b16d84e4c10a0ac
+
+From 2326851c60793653069494379b16d84e4c10a0ac Mon Sep 17 00:00:00 2001
+From: Werner Koch <wk@gnupg.org>
+Date: Fri, 8 Jun 2018 10:45:21 +0200
+Subject: [PATCH] gpg: Sanitize diagnostic with the original file name.
+
+* g10/mainproc.c (proc_plaintext): Sanitize verbose output.
+--
+
+This fixes a forgotten sanitation of user supplied data in a verbose
+mode diagnostic. The mention CVE is about using this to inject
+status-fd lines into the stderr output. Other harm good as well be
+done. Note that GPGME based applications are not affected because
+GPGME does not fold status output into stderr.
+
+CVE-id: CVE-2018-12020
+GnuPG-bug-id: 4012
+(cherry picked from commit 13f135c7a252cc46cff96e75968d92b6dc8dce1b)
+---
+ g10/mainproc.c | 6 +++++-
+ 1 file changed, 5 insertions(+), 1 deletion(-)
+
+diff --git a/g10/mainproc.c b/g10/mainproc.c
+index 33a654b34..ffa7ef6d8 100644
+--- a/g10/mainproc.c
++++ b/g10/mainproc.c
+@@ -638,7 +638,11 @@ proc_plaintext( CTX c, PACKET *pkt )
+ if( pt->namelen == 8 && !memcmp( pt->name, "_CONSOLE", 8 ) )
+ log_info(_("NOTE: sender requested \"for-your-eyes-only\"\n"));
+ else if( opt.verbose )
+- log_info(_("original file name='%.*s'\n"), pt->namelen, pt->name);
++ {
++ char *tmp = make_printable_string (pt->name, pt->namelen, 0);
++ log_info (_("original file name='%.*s'\n"), (int)strlen (tmp), tmp);
++ xfree (tmp);
++ }
+ free_md_filter_context( &c->mfx );
+ c->mfx.md = md_open( 0, 0);
+ /* fixme: we may need to push the textfilter if we have sigclass 1
+--
+2.17.1
+
diff --git a/gnu/packages/patches/graphite2-ffloat-store.patch b/gnu/packages/patches/graphite2-ffloat-store.patch
deleted file mode 100644
index f6ee56973e..0000000000
--- a/gnu/packages/patches/graphite2-ffloat-store.patch
+++ /dev/null
@@ -1,34 +0,0 @@
-Fix test failures of awamicmp1 and awamicmp2.
-
-Debian bug report:
-
-https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=855814
-
-Patch adapted from upstream source repository:
-
-https://github.com/silnrsi/graphite/commit/f7bbdd87d510d587c872e314d6458160c0069c65
-
-From f7bbdd87d510d587c872e314d6458160c0069c65 Mon Sep 17 00:00:00 2001
-From: Martin Hosken <martin_hosken@sil.org>
-Date: Tue, 14 Feb 2017 17:00:03 +0000
-Subject: [PATCH] try -ffloat-store for fp stability. Remove nested const to
- work around VS bug
-
----
- src/CMakeLists.txt | 2 +-
- src/inc/locale2lcid.h | 4 ++--
- 2 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
-index 4f1e7e5..5b61b5c 100644
---- a/src/CMakeLists.txt
-+++ b/src/CMakeLists.txt
-@@ -108,7 +108,7 @@ set_target_properties(graphite2 PROPERTIES PUBLIC_HEADER "${GRAPHITE_HEADERS}"
-
- if (${CMAKE_SYSTEM_NAME} STREQUAL "Linux")
- set_target_properties(graphite2 PROPERTIES
-- COMPILE_FLAGS "-Wall -Wextra -Wno-unknown-pragmas -Wendif-labels -Wshadow -Wctor-dtor-privacy -Wnon-virtual-dtor -fno-rtti -fno-exceptions -fvisibility=hidden -fvisibility-inlines-hidden -fno-stack-protector"
-+ COMPILE_FLAGS "-Wall -Wextra -Wno-unknown-pragmas -Wendif-labels -Wshadow -Wctor-dtor-privacy -Wnon-virtual-dtor -fno-rtti -fno-exceptions -fvisibility=hidden -fvisibility-inlines-hidden -fno-stack-protector -ffloat-store"
- LINK_FLAGS "-nodefaultlibs ${GRAPHITE_LINK_FLAGS}"
- LINKER_LANGUAGE C)
- if (CMAKE_COMPILER_IS_GNUCXX)
diff --git a/gnu/packages/patches/groovy-add-exceptionutilsgenerator.patch b/gnu/packages/patches/groovy-add-exceptionutilsgenerator.patch
new file mode 100644
index 0000000000..df74bdbaba
--- /dev/null
+++ b/gnu/packages/patches/groovy-add-exceptionutilsgenerator.patch
@@ -0,0 +1,98 @@
+From 3dbdc68093e90f0ef9b77b70490d8e0b1dcfbf8f Mon Sep 17 00:00:00 2001
+From: Julien Lepiller <julien@lepiller.eu>
+Date: Sun, 17 Sep 2017 21:08:45 +0200
+Subject: [PATCH] Add ExceptionUtilsGenerator.java.
+
+A gradle task (in gradle/utils.gradle) is normally used to generate an
+ExceptionUtils class. Since gradle depends on groovy, we cannot use it, so
+we copy the code from the gradle task to a new file. Running this file then
+generates the required class.
+---
+ .../codehaus/groovy/ExceptionUtilsGenerator.java | 75 ++++++++++++++++++++++
+ 1 file changed, 75 insertions(+)
+ create mode 100644 config/ant/src/org/codehaus/groovy/ExceptionUtilsGenerator.java
+
+diff --git a/config/ant/src/org/codehaus/groovy/ExceptionUtilsGenerator.java b/config/ant/src/org/codehaus/groovy/ExceptionUtilsGenerator.java
+new file mode 100644
+index 0000000..41f006d
+--- /dev/null
++++ b/config/ant/src/org/codehaus/groovy/ExceptionUtilsGenerator.java
+@@ -0,0 +1,75 @@
++package org.codehaus.groovy;
++
++import org.objectweb.asm.*;
++
++import java.io.BufferedOutputStream;
++import java.io.File;
++import java.io.FileOutputStream;
++import java.io.IOException;
++import java.util.logging.Logger;
++
++public class ExceptionUtilsGenerator implements Opcodes {
++ private final static Logger LOGGER = Logger.getLogger(ExceptionUtilsGenerator.class.getName());
++
++ public static void main(String... args) {
++ if (args==null || args.length==0) {
++ throw new IllegalArgumentException("You must specify at least one file");
++ }
++
++ ClassWriter cw = new ClassWriter(0);
++ MethodVisitor mv;
++
++ cw.visit(V1_5, ACC_PUBLIC + ACC_SUPER, "org/codehaus/groovy/runtime/ExceptionUtils", null, "java/lang/Object", null);
++
++ cw.visitSource("ExceptionUtils.java", null);
++
++ mv = cw.visitMethod(ACC_PUBLIC, "<init>", "()V", null, null);
++ mv.visitCode();
++ Label l0 = new Label();
++ mv.visitLabel(l0);
++ mv.visitLineNumber(18, l0);
++ mv.visitVarInsn(ALOAD, 0);
++ mv.visitMethodInsn(INVOKESPECIAL, "java/lang/Object", "<init>", "()V");
++ mv.visitInsn(RETURN);
++ Label l1 = new Label();
++ mv.visitLabel(l1);
++ mv.visitLocalVariable("this", "Lorg/codehaus/groovy/runtime/ExceptionUtils;", null, l0, l1, 0);
++ mv.visitMaxs(1, 1);
++ mv.visitEnd();
++
++ mv = cw.visitMethod(ACC_PUBLIC + ACC_STATIC, "sneakyThrow", "(Ljava/lang/Throwable;)V", null, null);
++ mv.visitCode();
++ Label l2 = new Label();
++ mv.visitLabel(l2);
++ mv.visitLineNumber(20, l2);
++ mv.visitVarInsn(ALOAD, 0);
++ mv.visitInsn(ATHROW);
++ Label l3 = new Label();
++ mv.visitLabel(l3);
++ mv.visitLocalVariable("e", "Ljava/lang/Throwable;", null, l2, l3, 0);
++ mv.visitMaxs(1, 1);
++ mv.visitEnd();
++
++ cw.visitEnd();
++
++ LOGGER.info("Generating ExceptionUtils");
++ byte[] bytes = cw.toByteArray();
++ for (String classFilePath : args) {
++ File classFile = new File(classFilePath);
++ if (classFile.getParentFile().exists() || classFile.getParentFile().mkdirs()) {
++ try {
++ if (classFile.exists()) {
++ classFile.delete();
++ }
++ BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(classFile));
++ bos.write(bytes);
++ bos.close();
++ } catch (IOException e) {
++ LOGGER.warning("Unable to write file "+classFile);
++ }
++ } else {
++ LOGGER.warning("Unable to create directory "+classFile.getParentFile());
++ }
++ }
++ }
++}
+--
+2.14.1
+
diff --git a/gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch b/gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch
new file mode 100644
index 0000000000..e6b578bdb7
--- /dev/null
+++ b/gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch
@@ -0,0 +1,53 @@
+From 1da99396dc65993ba34ac0370ca5d6acda6a3322 Mon Sep 17 00:00:00 2001
+From: Mark H Weaver <mhw@netris.org>
+Date: Sun, 18 Mar 2018 07:02:37 -0400
+Subject: [PATCH] Add support for gdbm-1.14.
+
+As of gdbm-1.14, 'gdbm_errno' no longer exists as a binary interface.
+It has been replaced by 'gdbm_errno_location', a function that returns
+int*. We now use this new interface if it's available.
+---
+ gdbm.scm | 18 ++++++++++++++++--
+ 1 file changed, 16 insertions(+), 2 deletions(-)
+
+diff --git a/gdbm.scm b/gdbm.scm
+index b92992f..4d38cc3 100644
+--- a/gdbm.scm
++++ b/gdbm.scm
+@@ -17,6 +17,9 @@
+ ;; You should have received a copy of the GNU General Public License
+ ;; along with this program. If not, see <http://www.gnu.org/licenses/>.
+
++;; Modified by Mark H Weaver <mhw@netris.org> in March 2018 to support
++;; gdbm-1.14 with its new 'gdbm_errno_location' interface.
++
+ (define-module (gdbm)
+ #:use-module (system foreign)
+ #:use-module (rnrs bytevectors)
+@@ -151,10 +154,21 @@
+
+ ;;; errors
+
+-(define %errno (dynamic-pointer "gdbm_errno" libgdbm))
++(define %list-int
++ (list int))
++
++(define (dereference-int ptr)
++ (apply (lambda (errno) errno)
++ (parse-c-struct ptr %list-int)))
++
++(define %errno-location
++ (or (false-if-exception
++ (let ((func (dynamic-func "gdbm_errno_location" libgdbm)))
++ (pointer->procedure '* func '())))
++ (const (dynamic-pointer "gdbm_errno" libgdbm))))
+
+ (define (gdbm-errno)
+- (pointer-address (dereference-pointer %errno)))
++ (dereference-int (%errno-location)))
+
+ (define (gdbm-error)
+ (error (pointer->string (%gdbm-strerror (gdbm-errno)))))
+--
+2.16.2
+
diff --git a/gnu/packages/patches/heimdal-CVE-2017-11103.patch b/gnu/packages/patches/heimdal-CVE-2017-11103.patch
deleted file mode 100644
index d76f0df369..0000000000
--- a/gnu/packages/patches/heimdal-CVE-2017-11103.patch
+++ /dev/null
@@ -1,45 +0,0 @@
-Fix CVE-2017-11103:
-
-https://orpheus-lyre.info/
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-11103
-https://security-tracker.debian.org/tracker/CVE-2017-11103
-
-Patch lifted from upstream source repository:
-
-https://github.com/heimdal/heimdal/commit/6dd3eb836bbb80a00ffced4ad57077a1cdf227ea
-
-From 6dd3eb836bbb80a00ffced4ad57077a1cdf227ea Mon Sep 17 00:00:00 2001
-From: Jeffrey Altman <jaltman@secure-endpoints.com>
-Date: Wed, 12 Apr 2017 15:40:42 -0400
-Subject: [PATCH] CVE-2017-11103: Orpheus' Lyre KDC-REP service name validation
-
-In _krb5_extract_ticket() the KDC-REP service name must be obtained from
-encrypted version stored in 'enc_part' instead of the unencrypted version
-stored in 'ticket'. Use of the unecrypted version provides an
-opportunity for successful server impersonation and other attacks.
-
-Identified by Jeffrey Altman, Viktor Duchovni and Nico Williams.
-
-Change-Id: I45ef61e8a46e0f6588d64b5bd572a24c7432547c
----
- lib/krb5/ticket.c | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/lib/krb5/ticket.c b/lib/krb5/ticket.c
-index d95d96d1b..b8d81c6ad 100644
---- a/lib/krb5/ticket.c
-+++ b/lib/krb5/ticket.c
-@@ -705,8 +705,8 @@ _krb5_extract_ticket(krb5_context context,
- /* check server referral and save principal */
- ret = _krb5_principalname2krb5_principal (context,
- &tmp_principal,
-- rep->kdc_rep.ticket.sname,
-- rep->kdc_rep.ticket.realm);
-+ rep->enc_part.sname,
-+ rep->enc_part.srealm);
- if (ret)
- goto out;
- if((flags & EXTRACT_TICKET_ALLOW_SERVER_MISMATCH) == 0){
---
-2.13.3
-
diff --git a/gnu/packages/patches/heimdal-CVE-2017-6594.patch b/gnu/packages/patches/heimdal-CVE-2017-6594.patch
deleted file mode 100644
index 714af60304..0000000000
--- a/gnu/packages/patches/heimdal-CVE-2017-6594.patch
+++ /dev/null
@@ -1,85 +0,0 @@
-Fix CVE-2017-6594:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-6594
-https://security-tracker.debian.org/tracker/CVE-2017-6594
-
-Patch lifted from upstream source repository:
-
-https://github.com/heimdal/heimdal/commit/b1e699103f08d6a0ca46a122193c9da65f6cf837
-
-To apply the patch to Heimdal 1.5.3 release tarball, the changes to 'NEWS' and
-files in 'tests/' are removed, and hunk #4 of 'kdc/krb5tgs.c' is modified.
-
-From b1e699103f08d6a0ca46a122193c9da65f6cf837 Mon Sep 17 00:00:00 2001
-From: Viktor Dukhovni <viktor@twosigma.com>
-Date: Wed, 10 Aug 2016 23:31:14 +0000
-Subject: [PATCH] Fix transit path validation CVE-2017-6594
-
-Commit f469fc6 (2010-10-02) inadvertently caused the previous hop realm
-to not be added to the transit path of issued tickets. This may, in
-some cases, enable bypass of capath policy in Heimdal versions 1.5
-through 7.2.
-
-Note, this may break sites that rely on the bug. With the bug some
-incomplete [capaths] worked, that should not have. These may now break
-authentication in some cross-realm configurations.
----
- NEWS | 14 ++++++++++++++
- kdc/krb5tgs.c | 12 ++++++++++--
- tests/kdc/check-kdc.in | 17 +++++++++++++++++
- tests/kdc/krb5.conf.in | 4 ++++
- 4 files changed, 45 insertions(+), 2 deletions(-)
-
-diff --git a/kdc/krb5tgs.c b/kdc/krb5tgs.c
-index 6048b9c55..98503812f 100644
---- a/kdc/krb5tgs.c
-+++ b/kdc/krb5tgs.c
-@@ -655,8 +655,12 @@ fix_transited_encoding(krb5_context context,
- "Decoding transited encoding");
- return ret;
- }
-+
-+ /*
-+ * If the realm of the presented tgt is neither the client nor the server
-+ * realm, it is a transit realm and must be added to transited set.
-+ */
- if(strcmp(client_realm, tgt_realm) && strcmp(server_realm, tgt_realm)) {
-- /* not us, so add the previous realm to transited set */
- if (num_realms + 1 > UINT_MAX/sizeof(*realms)) {
- ret = ERANGE;
- goto free_realms;
-@@ -737,6 +741,7 @@ tgs_make_reply(krb5_context context,
- const char *server_name,
- hdb_entry_ex *client,
- krb5_principal client_principal,
-+ const char *tgt_realm,
- hdb_entry_ex *krbtgt,
- krb5_enctype krbtgt_etype,
- krb5_principals spp,
-@@ -798,7 +803,7 @@ tgs_make_reply(krb5_context context,
- &tgt->transited, &et,
- krb5_principal_get_realm(context, client_principal),
- krb5_principal_get_realm(context, server->entry.principal),
-- krb5_principal_get_realm(context, krbtgt->entry.principal));
-+ tgt_realm);
- if(ret)
- goto out;
-
-@@ -1519,4 +1524,6 @@ tgs_build_reply(krb5_context context,
- krb5_keyblock sessionkey;
- krb5_kvno kvno;
- krb5_data rspac;
-+ const char *tgt_realm = /* Realm of TGT issuer */
-+ krb5_principal_get_realm(context, krbtgt->entry.principal);
-
-@@ -2324,6 +2331,7 @@ server_lookup:
- spn,
- client,
- cp,
-+ tgt_realm,
- krbtgt_out,
- tkey_sign->key.keytype,
- spp,
---
-2.13.3
-
diff --git a/gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch b/gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch
new file mode 100644
index 0000000000..b776640133
--- /dev/null
+++ b/gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch
@@ -0,0 +1,441 @@
+Based on <https://hg.mozilla.org/releases/mozilla-esr52/rev/608e76ec5ba2>
+Adapted to apply cleanly to GNU IceCat.
+
+# HG changeset patch
+# User Ryan VanderMeulen <ryanvm@gmail.com>
+# Date 1523630807 14400
+# Node ID 608e76ec5ba25cec2271d2b400c7bce2d4c5ef79
+# Parent 10b7f43b536f93151201d44d304c991aa9af5d0c
+Bug 1452075 - Backport some upstream pdf.js fixes to ESR52. r=bdahl, r=yury, a=RyanVM
+
+diff --git a/browser/extensions/pdfjs/content/PdfStreamConverter.jsm b/browser/extensions/pdfjs/content/PdfStreamConverter.jsm
+--- a/browser/extensions/pdfjs/content/PdfStreamConverter.jsm
++++ b/browser/extensions/pdfjs/content/PdfStreamConverter.jsm
+@@ -24,17 +24,18 @@ const Cc = Components.classes;
+ const Ci = Components.interfaces;
+ const Cr = Components.results;
+ const Cu = Components.utils;
+ // True only if this is the version of pdf.js that is included with icecat.
+ const MOZ_CENTRAL = JSON.parse('true');
+ const PDFJS_EVENT_ID = 'pdf.js.message';
+ const PDF_CONTENT_TYPE = 'application/pdf';
+ const PREF_PREFIX = 'pdfjs';
+-const PDF_VIEWER_WEB_PAGE = 'resource://pdf.js/web/viewer.html';
++const PDF_VIEWER_ORIGIN = "resource://pdf.js";
++const PDF_VIEWER_WEB_PAGE = "resource://pdf.js/web/viewer.html";
+ const MAX_NUMBER_OF_PREFS = 50;
+ const MAX_STRING_PREF_LENGTH = 128;
+
+ Cu.import('resource://gre/modules/XPCOMUtils.jsm');
+ Cu.import('resource://gre/modules/Services.jsm');
+ Cu.import('resource://gre/modules/NetUtil.jsm');
+
+ XPCOMUtils.defineLazyModuleGetter(this, 'NetworkManager',
+@@ -105,21 +106,25 @@ function log(aMsg) {
+ if (!getBoolPref(PREF_PREFIX + '.pdfBugEnabled', false)) {
+ return;
+ }
+ var msg = 'PdfStreamConverter.js: ' + (aMsg.join ? aMsg.join('') : aMsg);
+ Services.console.logStringMessage(msg);
+ dump(msg + '\n');
+ }
+
+-function getDOMWindow(aChannel) {
++function getDOMWindow(aChannel, aPrincipal) {
+ var requestor = aChannel.notificationCallbacks ?
+ aChannel.notificationCallbacks :
+ aChannel.loadGroup.notificationCallbacks;
+ var win = requestor.getInterface(Components.interfaces.nsIDOMWindow);
++ // Ensure the window wasn't navigated to something that is not PDF.js.
++ if (!win.document.nodePrincipal.equals(aPrincipal)) {
++ return null;
++ }
+ return win;
+ }
+
+ function getLocalizedStrings(path) {
+ var stringBundle = Cc['@mozilla.org/intl/stringbundle;1'].
+ getService(Ci.nsIStringBundleService).
+ createBundle('chrome://pdf.js/locale/' + path);
+
+@@ -627,31 +632,31 @@ var RangedChromeActions = (function Rang
+ data = this.dataListener.readData();
+
+ this.dataListener.onprogress = function (loaded, total) {
+ self.domWindow.postMessage({
+ pdfjsLoadAction: 'progressiveRead',
+ loaded: loaded,
+ total: total,
+ chunk: self.dataListener.readData()
+- }, '*');
++ }, PDF_VIEWER_ORIGIN);
+ };
+ this.dataListener.oncomplete = function () {
+ self.dataListener = null;
+ };
+ }
+
+ this.domWindow.postMessage({
+ pdfjsLoadAction: 'supportsRangedLoading',
+ rangeEnabled: this.rangeEnabled,
+ streamingEnabled: this.streamingEnabled,
+ pdfUrl: this.pdfUrl,
+ length: this.contentLength,
+ data: data
+- }, '*');
++ }, PDF_VIEWER_ORIGIN);
+
+ return true;
+ };
+
+ proto.requestDataRange = function RangedChromeActions_requestDataRange(args) {
+ if (!this.rangeEnabled) {
+ return;
+ }
+@@ -663,23 +668,23 @@ var RangedChromeActions = (function Rang
+ // errors from chrome code for non-range requests, so this doesn't
+ // seem high-pri
+ this.networkManager.requestRange(begin, end, {
+ onDone: function RangedChromeActions_onDone(args) {
+ domWindow.postMessage({
+ pdfjsLoadAction: 'range',
+ begin: args.begin,
+ chunk: args.chunk
+- }, '*');
++ }, PDF_VIEWER_ORIGIN);
+ },
+ onProgress: function RangedChromeActions_onProgress(evt) {
+ domWindow.postMessage({
+ pdfjsLoadAction: 'rangeProgress',
+ loaded: evt.loaded,
+- }, '*');
++ }, PDF_VIEWER_ORIGIN);
+ }
+ });
+ };
+
+ proto.abortLoading = function RangedChromeActions_abortLoading() {
+ this.networkManager.abortAllRequests();
+ if (this.originalRequest) {
+ this.originalRequest.cancel(Cr.NS_BINDING_ABORTED);
+@@ -718,26 +723,26 @@ var StandardChromeActions = (function St
+ var self = this;
+
+ this.dataListener.onprogress = function ChromeActions_dataListenerProgress(
+ loaded, total) {
+ self.domWindow.postMessage({
+ pdfjsLoadAction: 'progress',
+ loaded: loaded,
+ total: total
+- }, '*');
++ }, PDF_VIEWER_ORIGIN);
+ };
+
+ this.dataListener.oncomplete =
+ function StandardChromeActions_dataListenerComplete(data, errorCode) {
+ self.domWindow.postMessage({
+ pdfjsLoadAction: 'complete',
+ data: data,
+ errorCode: errorCode
+- }, '*');
++ }, PDF_VIEWER_ORIGIN);
+
+ self.dataListener = null;
+ self.originalRequest = null;
+ };
+
+ return true;
+ };
+
+@@ -972,31 +977,35 @@ PdfStreamConverter.prototype = {
+ var proxy = {
+ onStartRequest: function(request, context) {
+ listener.onStartRequest(aRequest, aContext);
+ },
+ onDataAvailable: function(request, context, inputStream, offset, count) {
+ listener.onDataAvailable(aRequest, aContext, inputStream,
+ offset, count);
+ },
+- onStopRequest: function(request, context, statusCode) {
+- // We get the DOM window here instead of before the request since it
+- // may have changed during a redirect.
+- var domWindow = getDOMWindow(channel);
++ onStopRequest(request, context, statusCode) {
++ var domWindow = getDOMWindow(channel, resourcePrincipal);
++ if (!Components.isSuccessCode(statusCode) || !domWindow) {
++ // The request may have been aborted and the document may have been
++ // replaced with something that is not PDF.js, abort attaching.
++ listener.onStopRequest(aRequest, context, statusCode);
++ return;
++ }
+ var actions;
+ if (rangeRequest || streamRequest) {
+ actions = new RangedChromeActions(
+ domWindow, contentDispositionFilename, aRequest,
+ rangeRequest, streamRequest, dataListener);
+ } else {
+ actions = new StandardChromeActions(
+ domWindow, contentDispositionFilename, aRequest, dataListener);
+ }
+ var requestListener = new RequestListener(actions);
+- domWindow.addEventListener(PDFJS_EVENT_ID, function(event) {
++ domWindow.document.addEventListener(PDFJS_EVENT_ID, function(event) {
+ requestListener.receive(event);
+ }, false, true);
+ if (actions.supportsIntegratedFind()) {
+ var findEventManager = new FindEventManager(domWindow);
+ findEventManager.bind();
+ }
+ listener.onStopRequest(aRequest, aContext, statusCode);
+
+diff --git a/browser/extensions/pdfjs/content/build/pdf.worker.js b/browser/extensions/pdfjs/content/build/pdf.worker.js
+--- a/browser/extensions/pdfjs/content/build/pdf.worker.js
++++ b/browser/extensions/pdfjs/content/build/pdf.worker.js
+@@ -41648,16 +41648,32 @@
+ var error = sharedUtil.error;
+ var info = sharedUtil.info;
+ var isArray = sharedUtil.isArray;
+ var isBool = sharedUtil.isBool;
+ var isDict = corePrimitives.isDict;
+ var isStream = corePrimitives.isStream;
+ var PostScriptLexer = corePsParser.PostScriptLexer;
+ var PostScriptParser = corePsParser.PostScriptParser;
++ function toNumberArray(arr) {
++ if (!Array.isArray(arr)) {
++ return null;
++ }
++ var length = arr.length;
++ for (var i = 0; i < length; i++) {
++ if (typeof arr[i] !== 'number') {
++ var result = new Array(length);
++ for (var j = 0; j < length; j++) {
++ result[j] = +arr[j];
++ }
++ return result;
++ }
++ }
++ return arr;
++ }
+ var PDFFunction = function PDFFunctionClosure() {
+ var CONSTRUCT_SAMPLED = 0;
+ var CONSTRUCT_INTERPOLATED = 2;
+ var CONSTRUCT_STICHED = 3;
+ var CONSTRUCT_POSTSCRIPT = 4;
+ return {
+ getSampleArray: function PDFFunction_getSampleArray(size, outputSize, bps, str) {
+ var i, ii;
+@@ -41747,43 +41763,43 @@
+ out[index] = [
+ arr[i],
+ arr[i + 1]
+ ];
+ ++index;
+ }
+ return out;
+ }
+- var domain = dict.getArray('Domain');
+- var range = dict.getArray('Range');
++ var domain = toNumberArray(dict.getArray('Domain'));
++ var range = toNumberArray(dict.getArray('Range'));
+ if (!domain || !range) {
+ error('No domain or range');
+ }
+ var inputSize = domain.length / 2;
+ var outputSize = range.length / 2;
+ domain = toMultiArray(domain);
+ range = toMultiArray(range);
+- var size = dict.get('Size');
++ var size = toNumberArray(dict.get('Size'));
+ var bps = dict.get('BitsPerSample');
+ var order = dict.get('Order') || 1;
+ if (order !== 1) {
+ // No description how cubic spline interpolation works in PDF32000:2008
+ // As in poppler, ignoring order, linear interpolation may work as good
+ info('No support for cubic spline interpolation: ' + order);
+ }
+- var encode = dict.getArray('Encode');
++ var encode = toNumberArray(dict.getArray('Encode'));
+ if (!encode) {
+ encode = [];
+ for (var i = 0; i < inputSize; ++i) {
+- encode.push(0);
+- encode.push(size[i] - 1);
+- }
+- }
+- encode = toMultiArray(encode);
+- var decode = dict.getArray('Decode');
++ encode.push([0, size[i] - 1]);
++ }
++ } else {
++ encode = toMultiArray(encode);
++ }
++ var decode = toNumberArray(dict.getArray('Decode'));
+ if (!decode) {
+ decode = range;
+ } else {
+ decode = toMultiArray(decode);
+ }
+ var samples = this.getSampleArray(size, outputSize, bps, str);
+ return [
+ CONSTRUCT_SAMPLED,
+@@ -41868,22 +41884,19 @@
+ // Decode_2j, Decode_2j+1)
+ rj = interpolate(rj, 0, 1, decode[j][0], decode[j][1]);
+ // y_j = min(max(r_j, range_2j), range_2j+1)
+ dest[destOffset + j] = Math.min(Math.max(rj, range[j][0]), range[j][1]);
+ }
+ };
+ },
+ constructInterpolated: function PDFFunction_constructInterpolated(str, dict) {
+- var c0 = dict.getArray('C0') || [0];
+- var c1 = dict.getArray('C1') || [1];
++ var c0 = toNumberArray(dict.getArray('C0')) || [0];
++ var c1 = toNumberArray(dict.getArray('C1')) || [1];
+ var n = dict.get('N');
+- if (!isArray(c0) || !isArray(c1)) {
+- error('Illegal dictionary for interpolated function');
+- }
+ var length = c0.length;
+ var diff = [];
+ for (var i = 0; i < length; ++i) {
+ diff.push(c1[i] - c0[i]);
+ }
+ return [
+ CONSTRUCT_INTERPOLATED,
+ c0,
+@@ -41899,49 +41912,45 @@
+ return function constructInterpolatedFromIRResult(src, srcOffset, dest, destOffset) {
+ var x = n === 1 ? src[srcOffset] : Math.pow(src[srcOffset], n);
+ for (var j = 0; j < length; ++j) {
+ dest[destOffset + j] = c0[j] + x * diff[j];
+ }
+ };
+ },
+ constructStiched: function PDFFunction_constructStiched(fn, dict, xref) {
+- var domain = dict.getArray('Domain');
++ var domain = toNumberArray(dict.getArray('Domain'));
+ if (!domain) {
+ error('No domain');
+ }
+ var inputSize = domain.length / 2;
+ if (inputSize !== 1) {
+ error('Bad domain for stiched function');
+ }
+ var fnRefs = dict.get('Functions');
+ var fns = [];
+ for (var i = 0, ii = fnRefs.length; i < ii; ++i) {
+- fns.push(PDFFunction.getIR(xref, xref.fetchIfRef(fnRefs[i])));
+- }
+- var bounds = dict.getArray('Bounds');
+- var encode = dict.getArray('Encode');
++ fns.push(PDFFunction.parse(xref, xref.fetchIfRef(fnRefs[i])));
++ }
++ var bounds = toNumberArray(dict.getArray('Bounds'));
++ var encode = toNumberArray(dict.getArray('Encode'));
+ return [
+ CONSTRUCT_STICHED,
+ domain,
+ bounds,
+ encode,
+ fns
+ ];
+ },
+ constructStichedFromIR: function PDFFunction_constructStichedFromIR(IR) {
+ var domain = IR[1];
+ var bounds = IR[2];
+ var encode = IR[3];
+- var fnsIR = IR[4];
+- var fns = [];
++ var fns = IR[4];
+ var tmpBuf = new Float32Array(1);
+- for (var i = 0, ii = fnsIR.length; i < ii; i++) {
+- fns.push(PDFFunction.fromIR(fnsIR[i]));
+- }
+ return function constructStichedFromIRResult(src, srcOffset, dest, destOffset) {
+ var clip = function constructStichedFromIRClip(v, min, max) {
+ if (v > max) {
+ v = max;
+ } else if (v < min) {
+ v = min;
+ }
+ return v;
+@@ -41968,18 +41977,18 @@
+ // Prevent the value from becoming NaN as a result
+ // of division by zero (fixes issue6113.pdf).
+ tmpBuf[0] = dmin === dmax ? rmin : rmin + (v - dmin) * (rmax - rmin) / (dmax - dmin);
+ // call the appropriate function
+ fns[i](tmpBuf, 0, dest, destOffset);
+ };
+ },
+ constructPostScript: function PDFFunction_constructPostScript(fn, dict, xref) {
+- var domain = dict.getArray('Domain');
+- var range = dict.getArray('Range');
++ var domain = toNumberArray(dict.getArray('Domain'));
++ var range = toNumberArray(dict.getArray('Range'));
+ if (!domain) {
+ error('No domain.');
+ }
+ if (!range) {
+ error('No range.');
+ }
+ var lexer = new PostScriptLexer(fn);
+ var parser = new PostScriptParser(lexer);
+@@ -42928,18 +42937,18 @@
+ case 'IndexedCS':
+ var baseIndexedCS = IR[1];
+ var hiVal = IR[2];
+ var lookup = IR[3];
+ return new IndexedCS(ColorSpace.fromIR(baseIndexedCS), hiVal, lookup);
+ case 'AlternateCS':
+ var numComps = IR[1];
+ var alt = IR[2];
+- var tintFnIR = IR[3];
+- return new AlternateCS(numComps, ColorSpace.fromIR(alt), PDFFunction.fromIR(tintFnIR));
++ var tintFn = IR[3];
++ return new AlternateCS(numComps, ColorSpace.fromIR(alt), tintFn);
+ case 'LabCS':
+ whitePoint = IR[1];
+ blackPoint = IR[2];
+ var range = IR[3];
+ return new LabCS(whitePoint, blackPoint, range);
+ default:
+ error('Unknown name ' + name);
+ }
+@@ -43067,22 +43076,22 @@
+ var name = xref.fetchIfRef(cs[1]);
+ numComps = 1;
+ if (isName(name)) {
+ numComps = 1;
+ } else if (isArray(name)) {
+ numComps = name.length;
+ }
+ alt = ColorSpace.parseToIR(cs[2], xref, res);
+- var tintFnIR = PDFFunction.getIR(xref, xref.fetchIfRef(cs[3]));
++ var tintFn = PDFFunction.parse(xref, xref.fetchIfRef(cs[3]));
+ return [
+ 'AlternateCS',
+ numComps,
+ alt,
+- tintFnIR
++ tintFn
+ ];
+ case 'Lab':
+ params = xref.fetchIfRef(cs[1]);
+ whitePoint = params.getArray('WhitePoint');
+ blackPoint = params.getArray('BlackPoint');
+ var range = params.getArray('Range');
+ return [
+ 'LabCS',
+@@ -52483,9 +52492,9 @@
+ initializeWorker();
+ }
+ exports.setPDFNetworkStreamClass = setPDFNetworkStreamClass;
+ exports.WorkerTask = WorkerTask;
+ exports.WorkerMessageHandler = WorkerMessageHandler;
+ }));
+ }.call(pdfjsLibs));
+ exports.WorkerMessageHandler = pdfjsLibs.pdfjsCoreWorker.WorkerMessageHandler;
+-}));
+\ No newline at end of file
++}));
+
diff --git a/gnu/packages/patches/lcms-CVE-2016-10165.patch b/gnu/packages/patches/lcms-CVE-2016-10165.patch
deleted file mode 100644
index fa4d75c9ee..0000000000
--- a/gnu/packages/patches/lcms-CVE-2016-10165.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-Fix CVE-2016-10165, an out-of-bounds heap read in Type_MLU_Read():
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-10165
-http://seclists.org/oss-sec/2016/q3/288
-https://bugzilla.redhat.com/show_bug.cgi?id=1367357
-https://security-tracker.debian.org/tracker/CVE-2016-10165
-
-Patch copied from upstream source repository:
-
-https://github.com/mm2/Little-CMS/commit/5ca71a7bc18b6897ab21d815d15e218e204581e2
-
-From 5ca71a7bc18b6897ab21d815d15e218e204581e2 Mon Sep 17 00:00:00 2001
-From: Marti <marti.maria@tktbrainpower.com>
-Date: Mon, 15 Aug 2016 23:31:39 +0200
-Subject: [PATCH] Added an extra check to MLU bounds
-
-Thanks to Ibrahim el-sayed for spotting the bug
----
- src/cmstypes.c | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/src/cmstypes.c b/src/cmstypes.c
-index cb61860..c7328b9 100644
---- a/src/cmstypes.c
-+++ b/src/cmstypes.c
-@@ -1460,6 +1460,7 @@ void *Type_MLU_Read(struct _cms_typehandler_struct* self, cmsIOHANDLER* io, cmsU
-
- // Check for overflow
- if (Offset < (SizeOfHeader + 8)) goto Error;
-+ if ((Offset + Len) > SizeOfTag + 8) goto Error;
-
- // True begin of the string
- BeginOfThisString = Offset - SizeOfHeader - 8;
---
-2.11.0
-
diff --git a/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch b/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch
new file mode 100644
index 0000000000..d848d639b2
--- /dev/null
+++ b/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch
@@ -0,0 +1,58 @@
+https://git.gnupg.org/cgi-bin/gitweb.cgi?p=libgpg-error.git;a=patch;h=791177de023574223eddf7288eb7c5a0721ac623
+
+From 791177de023574223eddf7288eb7c5a0721ac623 Mon Sep 17 00:00:00 2001
+From: Werner Koch <wk@gnupg.org>
+Date: Sun, 18 Mar 2018 17:39:43 +0100
+Subject: [PATCH] core: Fix regression on arm64 due to invalid use of va_list.
+
+* src/logging.c (_gpgrt_log_printhex): Provide a dummy arg instead of
+NULL.
+--
+
+Fix
+Suggested-by: Jakub Wilk <jwilk@jwilk.net>
+
+Signed-off-by: Werner Koch <wk@gnupg.org>
+---
+ src/logging.c | 18 ++++++++++++++----
+ 1 file changed, 14 insertions(+), 4 deletions(-)
+
+diff --git a/src/logging.c b/src/logging.c
+index 1a4f620..d01f974 100644
+--- a/src/logging.c
++++ b/src/logging.c
+@@ -1090,9 +1090,10 @@ _gpgrt_log_flush (void)
+
+
+ /* Print a hexdump of (BUFFER,LENGTH). With FMT passed as NULL print
+- * just the raw dump, with FMT being an empty string, print a trailing
+- * linefeed, otherwise print an entire debug line with the expanded
+- * FMT followed by a possible wrapped hexdump and a final LF. */
++ * just the raw dump (in this case ARG_PTR is not used), with FMT
++ * being an empty string, print a trailing linefeed, otherwise print
++ * an entire debug line with the expanded FMT followed by a possible
++ * wrapped hexdump and a final LF. */
+ void
+ _gpgrt_logv_printhex (const void *buffer, size_t length,
+ const char *fmt, va_list arg_ptr)
+@@ -1150,7 +1151,16 @@ _gpgrt_log_printhex (const void *buffer, size_t length,
+ va_end (arg_ptr);
+ }
+ else
+- _gpgrt_logv_printhex (buffer, length, NULL, NULL);
++ {
++ /* va_list is not necessary a pointer and thus we can't use NULL
++ * because that would conflict with platforms using a straight
++ * struct for it (e.g. arm64). We use a dummy variable instead;
++ * the static is a simple way zero it out so to not get
++ * complains about uninitialized use. */
++ static va_list dummy_argptr;
++
++ _gpgrt_logv_printhex (buffer, length, NULL, dummy_argptr);
++ }
+ }
+
+
+--
+2.8.0.rc3
+
diff --git a/gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch b/gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch
new file mode 100644
index 0000000000..69673c90ee
--- /dev/null
+++ b/gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch
@@ -0,0 +1,78 @@
+From 1b53767b988b339aac8b353327a1542b2a0c0610 Mon Sep 17 00:00:00 2001
+From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com>
+Date: Sun, 15 Apr 2018 22:29:33 +0200
+Subject: [PATCH] Fix build with Qt 5.11_beta3 (dropping qt5_use_modules)
+
+---
+ CMakeLists.txt | 3 ---
+ src/CMakeLists.txt | 8 ++++++--
+ tests/CMakeLists.txt | 12 +++++++++---
+ 3 files changed, 15 insertions(+), 8 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index eb006d9..fa4b0cb 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -34,9 +34,6 @@ else()
+ set( QT_DONT_USE_QTGUI TRUE )
+ include( ${QT_USE_FILE} )
+
+- macro(qt5_use_modules)
+- endmacro()
+-
+ macro(qt_wrap_cpp)
+ qt4_wrap_cpp(${ARGN})
+ endmacro()
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 802125b..253e81e 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -79,9 +79,13 @@ QT_WRAP_CPP(LIBMYGPO_QT_MOC_SRC ${LIBMYGPO_QT_MOC_H} )
+
+ add_library( ${MYGPO_QT_TARGET_NAME} SHARED ${LIBMYGPO_QT_SRC} ${LIBMYGPO_QT_MOC_SRC} )
+
+-target_link_libraries( ${MYGPO_QT_TARGET_NAME} ${QJSON_LIBRARIES} ${QT_QTCORE_LIBRARY} ${QT_QTNETWORK_LIBRARY} )
+ set_target_properties( ${MYGPO_QT_TARGET_NAME} PROPERTIES VERSION ${MYGPO_QT_VERSION} SOVERSION ${MYGPO_QT_SONAME} DEFINE_SYMBOL MYGPO_MAKEDLL)
+-qt5_use_modules( ${MYGPO_QT_TARGET_NAME} Core Network )
++
++if( NOT BUILD_WITH_QT4 )
++ target_link_libraries( ${MYGPO_QT_TARGET_NAME} Qt5::Core Qt5::Network)
++else()
++ target_link_libraries( ${MYGPO_QT_TARGET_NAME} ${QT_QTCORE_LIBRARY} ${QT_QTNETWORK_LIBRARY} ${QJSON_LIBRARIES})
++endif()
+
+ install( TARGETS ${MYGPO_QT_TARGET_NAME} EXPORT ${MYGPO_QT_TARGET_NAME}Export DESTINATION ${LIB_INSTALL_DIR} )
+
+diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt
+index a3e3223..4f77158 100644
+--- a/tests/CMakeLists.txt
++++ b/tests/CMakeLists.txt
+@@ -11,11 +11,15 @@ include_directories( ${QJSON_INCLUDE_DIR} ${CMAKE_CURRENT_BINARY_DIR} ${CMAKE_CU
+
+ # UrlBuilder library
+ add_library( UrlBuilder ${TESTOBJECTS_SRCDIR}/UrlBuilder.cpp ${TESTOBJECTS_SRCDIR}/Config.cpp )
+-qt5_use_modules( UrlBuilder Core )
++if( NOT BUILD_WITH_QT4 )
++ target_link_libraries( UrlBuilder Qt5::Core )
++endif()
+ # JSONCreator library
+ QT_WRAP_CPP(LIBMYGPO_QT_MOC_SRC ${TESTOBJECTS_SRCDIR}/EpisodeAction.h ${TESTOBJECTS_SRCDIR}/EpisodeAction_p.h )
+ add_library( JsonCreator ${TESTOBJECTS_SRCDIR}/JsonCreator.cpp ${TESTOBJECTS_SRCDIR}/EpisodeAction.cpp ${TESTOBJECTS_SRCDIR}/qjsonwrapper/Json.cpp ${LIBMYGPO_QT_MOC_SRC})
+-qt5_use_modules( JsonCreator Core Network )
++if( NOT BUILD_WITH_QT4 )
++ target_link_libraries( JsonCreator Qt5::Core Qt5::Network )
++endif()
+
+ set( EXECUTABLE_OUTPUT_PATH ${CMAKE_CURRENT_BINARY_DIR} )
+
+@@ -25,7 +29,9 @@ macro(add_libmygpo_test _source)
+ add_executable(${_name} ${_source} ${${_name}_MOC_SRC})
+ target_link_libraries(${_name} ${QT_QTCORE_LIBRARY} ${QT_QTTEST_LIBRARY} ${QT_QTNETWORK_LIBRARY})
+ add_test(${_name}-test ${EXECUTABLE_OUTPUT_PATH}/${_name})
+- qt5_use_modules(${_name} Network Test)
++ if( NOT BUILD_WITH_QT4 )
++ target_link_libraries(${_name} Qt5::Network Qt5::Test)
++ endif()
+ endmacro(add_libmygpo_test)
+
+ add_libmygpo_test( UrlBuilderTest.cpp )
diff --git a/gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch b/gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch
new file mode 100644
index 0000000000..aa9ed2c0f7
--- /dev/null
+++ b/gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch
@@ -0,0 +1,51 @@
+From 0d76d960727018bddf04c6cc89552af69aaa7e55 Mon Sep 17 00:00:00 2001
+From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com>
+Date: Sun, 15 Apr 2018 22:20:34 +0200
+Subject: [PATCH] Add missing Qt5Network, Qt5Test, make BUILD_WITH_QT4 more
+ strict
+
+---
+ CMakeLists.txt | 22 +++++++++++-----------
+ 1 file changed, 11 insertions(+), 11 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 2a1f652..eb006d9 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -5,25 +5,25 @@ project( libmygpo-qt )
+ set( CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules)
+ set( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DQT_NO_CAST_FROM_ASCII -DQT_NO_CAST_TO_ASCII" )
+
+-option(BUILD_WITH_QT4 "Build libmygpo-qt with Qt4 no matter if Qt5 was found" OFF)
++option(BUILD_WITH_QT4 "Build libmygpo-qt with Qt4" OFF)
+
+ if( NOT BUILD_WITH_QT4 )
+- find_package(Qt5Core QUIET)
+- if( Qt5Core_DIR )
+- set(MYGPO_QT_VERSION_SUFFIX 5)
+-
+- macro(qt_wrap_cpp)
+- qt5_wrap_cpp(${ARGN})
+- endmacro()
++ if( MYGPO_BUILD_TESTS )
++ find_package(Qt5 REQUIRED COMPONENTS Core Network Test CONFIG)
++ else()
++ find_package(Qt5 REQUIRED COMPONENTS Core Network CONFIG)
+ endif()
++ set(MYGPO_QT_VERSION_SUFFIX 5)
++
++ macro(qt_wrap_cpp)
++ qt5_wrap_cpp(${ARGN})
++ endmacro()
+
+ # pkg-config names of QtCore and QtNetwork are Qt5Core and Qt5Network for
+ # Qt5
+ set(MYGPO_QT_MAJOR_VERSION "5")
+ set(MYGPO_QT4_QJSON_DEP "")
+-endif()
+-
+-if( NOT Qt5Core_DIR )
++else()
+ message(STATUS "Could not find Qt5, searching for Qt4 instead...")
+ message(STATUS "Qt4 Support is deprecated, building with Qt4 is no longer officially supported")
+ if( MYGPO_BUILD_TESTS )
diff --git a/gnu/packages/patches/liboop-mips64-deplibs-fix.patch b/gnu/packages/patches/liboop-mips64-deplibs-fix.patch
deleted file mode 100644
index b91754a8cc..0000000000
--- a/gnu/packages/patches/liboop-mips64-deplibs-fix.patch
+++ /dev/null
@@ -1,17 +0,0 @@
-Patch configure script to choose pass_all deplibs check method for
-linux-gnu* systems on mips64. This is a temporary hack until liboop
-bootstraps their build system with a newer libtool.
-
-Patch by Mark H Weaver <mhw@netris.org>.
-
---- liboop/configure.orig 2003-10-26 11:41:19.000000000 -0500
-+++ liboop/configure 2013-11-02 18:09:11.079995796 -0400
-@@ -3395,7 +3395,7 @@
- # This must be Linux ELF.
- linux*)
- case $host_cpu in
-- alpha* | hppa* | i*86 | ia64* | m68* | mips | mipsel | powerpc* | sparc* | s390* | sh*)
-+ alpha* | hppa* | i*86 | ia64* | m68* | mips | mipsel | mips64 | mips64el | powerpc* | sparc* | s390* | sh*)
- lt_cv_deplibs_check_method=pass_all ;;
- *)
- # glibc up to 2.1.1 does not perform some relocations on ARM
diff --git a/gnu/packages/patches/libreoffice-icu.patch b/gnu/packages/patches/libreoffice-icu.patch
new file mode 100644
index 0000000000..2985d564aa
--- /dev/null
+++ b/gnu/packages/patches/libreoffice-icu.patch
@@ -0,0 +1,126 @@
+This patch fixes the build of Libreoffice 6.0.5 with icu 61.1.
+It was downloaded from https://bugs.gentoo.org/651702.
+
+--- a/forms/source/xforms/datatypes.hxx
++++ a/forms/source/xforms/datatypes.hxx
+@@ -36,6 +36,8 @@
+
+ #include <memory>
+
++using icu::RegexMatcher;
++
+
+ namespace xforms
+ {
+--- a/i18npool/inc/collator_unicode.hxx
++++ a/i18npool/inc/collator_unicode.hxx
+@@ -26,6 +26,8 @@
+
+ #include <unicode/tblcoll.h>
+
++using icu::RuleBasedCollator;
++
+ // ----------------------------------------------------
+ // class Collator_Unicode
+ // ----------------------------------------------------
+--- a/i18npool/source/breakiterator/breakiterator_unicode.cxx
++++ a/i18npool/source/breakiterator/breakiterator_unicode.cxx
+@@ -30,6 +30,9 @@
+ #include <rtl/ustring.hxx>
+ #include <string.h>
+
++using icu::BreakIterator;
++using icu::RuleBasedBreakIterator;
++
+ U_CDECL_BEGIN
+ extern const char OpenOffice_dat[];
+ U_CDECL_END
+--- a/i18npool/source/collator/collator_unicode.cxx
++++ a/i18npool/source/collator/collator_unicode.cxx
+@@ -29,6 +29,8 @@
+ #include <com/sun/star/i18n/CollatorOptions.hpp>
+ #include <cppuhelper/supportsservice.hxx>
+
++using icu::Collator;
++
+ using namespace ::com::sun::star;
+ using namespace ::com::sun::star::i18n;
+ using namespace ::com::sun::star::lang;
+--- a/i18npool/source/collator/gencoll_rule.cxx
++++ a/i18npool/source/collator/gencoll_rule.cxx
+@@ -31,6 +31,8 @@
+
+ #include <unicode/tblcoll.h>
+
++using icu::RuleBasedCollator;
++
+ /* Main Procedure */
+
+ void data_write(char* file, char* name, sal_uInt8 *data, sal_Int32 len)
+--- a/i18npool/source/ordinalsuffix/ordinalsuffix.cxx
++++ a/i18npool/source/ordinalsuffix/ordinalsuffix.cxx
+@@ -29,6 +29,8 @@
+ #include <unicode/normlzr.h>
+ #include <memory>
+
++using icu::NumberFormat;
++
+ using namespace ::com::sun::star::i18n;
+ using namespace ::com::sun::star::uno;
+ using namespace ::com::sun::star;
+--- a/i18npool/source/transliteration/ignoreDiacritics_CTL.cxx
++++ a/i18npool/source/transliteration/ignoreDiacritics_CTL.cxx
+@@ -12,6 +12,8 @@
+ #include <unicode/translit.h>
+ #include <unicode/uchar.h>
+
++using icu::UnicodeString;
++
+ namespace i18npool {
+
+ ignoreDiacritics_CTL::ignoreDiacritics_CTL()
+--- a/i18nutil/source/utility/unicode.cxx
++++ a/i18nutil/source/utility/unicode.cxx
+@@ -34,6 +34,9 @@
+ // which (obviously) breaks UnicodeType::CURRENCY_SYMBOL
+ #undef CURRENCY_SYMBOL
+
++using icu::NumberFormat;
++using icu::UnicodeString;
++
+ using namespace ::com::sun::star::i18n;
+
+ template<class L, typename T>
+--- a/lotuswordpro/source/filter/localtime.cxx
++++ a/lotuswordpro/source/filter/localtime.cxx
+@@ -57,6 +57,8 @@
+ #include <limits.h>
+ #include <unicode/timezone.h>
+
++using icu::TimeZone;
++
+ const long DAY_SEC =24 * 60 * 60;
+ const long YEAR_SEC = 365 * DAY_SEC;
+ const long FOURYEAR_SEC = 4 * YEAR_SEC + DAY_SEC;
+--- a/opencl/source/openclconfig.cxx
++++ a/opencl/source/openclconfig.cxx
+@@ -17,6 +17,8 @@
+ #include <sal/log.hxx>
+ #include <sal/types.h>
+
++using icu::RegexMatcher;
++
+ OpenCLConfig::OpenCLConfig() :
+ mbUseOpenCL(true)
+ {
+--- a/vcl/inc/scrptrun.h
++++ a/vcl/inc/scrptrun.h
+@@ -45,6 +45,8 @@
+ #include <unicode/uscript.h>
+ #include <vector>
+
++using icu::UObject;
++
+ namespace vcl {
+
+ struct ParenStackEntry
diff --git a/gnu/packages/patches/libtasn1-CVE-2017-10790.patch b/gnu/packages/patches/libtasn1-CVE-2017-10790.patch
deleted file mode 100644
index 6cec0c8030..0000000000
--- a/gnu/packages/patches/libtasn1-CVE-2017-10790.patch
+++ /dev/null
@@ -1,63 +0,0 @@
-Fix CVE-2017-10790:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-10790
-
-Patch copied from upstream source repository:
-
-https://git.savannah.nongnu.org/cgit/libtasn1.git/commit/?id=d8d805e1f2e6799bb2dff4871a8598dc83088a39
-
-From d8d805e1f2e6799bb2dff4871a8598dc83088a39 Mon Sep 17 00:00:00 2001
-From: Nikos Mavrogiannopoulos <nmav@redhat.com>
-Date: Thu, 22 Jun 2017 16:31:37 +0200
-Subject: [PATCH] _asn1_check_identifier: safer access to values read
-
-Signed-off-by: Nikos Mavrogiannopoulos <nmav@redhat.com>
----
- lib/parser_aux.c | 17 ++++++++++++-----
- 1 file changed, 12 insertions(+), 5 deletions(-)
-
-diff --git a/lib/parser_aux.c b/lib/parser_aux.c
-index 976ab38..786ea64 100644
---- a/lib/parser_aux.c
-+++ b/lib/parser_aux.c
-@@ -955,7 +955,7 @@ _asn1_check_identifier (asn1_node node)
- if (p2 == NULL)
- {
- if (p->value)
-- _asn1_strcpy (_asn1_identifierMissing, p->value);
-+ _asn1_str_cpy (_asn1_identifierMissing, sizeof(_asn1_identifierMissing), (char*)p->value);
- else
- _asn1_strcpy (_asn1_identifierMissing, "(null)");
- return ASN1_IDENTIFIER_NOT_FOUND;
-@@ -968,9 +968,15 @@ _asn1_check_identifier (asn1_node node)
- if (p2 && (type_field (p2->type) == ASN1_ETYPE_DEFAULT))
- {
- _asn1_str_cpy (name2, sizeof (name2), node->name);
-- _asn1_str_cat (name2, sizeof (name2), ".");
-- _asn1_str_cat (name2, sizeof (name2), (char *) p2->value);
-- _asn1_strcpy (_asn1_identifierMissing, p2->value);
-+ if (p2->value)
-+ {
-+ _asn1_str_cat (name2, sizeof (name2), ".");
-+ _asn1_str_cat (name2, sizeof (name2), (char *) p2->value);
-+ _asn1_str_cpy (_asn1_identifierMissing, sizeof(_asn1_identifierMissing), (char*)p2->value);
-+ }
-+ else
-+ _asn1_strcpy (_asn1_identifierMissing, "(null)");
-+
- p2 = asn1_find_node (node, name2);
- if (!p2 || (type_field (p2->type) != ASN1_ETYPE_OBJECT_ID) ||
- !(p2->type & CONST_ASSIGN))
-@@ -990,7 +996,8 @@ _asn1_check_identifier (asn1_node node)
- _asn1_str_cpy (name2, sizeof (name2), node->name);
- _asn1_str_cat (name2, sizeof (name2), ".");
- _asn1_str_cat (name2, sizeof (name2), (char *) p2->value);
-- _asn1_strcpy (_asn1_identifierMissing, p2->value);
-+ _asn1_str_cpy (_asn1_identifierMissing, sizeof(_asn1_identifierMissing), (char*)p2->value);
-+
- p2 = asn1_find_node (node, name2);
- if (!p2 || (type_field (p2->type) != ASN1_ETYPE_OBJECT_ID)
- || !(p2->type & CONST_ASSIGN))
---
-2.13.3
-
diff --git a/gnu/packages/patches/libtasn1-CVE-2018-6003.patch b/gnu/packages/patches/libtasn1-CVE-2018-6003.patch
deleted file mode 100644
index 3e6140518d..0000000000
--- a/gnu/packages/patches/libtasn1-CVE-2018-6003.patch
+++ /dev/null
@@ -1,73 +0,0 @@
-Fix CVE-2018-6003:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-6003
-https://lists.gnu.org/archive/html/help-libtasn1/2018-01/msg00000.html
-
-Patch copied from upstream source repository:
-
-https://gitlab.com/gnutls/libtasn1/commit/c593ae84cfcde8fea45787e53950e0ac71e9ca97
-
-From c593ae84cfcde8fea45787e53950e0ac71e9ca97 Mon Sep 17 00:00:00 2001
-From: Nikos Mavrogiannopoulos <nmav@redhat.com>
-Date: Thu, 4 Jan 2018 10:52:05 +0100
-Subject: [PATCH] _asn1_decode_simple_ber: restrict the levels of recursion to 3
-
-On indefinite string decoding, setting a maximum level of recursions
-protects the BER decoder from a stack exhaustion due to large amounts
-of recursion.
-
-Signed-off-by: Nikos Mavrogiannopoulos <nmav@redhat.com>
----
- lib/decoding.c | 21 +++++++++++++++++++--
- 1 file changed, 19 insertions(+), 2 deletions(-)
-
-diff --git a/lib/decoding.c b/lib/decoding.c
-index 2240b09..0ee35d3 100644
---- a/lib/decoding.c
-+++ b/lib/decoding.c
-@@ -45,6 +45,13 @@
-
- #define DECODE_FLAG_HAVE_TAG 1
- #define DECODE_FLAG_INDEFINITE (1<<1)
-+/* On indefinite string decoding, allow this maximum levels
-+ * of recursion. Allowing infinite recursion, makes the BER
-+ * decoder susceptible to stack exhaustion due to that recursion.
-+ */
-+#define DECODE_FLAG_LEVEL1 (1<<2)
-+#define DECODE_FLAG_LEVEL2 (1<<3)
-+#define DECODE_FLAG_LEVEL3 (1<<4)
-
- #define DECR_LEN(l, s) do { \
- l -= s; \
-@@ -2216,7 +2223,8 @@ _asn1_decode_simple_ber (unsigned int etype, const unsigned char *der,
- }
-
- /* indefinite constructed */
-- if (((dflags & DECODE_FLAG_INDEFINITE) || class == ASN1_CLASS_STRUCTURED) && ETYPE_IS_STRING(etype))
-+ if ((((dflags & DECODE_FLAG_INDEFINITE) || class == ASN1_CLASS_STRUCTURED) && ETYPE_IS_STRING(etype)) &&
-+ !(dflags & DECODE_FLAG_LEVEL3))
- {
- len_len = 1;
-
-@@ -2236,8 +2244,17 @@ _asn1_decode_simple_ber (unsigned int etype, const unsigned char *der,
- do
- {
- unsigned tmp_len;
-+ unsigned flags = DECODE_FLAG_HAVE_TAG;
-+
-+ if (dflags & DECODE_FLAG_LEVEL1)
-+ flags |= DECODE_FLAG_LEVEL2;
-+ else if (dflags & DECODE_FLAG_LEVEL2)
-+ flags |= DECODE_FLAG_LEVEL3;
-+ else
-+ flags |= DECODE_FLAG_LEVEL1;
-
-- result = asn1_decode_simple_ber(etype, p, der_len, &out, &out_len, &tmp_len);
-+ result = _asn1_decode_simple_ber(etype, p, der_len, &out, &out_len, &tmp_len,
-+ flags);
- if (result != ASN1_SUCCESS)
- {
- warn();
---
-libgit2 0.26.0
-
diff --git a/gnu/packages/patches/libusb-for-axoloti.patch b/gnu/packages/patches/libusb-for-axoloti.patch
index 76a45e801d..fb94c489b0 100644
--- a/gnu/packages/patches/libusb-for-axoloti.patch
+++ b/gnu/packages/patches/libusb-for-axoloti.patch
@@ -1,8 +1,8 @@
-diff -rpu4 libusb-1.0.22.orig/libusb/descriptor.c libusb-1.0.22/libusb/descriptor.c
---- libusb-1.0.22.orig/libusb/descriptor.c 2018-03-17 08:23:37.000000000 +0100
-+++ libusb-1.0.22/libusb/descriptor.c 2018-03-29 10:36:09.968429473 +0200
-@@ -1173,9 +1173,9 @@ int API_EXPORTED libusb_get_string_descr
- if (tbuf[1] != LIBUSB_DT_STRING)
+diff --git a/libusb/descriptor.c b/libusb/descriptor.c
+index 74d6de5..0b0e314 100644
+--- a/libusb/descriptor.c
++++ b/libusb/descriptor.c
+@@ -1174,7 +1174,7 @@ int API_EXPORTED libusb_get_string_descriptor_ascii(libusb_device_handle *dev_ha
return LIBUSB_ERROR_IO;
if (tbuf[0] > r)
@@ -11,4 +11,6 @@ diff -rpu4 libusb-1.0.22.orig/libusb/descriptor.c libusb-1.0.22/libusb/descripto
di = 0;
for (si = 2; si < tbuf[0]; si += 2) {
- if (di >= (length - 1))
+--
+2.17.0
+
diff --git a/gnu/packages/patches/libutils-add-includes.patch b/gnu/packages/patches/libutils-add-includes.patch
new file mode 100644
index 0000000000..354c59b735
--- /dev/null
+++ b/gnu/packages/patches/libutils-add-includes.patch
@@ -0,0 +1,11 @@
+--- a/libutils/CallStack.cpp 2018-04-25 20:13:06.348665241 +0200
++++ b/libutils/CallStack.cpp 2018-04-25 20:13:18.360510763 +0200
+@@ -17,7 +17,7 @@
+ #define LOG_TAG "CallStack"
+
+ #include <memory>
+-
++#include <cstdlib>
+ #include <utils/CallStack.h>
+ #include <utils/Printer.h>
+ #include <utils/Errors.h>
diff --git a/gnu/packages/patches/libutils-remove-damaging-includes.patch b/gnu/packages/patches/libutils-remove-damaging-includes.patch
new file mode 100644
index 0000000000..7867dd3b80
--- /dev/null
+++ b/gnu/packages/patches/libutils-remove-damaging-includes.patch
@@ -0,0 +1,21 @@
+--- a/include/utils/StrongPointer.h 2018-04-25 18:42:34.321003602 +0200
++++ b/include/utils/StrongPointer.h 2018-04-25 18:42:42.180912201 +0200
+@@ -17,8 +17,6 @@
+ #ifndef ANDROID_STRONG_POINTER_H
+ #define ANDROID_STRONG_POINTER_H
+
+-#include <cutils/atomic.h>
+-
+ #include <stdint.h>
+ #include <sys/types.h>
+ #include <stdlib.h>
+--- a/libutils/Trace.cpp 2018-04-25 20:41:48.775049786 +0200
++++ b/libutils/Trace.cpp 2018-04-25 20:42:13.674744182 +0200
+@@ -21,5 +21,7 @@
+
+ static void traceInit()
+ {
++#if defined(__ANDROID__)
+ ::android::add_sysprop_change_callback(atrace_update_tags, 0);
++#endif
+ }
diff --git a/gnu/packages/patches/libvorbis-CVE-2017-14632.patch b/gnu/packages/patches/libvorbis-CVE-2017-14632.patch
deleted file mode 100644
index 99debf2104..0000000000
--- a/gnu/packages/patches/libvorbis-CVE-2017-14632.patch
+++ /dev/null
@@ -1,63 +0,0 @@
-Fix CVE-2017-14632:
-
-https://gitlab.xiph.org/xiph/vorbis/issues/2328
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14632
-
-Patch copied from upstream source repository:
-
-https://gitlab.xiph.org/xiph/vorbis/commit/c1c2831fc7306d5fbd7bc800324efd12b28d327f
-
-From c1c2831fc7306d5fbd7bc800324efd12b28d327f Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Guido=20G=C3=BCnther?= <agx@sigxcpu.org>
-Date: Wed, 15 Nov 2017 18:22:59 +0100
-Subject: [PATCH] CVE-2017-14632: vorbis_analysis_header_out: Don't clear opb
- if not initialized
-
-If the number of channels is not within the allowed range
-we call oggback_writeclear altough it's not initialized yet.
-
-This fixes
-
- =23371== Invalid free() / delete / delete[] / realloc()
- ==23371== at 0x4C2CE1B: free (vg_replace_malloc.c:530)
- ==23371== by 0x829CA31: oggpack_writeclear (in /usr/lib/x86_64-linux-gnu/libogg.so.0.8.2)
- ==23371== by 0x84B96EE: vorbis_analysis_headerout (info.c:652)
- ==23371== by 0x9FBCBCC: ??? (in /usr/lib/x86_64-linux-gnu/sox/libsox_fmt_vorbis.so)
- ==23371== by 0x4E524F1: ??? (in /usr/lib/x86_64-linux-gnu/libsox.so.2.0.1)
- ==23371== by 0x4E52CCA: sox_open_write (in /usr/lib/x86_64-linux-gnu/libsox.so.2.0.1)
- ==23371== by 0x10D82A: open_output_file (sox.c:1556)
- ==23371== by 0x10D82A: process (sox.c:1753)
- ==23371== by 0x10D82A: main (sox.c:3012)
- ==23371== Address 0x68768c8 is 488 bytes inside a block of size 880 alloc'd
- ==23371== at 0x4C2BB1F: malloc (vg_replace_malloc.c:298)
- ==23371== by 0x4C2DE9F: realloc (vg_replace_malloc.c:785)
- ==23371== by 0x4E545C2: lsx_realloc (in /usr/lib/x86_64-linux-gnu/libsox.so.2.0.1)
- ==23371== by 0x9FBC9A0: ??? (in /usr/lib/x86_64-linux-gnu/sox/libsox_fmt_vorbis.so)
- ==23371== by 0x4E524F1: ??? (in /usr/lib/x86_64-linux-gnu/libsox.so.2.0.1)
- ==23371== by 0x4E52CCA: sox_open_write (in /usr/lib/x86_64-linux-gnu/libsox.so.2.0.1)
- ==23371== by 0x10D82A: open_output_file (sox.c:1556)
- ==23371== by 0x10D82A: process (sox.c:1753)
- ==23371== by 0x10D82A: main (sox.c:3012)
-
-as seen when using the testcase from CVE-2017-11333 with
-008d23b782be09c8d75ba8190b1794abd66c7121 applied. However the error was
-there before.
----
- lib/info.c | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/lib/info.c b/lib/info.c
-index 7bc4ea4..8d0b2ed 100644
---- a/lib/info.c
-+++ b/lib/info.c
-@@ -589,6 +589,7 @@ int vorbis_analysis_headerout(vorbis_dsp_state *v,
- private_state *b=v->backend_state;
-
- if(!b||vi->channels<=0||vi->channels>256){
-+ b = NULL;
- ret=OV_EFAULT;
- goto err_out;
- }
---
-2.15.1
-
diff --git a/gnu/packages/patches/libvorbis-CVE-2017-14633.patch b/gnu/packages/patches/libvorbis-CVE-2017-14633.patch
deleted file mode 100644
index ec6bf5265c..0000000000
--- a/gnu/packages/patches/libvorbis-CVE-2017-14633.patch
+++ /dev/null
@@ -1,43 +0,0 @@
-Fix CVE-2017-14633:
-
-https://gitlab.xiph.org/xiph/vorbis/issues/2329
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14633
-
-Patch copied from upstream source repository:
-
-https://gitlab.xiph.org/xiph/vorbis/commit/a79ec216cd119069c68b8f3542c6a425a74ab993
-
-From a79ec216cd119069c68b8f3542c6a425a74ab993 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Guido=20G=C3=BCnther?= <agx@sigxcpu.org>
-Date: Tue, 31 Oct 2017 18:32:46 +0100
-Subject: [PATCH] CVE-2017-14633: Don't allow for more than 256 channels
-
-Otherwise
-
- for(i=0;i<vi->channels;i++){
- /* the encoder setup assumes that all the modes used by any
- specific bitrate tweaking use the same floor */
- int submap=info->chmuxlist[i];
-
-overreads later in mapping0_forward since chmuxlist is a fixed array of
-256 elements max.
----
- lib/info.c | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/lib/info.c b/lib/info.c
-index fe759ed..7bc4ea4 100644
---- a/lib/info.c
-+++ b/lib/info.c
-@@ -588,7 +588,7 @@ int vorbis_analysis_headerout(vorbis_dsp_state *v,
- oggpack_buffer opb;
- private_state *b=v->backend_state;
-
-- if(!b||vi->channels<=0){
-+ if(!b||vi->channels<=0||vi->channels>256){
- ret=OV_EFAULT;
- goto err_out;
- }
---
-2.15.1
-
diff --git a/gnu/packages/patches/libxcb-python-3.5-compat.patch b/gnu/packages/patches/libxcb-python-3.5-compat.patch
deleted file mode 100644
index f652498aad..0000000000
--- a/gnu/packages/patches/libxcb-python-3.5-compat.patch
+++ /dev/null
@@ -1,64 +0,0 @@
-Fix compatibility issue with Python 3.5.
-
-Patch copied from upstream source repository:
-
-https://cgit.freedesktop.org/xcb/libxcb/commit/?id=8740a288ca468433141341347aa115b9544891d3
-
-From 8740a288ca468433141341347aa115b9544891d3 Mon Sep 17 00:00:00 2001
-From: Thomas Klausner <wiz@NetBSD.org>
-Date: Thu, 19 May 2016 17:31:18 +0200
-Subject: [PATCH] Fix inconsistent use of tabs vs. space.
-
-Needed for at least python-3.5.x.
-
-Signed-off-by: Thomas Klausner <wiz@NetBSD.org>
-Signed-off-by: Uli Schlachter <psychon@znc.in>
----
- src/c_client.py | 14 +++++++-------
- 1 file changed, 7 insertions(+), 7 deletions(-)
-
-diff --git a/src/c_client.py b/src/c_client.py
-index 57de3fb..043338d 100644
---- a/src/c_client.py
-+++ b/src/c_client.py
-@@ -1364,7 +1364,7 @@ def _c_serialize(context, self):
- _c(' unsigned int xcb_align_to = 0;')
- if self.is_switch:
- _c(' unsigned int xcb_padding_offset = %d;',
-- self.get_align_offset() )
-+ self.get_align_offset() )
- prefix = [('_aux', '->', self)]
- aux_ptr = 'xcb_out'
-
-@@ -1390,7 +1390,7 @@ def _c_serialize(context, self):
- _c(' unsigned int xcb_align_to = 0;')
- if self.is_switch:
- _c(' unsigned int xcb_padding_offset = %d;',
-- self.get_align_offset() )
-+ self.get_align_offset() )
-
- elif 'sizeof' == context:
- param_names = [p[2] for p in params]
-@@ -1930,14 +1930,14 @@ def _c_accessors_list(self, field):
- # from the request size and divide that by the member size
- return '(((R->length * 4) - sizeof('+ self.c_type + '))/'+'sizeof('+field.type.member.c_wiretype+'))'
- else:
-- # use the accessor to get the start of the list, then
-- # compute the length of it by subtracting it from
-+ # use the accessor to get the start of the list, then
-+ # compute the length of it by subtracting it from
- # the adress of the first byte after the end of the
- # request
-- after_end_of_request = '(((char*)R) + R->length * 4)'
-- start_of_list = '%s(R)' % (field.c_accessor_name)
-+ after_end_of_request = '(((char*)R) + R->length * 4)'
-+ start_of_list = '%s(R)' % (field.c_accessor_name)
- bytesize_of_list = '%s - (char*)(%s)' % (after_end_of_request, start_of_list)
-- return '(%s) / sizeof(%s)' % (bytesize_of_list, field.type.member.c_wiretype)
-+ return '(%s) / sizeof(%s)' % (bytesize_of_list, field.type.member.c_wiretype)
- else:
- raise Exception(
- "lengthless lists with varsized members are not supported. Fieldname '%s'"
---
-2.11.1
-
diff --git a/gnu/packages/patches/libziparchive-add-includes.patch b/gnu/packages/patches/libziparchive-add-includes.patch
new file mode 100644
index 0000000000..41137105a0
--- /dev/null
+++ b/gnu/packages/patches/libziparchive-add-includes.patch
@@ -0,0 +1,10 @@
+--- a/libziparchive/zip_writer.cc 2018-04-25 22:33:05.472674164 +0200
++++ b/libziparchive/zip_writer.cc 2018-04-25 22:33:21.296519518 +0200
+@@ -22,6 +22,7 @@
+
+ #include <sys/param.h>
+
++#include <cstring>
+ #include <cassert>
+ #include <cstdio>
+ #include <memory>
diff --git a/gnu/packages/patches/make-glibc-compat.patch b/gnu/packages/patches/make-glibc-compat.patch
new file mode 100644
index 0000000000..9ce7f2b5bf
--- /dev/null
+++ b/gnu/packages/patches/make-glibc-compat.patch
@@ -0,0 +1,52 @@
+Work with the new glob interface in glibc 2.27.
+
+Taken from this upstream commit:
+https://git.savannah.gnu.org/cgit/make.git/commit/?id=193f1e81edd6b1b56b0eb0ff8aa4b41c7b4257b4
+
+diff --git a/dir.c b/dir.c
+index adbb8a9..c343e4c 100644
+--- a/dir.c
++++ b/dir.c
+@@ -1299,15 +1299,40 @@ local_stat (const char *path, struct stat *buf)
+ }
+ #endif
+
++/* Similarly for lstat. */
++#if !defined(lstat) && !defined(WINDOWS32) || defined(VMS)
++# ifndef VMS
++# ifndef HAVE_SYS_STAT_H
++int lstat (const char *path, struct stat *sbuf);
++# endif
++# else
++ /* We are done with the fake lstat. Go back to the real lstat */
++# ifdef lstat
++# undef lstat
++# endif
++# endif
++# define local_lstat lstat
++#elif defined(WINDOWS32)
++/* Windows doesn't support lstat(). */
++# define local_lstat local_stat
++#else
++static int
++local_lstat (const char *path, struct stat *buf)
++{
++ int e;
++ EINTRLOOP (e, lstat (path, buf));
++ return e;
++}
++#endif
++
+ void
+ dir_setup_glob (glob_t *gl)
+ {
+ gl->gl_opendir = open_dirstream;
+ gl->gl_readdir = read_dirstream;
+ gl->gl_closedir = free;
++ gl->gl_lstat = local_lstat;
+ gl->gl_stat = local_stat;
+- /* We don't bother setting gl_lstat, since glob never calls it.
+- The slot is only there for compatibility with 4.4 BSD. */
+ }
+
+ void
diff --git a/gnu/packages/patches/maven-generate-component-xml.patch b/gnu/packages/patches/maven-generate-component-xml.patch
new file mode 100644
index 0000000000..6cb23c7858
--- /dev/null
+++ b/gnu/packages/patches/maven-generate-component-xml.patch
@@ -0,0 +1,171 @@
+From da9e282d834f0e2128501a8154128dc95b4c599d Mon Sep 17 00:00:00 2001
+From: Julien Lepiller <julien@lepiller.eu>
+Date: Sat, 9 Sep 2017 20:34:38 +0200
+Subject: [PATCH] Add a script to generate component.xml files.
+
+plexus-component-metadata is normally used for this task, but it
+depends on maven-core, which depends on maven-model-builder, which needs
+plexus-component-metadata. This script is meant to break this dependency
+cycle.
+---
+ components.sh | 132 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+ 1 file changed, 132 insertions(+)
+ create mode 100755 components.sh
+
+diff --git a/components.sh b/components.sh
+new file mode 100755
+index 0000000..c6748bd
+--- /dev/null
++++ b/components.sh
+@@ -0,0 +1,148 @@
++## This script generates a rough plexus/components.xml file. It is meant to
++## replace plexus-component-metadata as it eventually has a recursive dependency
++## on itself.
++##
++## This script must be run in the source directory (usually src/main/java).
++
++# Finds the complete name from a class name.
++function find_role() {
++ role=$1
++ # Find role
++ case $role in
++ "SettingsWriter" | "SettingsReader")
++ role=org.apache.maven.settings.io.$role
++ ;;
++ "SecDispatcher")
++ role=org.sonatype.plexus.components.sec.dispatcher.$role
++ ;;
++ "SettingsDecrypter")
++ role=org.apache.maven.settings.crypto.$role
++ ;;
++ "SettingsBuilder")
++ role=org.apache.maven.settings.building.$role
++ ;;
++ "SettingsValidator")
++ role=org.apache.maven.settings.validation.$role
++ ;;
++ "LoggerFactory")
++ role=org.eclipse.aether.spi.log.$role
++ ;;
++ "RemoteRepositoryManager" | "VersionResolver" | "VersionRangeResolver" \
++ | "ArtifactResolver" | "RepositoryEventDispatcher" | "MetadataResolver" \
++ | "SyncContextFactory" | "MetadataGeneratorFactory" | "MetadatResolver" \
++ | "ArtifactDescriptorReader")
++ role=org.eclipse.aether.impl.$role
++ ;;
++ "ModelBuilder" | "ModelProcessor")
++ role=org.apache.maven.model.building.$role
++ ;;
++ "ModelValidator")
++ role=org.apache.maven.model.validation.$role
++ ;;
++ "ProfileInjector" | "ProfileSelector")
++ role=org.apache.maven.model.profile.$role
++ ;;
++ "ProfileActivator")
++ role=org.apache.maven.model.profile.activation.$role
++ ;;
++ "SuperPomProvider")
++ role=org.apache.maven.model.superpom.$role
++ ;;
++ "ReportConfigurationExpander" | "PluginConfigurationExpander" \
++ | "ReportingConverter" | "LifecycleBindingsInjector")
++ role=org.apache.maven.model.plugin.$role
++ ;;
++ "ModelLocator")
++ role=org.apache.maven.model.locator.$role
++ ;;
++ "ModelPathTranslator" | "PathTranslator" | "UrlNormalizer" | "ModelUrlNormalizer")
++ role=org.apache.maven.model.path.$role
++ ;;
++ "DependencyManagementInjector" | "PluginManagementInjector")
++ role=org.apache.maven.model.management.$role
++ ;;
++ "ModelWriter" | "ModelReader")
++ role=org.apache.maven.model.io.$role
++ ;;
++ "DependencyManagementImporter")
++ role=org.apache.maven.model.composition.$role
++ ;;
++ "ModelNormalizer")
++ role=org.apache.maven.model.normalization.$role
++ ;;
++ "ModelInterpolator")
++ role=org.apache.maven.model.interpolation.$role
++ ;;
++ "InheritanceAssembler")
++ role=org.apache.maven.model.inheritance.$role
++ ;;
++ *)
++ role=$role
++ ;;
++ esac
++ echo $role
++}
++
++function generate_xml() {
++echo "<?xml version=\"1.0\" encoding=\"UTF-8\"?>"
++echo "<component-set>"
++echo "<components>"
++
++for file in `find -name '*.java'`; do
++ annot=`grep "@Component" $file`
++ if [ "$?" == "0" ]; then
++ # We have a component!
++ role=$(echo $annot | sed 's|.*role = \(.*\).class.*|\1|')
++ role_hint=$(echo $annot | sed 's|.*hint = "\(.*\)" .*|\1|')
++ if [ "$role_hint" = "$annot" ]; then
++ role_hint=default
++ fi
++ implem=$(echo $file | sed -e 's|^\./||' -e 's|\.java||' -e 's|/|.|g')
++ role=$(find_role $role)
++
++ echo "<component>"
++ echo " <role>$role</role>"
++ echo " <role-hint>$role_hint</role-hint>"
++ echo " <implementation>$implem</implementation>"
++ echo " <description />"
++ echo " <isolated-realm>false</isolated-realm>"
++ echo " <requirements>"
++ reqn=1
++ cont=true
++ while [ "$cont" = "true" ]; do
++ requirement=$(grep "@Requirement" $file -A1 | head -n ${reqn} | tail -1)
++ ((reqn++))
++ property=$(grep "@Requirement" $file -A1 | head -n ${reqn} | tail -1)
++ if (echo $requirement | grep "@Requirement" >/dev/null); then
++ ((reqn++))
++ ((reqn++))
++ optional=$(echo $requirement | sed 's|.*optional = \(.*\) .*|\1|')
++ req_role=$(echo $requirement | sed 's|.*role = \(.*\).class .*|\1|')
++ if (echo $req_role | grep "@Requirement" >/dev/null); then
++ req_role=$(echo $property | sed 's|.*private \(.*\) .*|\1|')
++ fi
++ req_role=$(find_role $req_role)
++ req_name=$(echo $property | sed 's|[^ ]* [^ ]* \([^ ;]*\).*|\1|')
++ echo " <requirement>"
++ echo " <role>$req_role</role>"
++ echo " <field-name>$req_name</field-name>"
++ if (echo $optional | grep "@Requirement" >/dev/null); then
++ :
++ else
++ echo " <optional>$optional</optional>"
++ fi
++ echo " </requirement>"
++ else
++ cont=false
++ fi
++ done
++ echo " </requirements>"
++ echo "</component>"
++ fi
++done
++
++echo "</components>"
++echo "</component-set>"
++}
++
++(cd $1; generate_xml) > $2
+--
+2.14.1
+
diff --git a/gnu/packages/patches/maven-generate-javax-inject-named.patch b/gnu/packages/patches/maven-generate-javax-inject-named.patch
new file mode 100644
index 0000000000..b8eba5ab90
--- /dev/null
+++ b/gnu/packages/patches/maven-generate-javax-inject-named.patch
@@ -0,0 +1,31 @@
+From 1d20c0e403f1a38d4aca830e0eb4db03ba43efd3 Mon Sep 17 00:00:00 2001
+From: Julien Lepiller <julien@lepiller.eu>
+Date: Tue, 19 Sep 2017 22:21:29 +0200
+Subject: [PATCH] Add sisu-maven-plugin replacement
+
+---
+ sisu.sh | 12 ++++++++++++
+ 1 file changed, 12 insertions(+)
+ create mode 100755 sisu.sh
+
+diff --git a/sisu.sh b/sisu.sh
+new file mode 100755
+index 0000000..979f373
+--- /dev/null
++++ b/sisu.sh
+@@ -0,0 +1,12 @@
++## This script generates a rough javax.inject.Named file. It is meant to
++## replace sisu-maven-plugin as it eventually has a recursive dependency
++## on maven.
++##
++## This script must be run in the source directory (usually src/main/java).
++
++for file in `(cd $1; find -name '*.java')`; do
++ annot=`grep "^@Named" $1/$file`
++ if [ "$annot" != "" ]; then
++ echo $file | sed -e 's|^\./||' -e 's|\.java||' -e 's|/|.|g'
++ fi
++done > $2
+--
+2.14.1
+
diff --git a/gnu/packages/patches/mumble-1.2.19-abs.patch b/gnu/packages/patches/mumble-1.2.19-abs.patch
new file mode 100644
index 0000000000..683325f4bc
--- /dev/null
+++ b/gnu/packages/patches/mumble-1.2.19-abs.patch
@@ -0,0 +1,31 @@
+From ea861fe86743c8402bbad77d8d1dd9de8dce447e Mon Sep 17 00:00:00 2001
+From: Mikkel Krautz <mikkel@krautz.dk>
+Date: Fri, 29 Dec 2017 14:47:25 +0100
+Subject: [PATCH] AudioOutput: do not use non-existant template version of
+ std::abs.
+
+This change fixes AudioOutput to use the float overload of std::abs:
+
+ float std::abs(float);
+
+instead of a non-existant template version (for newer Boost 1.66).
+
+Fixes mumble-voip/mumble#3281
+
+---
+ src/mumble/AudioOutput.cpp | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/mumble/AudioOutput.cpp b/src/mumble/AudioOutput.cpp
+index cbe0c0e2b..7a0a5e2ab 100644
+--- a/src/mumble/AudioOutput.cpp
++++ b/src/mumble/AudioOutput.cpp
+@@ -437,7 +437,7 @@ bool AudioOutput::mix(void *outbuff, unsigned int nsamp) {
+ top[2] = 0.0f;
+ }
+
+- if (std::abs<float>(front[0] * top[0] + front[1] * top[1] + front[2] * top[2]) > 0.01f) {
++ if (std::abs(front[0] * top[0] + front[1] * top[1] + front[2] * top[2]) > 0.01f) {
+ // Not perpendicular. Assume Y up and rotate 90 degrees.
+
+ float azimuth = 0.0f;
diff --git a/gnu/packages/patches/mupdf-CVE-2017-17858.patch b/gnu/packages/patches/mupdf-CVE-2017-17858.patch
deleted file mode 100644
index 66df127509..0000000000
--- a/gnu/packages/patches/mupdf-CVE-2017-17858.patch
+++ /dev/null
@@ -1,111 +0,0 @@
-Fix CVE-2017-17858:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17858
-https://bugs.ghostscript.com/show_bug.cgi?id=698819
-https://github.com/mzet-/Security-Advisories/blob/master/mzet-adv-2017-01.md
-
-Patch copied from upstream source repository:
-
-https://git.ghostscript.com/?p=mupdf.git;a=commit;h=55c3f68d638ac1263a386e0aaa004bb6e8bde731
-
-From 55c3f68d638ac1263a386e0aaa004bb6e8bde731 Mon Sep 17 00:00:00 2001
-From: Sebastian Rasmussen <sebras@gmail.com>
-Date: Mon, 11 Dec 2017 14:09:15 +0100
-Subject: [PATCH] Bugs 698804/698810/698811: Keep PDF object numbers below
- limit.
-
-This ensures that:
- * xref tables with objects pointers do not grow out of bounds.
- * other readers, e.g. Adobe Acrobat can parse PDFs written by mupdf.
----
- include/mupdf/pdf/object.h | 3 +++
- source/pdf/pdf-repair.c | 5 +----
- source/pdf/pdf-xref.c | 21 ++++++++++++---------
- 3 files changed, 16 insertions(+), 13 deletions(-)
-
-diff --git a/include/mupdf/pdf/object.h b/include/mupdf/pdf/object.h
-index 21ed8595..4177112b 100644
---- a/include/mupdf/pdf/object.h
-+++ b/include/mupdf/pdf/object.h
-@@ -3,6 +3,9 @@
-
- typedef struct pdf_document_s pdf_document;
-
-+/* Defined in PDF 1.7 according to Acrobat limit. */
-+#define PDF_MAX_OBJECT_NUMBER 8388607
-+
- /*
- * Dynamic objects.
- * The same type of objects as found in PDF and PostScript.
-diff --git a/source/pdf/pdf-repair.c b/source/pdf/pdf-repair.c
-index ca149bd3..0c29758e 100644
---- a/source/pdf/pdf-repair.c
-+++ b/source/pdf/pdf-repair.c
-@@ -6,9 +6,6 @@
-
- /* Scan file for objects and reconstruct xref table */
-
--/* Define in PDF 1.7 to be 8388607, but mupdf is more lenient. */
--#define MAX_OBJECT_NUMBER (10 << 20)
--
- struct entry
- {
- int num;
-@@ -436,7 +433,7 @@ pdf_repair_xref(fz_context *ctx, pdf_document *doc)
- break;
- }
-
-- if (num <= 0 || num > MAX_OBJECT_NUMBER)
-+ if (num <= 0 || num > PDF_MAX_OBJECT_NUMBER)
- {
- fz_warn(ctx, "ignoring object with invalid object number (%d %d R)", num, gen);
- goto have_next_token;
-diff --git a/source/pdf/pdf-xref.c b/source/pdf/pdf-xref.c
-index 00586dbd..6284e70b 100644
---- a/source/pdf/pdf-xref.c
-+++ b/source/pdf/pdf-xref.c
-@@ -868,11 +868,12 @@ pdf_read_old_xref(fz_context *ctx, pdf_document *doc, pdf_lexbuf *buf)
- fz_seek(ctx, file, -(2 + (int)strlen(s)), SEEK_CUR);
- }
-
-- if (ofs < 0)
-- fz_throw(ctx, FZ_ERROR_GENERIC, "out of range object num in xref: %d", (int)ofs);
-- if (ofs > INT64_MAX - len)
-- fz_throw(ctx, FZ_ERROR_GENERIC, "xref section object numbers too big");
--
-+ if (ofs < 0 || ofs > PDF_MAX_OBJECT_NUMBER
-+ || len < 0 || len > PDF_MAX_OBJECT_NUMBER
-+ || ofs + len - 1 > PDF_MAX_OBJECT_NUMBER)
-+ {
-+ fz_throw(ctx, FZ_ERROR_GENERIC, "xref subsection object numbers are out of range");
-+ }
- /* broken pdfs where size in trailer undershoots entries in xref sections */
- if (ofs + len > xref_len)
- {
-@@ -933,10 +934,8 @@ pdf_read_new_xref_section(fz_context *ctx, pdf_document *doc, fz_stream *stm, in
- pdf_xref_entry *table;
- int i, n;
-
-- if (i0 < 0 || i1 < 0 || i0 > INT_MAX - i1)
-- fz_throw(ctx, FZ_ERROR_GENERIC, "negative xref stream entry index");
-- //if (i0 + i1 > pdf_xref_len(ctx, doc))
-- // fz_throw(ctx, FZ_ERROR_GENERIC, "xref stream has too many entries");
-+ if (i0 < 0 || i0 > PDF_MAX_OBJECT_NUMBER || i1 < 0 || i1 > PDF_MAX_OBJECT_NUMBER || i0 + i1 - 1 > PDF_MAX_OBJECT_NUMBER)
-+ fz_throw(ctx, FZ_ERROR_GENERIC, "xref subsection object numbers are out of range");
-
- table = pdf_xref_find_subsection(ctx, doc, i0, i1);
- for (i = i0; i < i0 + i1; i++)
-@@ -2086,6 +2085,10 @@ pdf_create_object(fz_context *ctx, pdf_document *doc)
- /* TODO: reuse free object slots by properly linking free object chains in the ofs field */
- pdf_xref_entry *entry;
- int num = pdf_xref_len(ctx, doc);
-+
-+ if (num > PDF_MAX_OBJECT_NUMBER)
-+ fz_throw(ctx, FZ_ERROR_GENERIC, "too many objects stored in pdf");
-+
- entry = pdf_get_incremental_xref_entry(ctx, doc, num);
- entry->type = 'f';
- entry->ofs = -1;
---
-2.16.1
-
diff --git a/gnu/packages/patches/mupdf-CVE-2018-1000051.patch b/gnu/packages/patches/mupdf-CVE-2018-1000051.patch
deleted file mode 100644
index bb78c46f80..0000000000
--- a/gnu/packages/patches/mupdf-CVE-2018-1000051.patch
+++ /dev/null
@@ -1,88 +0,0 @@
-Fix CVE-2018-1000051:
-
-https://bugs.ghostscript.com/show_bug.cgi?id=698873
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-1000051
-
-Patch copied from upstream source repository:
-
-https://git.ghostscript.com/?p=mupdf.git;a=commit;h=321ba1de287016b0036bf4a56ce774ad11763384
-
-From 321ba1de287016b0036bf4a56ce774ad11763384 Mon Sep 17 00:00:00 2001
-From: Sebastian Rasmussen <sebras@gmail.com>
-Date: Tue, 19 Dec 2017 23:47:47 +0100
-Subject: [PATCH] Bug 698825: Do not drop borrowed colorspaces.
-
-Previously the borrowed colorspace was dropped when updating annotation
-appearances, leading to use after free warnings from valgrind/ASAN.
----
- source/pdf/pdf-appearance.c | 8 ++------
- 1 file changed, 2 insertions(+), 6 deletions(-)
-
-diff --git a/source/pdf/pdf-appearance.c b/source/pdf/pdf-appearance.c
-index 70f684f4..d7a1dddd 100644
---- a/source/pdf/pdf-appearance.c
-+++ b/source/pdf/pdf-appearance.c
-@@ -2170,7 +2170,6 @@ void pdf_update_free_text_annot_appearance(fz_context *ctx, pdf_document *doc, p
- fz_device *dev = NULL;
- font_info font_rec;
- fz_text *text = NULL;
-- fz_colorspace *cs = NULL;
- fz_matrix page_ctm;
-
- pdf_page_transform(ctx, annot->page, NULL, &page_ctm);
-@@ -2184,11 +2183,11 @@ void pdf_update_free_text_annot_appearance(fz_context *ctx, pdf_document *doc, p
- fz_var(dlist);
- fz_var(dev);
- fz_var(text);
-- fz_var(cs);
- fz_try(ctx)
- {
- char *contents = pdf_to_str_buf(ctx, pdf_dict_get(ctx, obj, PDF_NAME_Contents));
- char *da = pdf_to_str_buf(ctx, pdf_dict_get(ctx, obj, PDF_NAME_DA));
-+ fz_colorspace *cs;
- fz_point pos;
- fz_rect rect;
-
-@@ -2223,7 +2222,6 @@ void pdf_update_free_text_annot_appearance(fz_context *ctx, pdf_document *doc, p
- fz_drop_display_list(ctx, dlist);
- font_info_fin(ctx, &font_rec);
- fz_drop_text(ctx, text);
-- fz_drop_colorspace(ctx, cs);
- }
- fz_catch(ctx)
- {
-@@ -2359,7 +2357,6 @@ void pdf_set_signature_appearance(fz_context *ctx, pdf_document *doc, pdf_annot
- fz_device *dev = NULL;
- font_info font_rec;
- fz_text *text = NULL;
-- fz_colorspace *cs = NULL;
- fz_path *path = NULL;
- fz_buffer *fzbuf = NULL;
- fz_matrix page_ctm;
-@@ -2375,7 +2372,6 @@ void pdf_set_signature_appearance(fz_context *ctx, pdf_document *doc, pdf_annot
- fz_var(dlist);
- fz_var(dev);
- fz_var(text);
-- fz_var(cs);
- fz_var(fzbuf);
- fz_try(ctx)
- {
-@@ -2384,6 +2380,7 @@ void pdf_set_signature_appearance(fz_context *ctx, pdf_document *doc, pdf_annot
- fz_rect logo_bounds;
- fz_matrix logo_tm;
- fz_rect rect;
-+ fz_colorspace *cs = fz_device_rgb(ctx); /* Borrowed reference */
-
- pdf_to_rect(ctx, pdf_dict_get(ctx, annot->obj, PDF_NAME_Rect), &annot_rect);
- rect = annot_rect;
-@@ -2396,7 +2393,6 @@ void pdf_set_signature_appearance(fz_context *ctx, pdf_document *doc, pdf_annot
- fz_bound_path(ctx, path, NULL, &fz_identity, &logo_bounds);
- center_rect_within_rect(&logo_bounds, &rect, &logo_tm);
- fz_concat(&logo_tm, &logo_tm, &page_ctm);
-- cs = fz_device_rgb(ctx); /* Borrowed reference */
- fz_fill_path(ctx, dev, path, 0, &logo_tm, cs, logo_color, 1.0f, NULL);
-
- get_font_info(ctx, doc, dr, da, &font_rec);
---
-2.16.3
-
diff --git a/gnu/packages/patches/mupdf-CVE-2018-6544.patch b/gnu/packages/patches/mupdf-CVE-2018-6544.patch
deleted file mode 100644
index b2c8f849f3..0000000000
--- a/gnu/packages/patches/mupdf-CVE-2018-6544.patch
+++ /dev/null
@@ -1,109 +0,0 @@
-Fix CVE-2018-6544:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-6544
-https://bugs.ghostscript.com/show_bug.cgi?id=698830
-https://bugs.ghostscript.com/show_bug.cgi?id=698965
-
-Patches copied from upstream source repository:
-
-https://git.ghostscript.com/?p=mupdf.git;h=26527eef77b3e51c2258c8e40845bfbc015e405d
-https://git.ghostscript.com/?p=mupdf.git;h=b03def134988da8c800adac1a38a41a1f09a1d89
-
-From b03def134988da8c800adac1a38a41a1f09a1d89 Mon Sep 17 00:00:00 2001
-From: Sebastian Rasmussen <sebras@gmail.com>
-Date: Thu, 1 Feb 2018 16:36:14 +0100
-Subject: [PATCH] Bug 698830: Avoid recursion when loading object streams
- objects.
-
-If there were indirect references in the object stream dictionary and
-one of those indirect references referred to an object inside the object
-stream itself, mupdf would previously enter recursion only bounded by the
-exception stack. After this commit the object stream is checked if it is
-marked immediately after being loaded. If it is marked then we terminate
-the recursion at this point, if it is not marked then mark it and
-attempt to load the desired object within. We also take care to unmark
-the stream object when done or upon exception.
----
- source/pdf/pdf-xref.c | 14 ++++++++++++++
- 1 file changed, 14 insertions(+)
-
-diff --git a/source/pdf/pdf-xref.c b/source/pdf/pdf-xref.c
-index 723b543c..ed09094c 100644
---- a/source/pdf/pdf-xref.c
-+++ b/source/pdf/pdf-xref.c
-@@ -1576,6 +1576,19 @@ pdf_load_obj_stm(fz_context *ctx, pdf_document *doc, int num, pdf_lexbuf *buf, i
- {
- objstm = pdf_load_object(ctx, doc, num);
-
-+ if (pdf_obj_marked(ctx, objstm))
-+ fz_throw(ctx, FZ_ERROR_GENERIC, "recursive object stream lookup");
-+ }
-+ fz_catch(ctx)
-+ {
-+ pdf_drop_obj(ctx, objstm);
-+ fz_rethrow(ctx);
-+ }
-+
-+ fz_try(ctx)
-+ {
-+ pdf_mark_obj(ctx, objstm);
-+
- count = pdf_to_int(ctx, pdf_dict_get(ctx, objstm, PDF_NAME_N));
- first = pdf_to_int(ctx, pdf_dict_get(ctx, objstm, PDF_NAME_First));
-
-@@ -1655,6 +1668,7 @@ pdf_load_obj_stm(fz_context *ctx, pdf_document *doc, int num, pdf_lexbuf *buf, i
- fz_drop_stream(ctx, stm);
- fz_free(ctx, ofsbuf);
- fz_free(ctx, numbuf);
-+ pdf_unmark_obj(ctx, objstm);
- pdf_drop_obj(ctx, objstm);
- }
- fz_catch(ctx)
---
-2.16.3
-
-From 26527eef77b3e51c2258c8e40845bfbc015e405d Mon Sep 17 00:00:00 2001
-From: Sebastian Rasmussen <sebras@gmail.com>
-Date: Mon, 29 Jan 2018 02:00:48 +0100
-Subject: [PATCH] Bug 698830: Don't drop unkept stream if running out of error
- stack.
-
-Under normal conditions where fz_keep_stream() is called inside
-fz_try() we may call fz_drop_stream() in fz_catch() upon exceptions.
-The issue comes when fz_keep_stream() has not yet been called but is
-dropped in fz_catch(). This happens in the PDF from the bug when
-fz_try() runs out of exception stack, and next the code in fz_catch()
-runs, dropping the caller's reference to the filter chain stream!
-
-The simplest way of fixing this it to always keep the filter chain
-stream before fz_try() is called. That way fz_catch() may drop the
-stream whether an exception has occurred or if the fz_try() ran out of
-exception stack.
----
- source/pdf/pdf-stream.c | 5 ++---
- 1 file changed, 2 insertions(+), 3 deletions(-)
-
-diff --git a/source/pdf/pdf-stream.c b/source/pdf/pdf-stream.c
-index c89da5c4..c6ba7ad3 100644
---- a/source/pdf/pdf-stream.c
-+++ b/source/pdf/pdf-stream.c
-@@ -303,14 +303,13 @@ pdf_open_raw_filter(fz_context *ctx, fz_stream *chain, pdf_document *doc, pdf_ob
- *orig_gen = 0;
- }
-
-- fz_var(chain);
-+ chain = fz_keep_stream(ctx, chain);
-
- fz_try(ctx)
- {
- len = pdf_to_int(ctx, pdf_dict_get(ctx, stmobj, PDF_NAME_Length));
-
-- /* don't close chain when we close this filter */
-- chain2 = fz_keep_stream(ctx, chain);
-+ chain2 = chain;
- chain = NULL;
- chain = fz_open_null(ctx, chain2, len, offset);
-
---
-2.16.3
-
diff --git a/gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch b/gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch
deleted file mode 100644
index d5c9c60242..0000000000
--- a/gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-Make it possible to build MuPDF with OpenJPEG 2.3, which is the latest
-release series and contains many important bug fixes.
-
-Patch adapted from Debian:
-
-https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=745246
-
-And related to this upstream commit:
-
-http://git.ghostscript.com/?p=mupdf.git;a=commit;h=f88bfe2e62dbadb96d4f52d7aa025f0a516078da
-
-diff --git a/source/fitz/load-jpx.c b/source/fitz/load-jpx.c
-index 65699ba..ea84778 100644
---- a/source/fitz/load-jpx.c
-+++ b/source/fitz/load-jpx.c
-@@ -445,11 +445,6 @@ fz_load_jpx_info(fz_context *ctx, const unsigned char *data, size_t size, int *w
-
- #else /* HAVE_LURATECH */
-
--#define OPJ_STATIC
--#define OPJ_HAVE_INTTYPES_H
--#if !defined(_MSC_VER) || _MSC_VER >= 1600
--#define OPJ_HAVE_STDINT_H
--#endif
- #define USE_JPIP
-
- #include <openjpeg.h>
diff --git a/gnu/packages/patches/myrepos-CVE-2018-7032.patch b/gnu/packages/patches/myrepos-CVE-2018-7032.patch
new file mode 100644
index 0000000000..ce9493e5f9
--- /dev/null
+++ b/gnu/packages/patches/myrepos-CVE-2018-7032.patch
@@ -0,0 +1,69 @@
+http://source.myrepos.branchable.com/?p=source.git;a=patch;h=40a3df21c73f1bb1b6915cc6fa503f50814664c8
+This can be removed with the next release. It was modified slightly to apply
+
+From 40a3df21c73f1bb1b6915cc6fa503f50814664c8 Mon Sep 17 00:00:00 2001
+From: Paul Wise <pabs3@bonedaddy.net>
+Date: Sun, 11 Feb 2018 21:57:49 +0800
+Subject: [PATCH] Mitigate vulnerabilities caused by some git remotes being
+ able to execute code
+
+Set GIT_PROTOCOL_FROM_USER=0 with git versions newer than 2.12.
+
+Prevent remote websites from causing cloning of local repositories.
+
+Manually whitelist known-safe protocols (http, https, git, ssh)
+when using git versions older than 2.12.
+
+Fixes: CVE-2018-7032
+Fixes: https://bugs.debian.org/840014
+Suggestions-by: Jakub Wilk <jwilk@jwilk.net>
+Reported-by: Jakub Wilk <jwilk@jwilk.net>
+---
+ webcheckout | 22 +++++++++++++++++++++-
+ 1 file changed, 21 insertions(+), 1 deletion(-)
+
+diff --git a/webcheckout b/webcheckout
+index e98da5c..de497ba 100755
+--- a/webcheckout
++++ b/webcheckout
+@@ -71,6 +71,16 @@ use Getopt::Long;
+ use warnings;
+ use strict;
+
++# Mitigate some git remote types being dangerous
++my $git_unsafe = 1;
++my $git_version = `git --version`;
++$git_version =~ s{^git version }{};
++my ($major, $minor) = split(/\./, $git_version);
++if (int($major) >= 2 && int($minor) >= 12) {
++ $ENV{GIT_PROTOCOL_FROM_USER} = 0;
++ $git_unsafe = 0;
++}
++
+ # What to download.
+ my $url;
+
+@@ -89,7 +99,17 @@ my $destdir;
+
+ # how to perform checkouts
+ my %handlers=(
+- git => sub { doit("git", "clone", shift, $destdir) },
+- svn => sub { doit("svn", "checkout", shift, $destdir) },
+- bzr => sub { doit("bzr", "branch", shift, $destdir) },
++ git => sub {
++ my $git_url = shift;
++ # Reject unsafe URLs with older versions of git
++ # that do not already check the URL safety.
++ if ($git_unsafe && $git_url !~ m{^(?:(?:https?|git|ssh):[^:]|(?:[-_.A-Za-z0-9]+@)?[-_.A-Za-z0-9]+:(?!:|//))}) {
++ print STDERR "potentially unsafe git URL, may fail, touch local files or execute arbitrary code\n";
++ return 1;
++ }
++ # Reject cloning local directories too, webcheckout is for remote repos
++ doit(qw(git -c protocol.file.allow=user clone --), $git_url, $destdir)
++ },
++ svn => sub { doit(qw(svn checkout --), shift, $destdir) },
++ bzr => sub { doit(qw(bzr branch --), shift, $destdir) },
+ );
+--
+2.11.0
+
diff --git a/gnu/packages/patches/opensmtpd-fix-crash.patch b/gnu/packages/patches/opensmtpd-fix-crash.patch
new file mode 100644
index 0000000000..0030167533
--- /dev/null
+++ b/gnu/packages/patches/opensmtpd-fix-crash.patch
@@ -0,0 +1,44 @@
+From 9b5f70b93e038df5446bd37a4adac5a0380748e7 Mon Sep 17 00:00:00 2001
+From: johannes <johannes.brechtmann@gmail.com>
+Date: Wed, 21 Feb 2018 23:57:11 +0100
+Subject: [PATCH] crypt_checkpass: include HAVE_CRYPT_H definition, add NULL
+ check
+
+---
+ openbsd-compat/crypt_checkpass.c | 9 ++++++++-
+ 1 file changed, 8 insertions(+), 1 deletion(-)
+
+diff --git a/openbsd-compat/crypt_checkpass.c b/openbsd-compat/crypt_checkpass.c
+index dafd2dae..d10b3a57 100644
+--- a/openbsd-compat/crypt_checkpass.c
++++ b/openbsd-compat/crypt_checkpass.c
+@@ -1,5 +1,6 @@
+ /* OPENBSD ORIGINAL: lib/libc/crypt/cryptutil.c */
+
++#include "includes.h"
+ #include <errno.h>
+ #ifdef HAVE_CRYPT_H
+ #include <crypt.h>
+@@ -10,6 +11,8 @@
+ int
+ crypt_checkpass(const char *pass, const char *goodhash)
+ {
++ char *c;
++
+ if (goodhash == NULL)
+ goto fail;
+
+@@ -17,7 +20,11 @@ crypt_checkpass(const char *pass, const char *goodhash)
+ if (strlen(goodhash) == 0 && strlen(pass) == 0)
+ return 0;
+
+- if (strcmp(crypt(pass, goodhash), goodhash) == 0)
++ c = crypt(pass, goodhash);
++ if (c == NULL)
++ goto fail;
++
++ if (strcmp(c, goodhash) == 0)
+ return 0;
+
+ fail:
+
diff --git a/gnu/packages/patches/patch-hurd-path-max.patch b/gnu/packages/patches/patch-hurd-path-max.patch
index 81e37930c2..1845a5803b 100644
--- a/gnu/packages/patches/patch-hurd-path-max.patch
+++ b/gnu/packages/patches/patch-hurd-path-max.patch
@@ -13,7 +13,7 @@ Subject: [PATCH] Do not rely on PATH_MAX when reading a symlink target.
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/util.c b/src/util.c
-index 82a7e37..c4c0f9d 100644
+index 1cc08ba..67dbd3a 100644
--- a/src/util.c
+++ b/src/util.c
@@ -460,12 +460,12 @@ move_file (char const *from, bool *from_needs_removal,
@@ -31,18 +31,19 @@ index 82a7e37..c4c0f9d 100644
size += i;
if (i != 0 || close (fd) != 0)
read_fatal ();
-@@ -610,9 +610,9 @@ copy_file (char const *from, char const *to, struct stat *tost,
+@@ -610,10 +610,10 @@ copy_file (char const *from, char const *to, struct stat *tost,
if (S_ISLNK (mode))
{
-- char *buffer = xmalloc (PATH_MAX);
+- char *buffer = xmalloc (PATH_MAX + 1);
+ char *buffer = xmalloc (tost->st_size + 1);
+ ssize_t r;
-- if (safe_readlink (from, buffer, PATH_MAX) < 0)
-+ if (safe_readlink (from, buffer, tost->st_size) < 0)
+- if ((r = safe_readlink (from, buffer, PATH_MAX)) < 0)
++ if ((r = safe_readlink (from, buffer, tost->st_size)) < 0)
pfatal ("Can't read %s %s", "symbolic link", from);
+ buffer[r] = '\0';
if (safe_symlink (buffer, to) != 0)
- pfatal ("Can't create %s %s", "symbolic link", to);
--
-2.4.2
+2.16.2
diff --git a/gnu/packages/patches/pcre2-CVE-2017-7186.patch b/gnu/packages/patches/pcre2-CVE-2017-7186.patch
deleted file mode 100644
index 5c16955aaa..0000000000
--- a/gnu/packages/patches/pcre2-CVE-2017-7186.patch
+++ /dev/null
@@ -1,68 +0,0 @@
-Patch for <https://nvd.nist.gov/vuln/detail?vulnId=CVE-2017-7186>
-taken from <https://vcs.pcre.org/pcre2?view=revision&revision=670>.
-
---- trunk/src/pcre2_internal.h 2016/11/19 12:46:24 600
-+++ trunk/src/pcre2_internal.h 2017/02/24 18:25:32 670
-@@ -1774,10 +1774,17 @@
- /* UCD access macros */
-
- #define UCD_BLOCK_SIZE 128
--#define GET_UCD(ch) (PRIV(ucd_records) + \
-+#define REAL_GET_UCD(ch) (PRIV(ucd_records) + \
- PRIV(ucd_stage2)[PRIV(ucd_stage1)[(int)(ch) / UCD_BLOCK_SIZE] * \
- UCD_BLOCK_SIZE + (int)(ch) % UCD_BLOCK_SIZE])
-
-+#if PCRE2_CODE_UNIT_WIDTH == 32
-+#define GET_UCD(ch) ((ch > MAX_UTF_CODE_POINT)? \
-+ PRIV(dummy_ucd_record) : REAL_GET_UCD(ch))
-+#else
-+#define GET_UCD(ch) REAL_GET_UCD(ch)
-+#endif
-+
- #define UCD_CHARTYPE(ch) GET_UCD(ch)->chartype
- #define UCD_SCRIPT(ch) GET_UCD(ch)->script
- #define UCD_CATEGORY(ch) PRIV(ucp_gentype)[UCD_CHARTYPE(ch)]
-@@ -1834,6 +1841,9 @@
- #define _pcre2_default_compile_context PCRE2_SUFFIX(_pcre2_default_compile_context_)
- #define _pcre2_default_match_context PCRE2_SUFFIX(_pcre2_default_match_context_)
- #define _pcre2_default_tables PCRE2_SUFFIX(_pcre2_default_tables_)
-+#if PCRE2_CODE_UNIT_WIDTH == 32
-+#define _pcre2_dummy_ucd_record PCRE2_SUFFIX(_pcre2_dummy_ucd_record_)
-+#endif
- #define _pcre2_hspace_list PCRE2_SUFFIX(_pcre2_hspace_list_)
- #define _pcre2_vspace_list PCRE2_SUFFIX(_pcre2_vspace_list_)
- #define _pcre2_ucd_caseless_sets PCRE2_SUFFIX(_pcre2_ucd_caseless_sets_)
-@@ -1858,6 +1868,9 @@
- extern const uint32_t PRIV(vspace_list)[];
- extern const uint32_t PRIV(ucd_caseless_sets)[];
- extern const ucd_record PRIV(ucd_records)[];
-+#if PCRE2_CODE_UNIT_WIDTH == 32
-+extern const ucd_record PRIV(dummy_ucd_record)[];
-+#endif
- extern const uint8_t PRIV(ucd_stage1)[];
- extern const uint16_t PRIV(ucd_stage2)[];
- extern const uint32_t PRIV(ucp_gbtable)[];
-
---- trunk/src/pcre2_ucd.c 2015/07/17 15:44:51 316
-+++ trunk/src/pcre2_ucd.c 2017/02/24 18:25:32 670
-@@ -41,6 +41,20 @@
-
- const char *PRIV(unicode_version) = "8.0.0";
-
-+/* If the 32-bit library is run in non-32-bit mode, character values
-+greater than 0x10ffff may be encountered. For these we set up a
-+special record. */
-+
-+#if PCRE2_CODE_UNIT_WIDTH == 32
-+const ucd_record PRIV(dummy_ucd_record)[] = {{
-+ ucp_Common, /* script */
-+ ucp_Cn, /* type unassigned */
-+ ucp_gbOther, /* grapheme break property */
-+ 0, /* case set */
-+ 0, /* other case */
-+ }};
-+#endif
-+
- /* When recompiling tables with a new Unicode version, please check the
- types in this structure definition from pcre2_internal.h (the actual
- field names will be different):
diff --git a/gnu/packages/patches/pcre2-CVE-2017-8786.patch b/gnu/packages/patches/pcre2-CVE-2017-8786.patch
deleted file mode 100644
index 6071d58f07..0000000000
--- a/gnu/packages/patches/pcre2-CVE-2017-8786.patch
+++ /dev/null
@@ -1,155 +0,0 @@
-Fix CVE-2017-8786:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-8786
-https://bugs.exim.org/show_bug.cgi?id=2079
-https://blogs.gentoo.org/ago/2017/04/29/libpcre-heap-based-buffer-overflow-write-in-pcre2test-c/
-
-Patch copied from upstream source repository:
-
-https://vcs.pcre.org/pcre2?view=revision&revision=696
-https://vcs.pcre.org/pcre2?view=revision&revision=697
-
---- trunk/doc/pcre2api.3 2017/03/21 16:48:40 695
-+++ trunk/doc/pcre2api.3 2017/03/21 17:46:21 696
-@@ -1,4 +1,4 @@
--.TH PCRE2API 3 "24 December 2016" "PCRE2 10.23"
-+.TH PCRE2API 3 "21 March 2017" "PCRE2 10.30"
- .SH NAME
- PCRE2 - Perl-compatible regular expressions (revised API)
- .sp
-@@ -2633,8 +2633,8 @@
- A text message for an error code from any PCRE2 function (compile, match, or
- auxiliary) can be obtained by calling \fBpcre2_get_error_message()\fP. The code
- is passed as the first argument, with the remaining two arguments specifying a
--code unit buffer and its length, into which the text message is placed. Note
--that the message is returned in code units of the appropriate width for the
-+code unit buffer and its length in code units, into which the text message is
-+placed. The message is returned in code units of the appropriate width for the
- library that is being used.
- .P
- The returned message is terminated with a trailing zero, and the function
-@@ -3321,6 +3321,6 @@
- .rs
- .sp
- .nf
--Last updated: 23 December 2016
--Copyright (c) 1997-2016 University of Cambridge.
-+Last updated: 21 March 2017
-+Copyright (c) 1997-2017 University of Cambridge.
- .fi
---- trunk/src/pcre2_error.c 2017/03/21 16:48:40 695
-+++ trunk/src/pcre2_error.c 2017/03/21 17:46:21 696
-@@ -271,7 +271,7 @@
- Arguments:
- enumber error number
- buffer where to put the message (zero terminated)
-- size size of the buffer
-+ size size of the buffer in code units
-
- Returns: length of message if all is well
- negative on error
---- trunk/src/pcre2test.c 2017/03/21 17:46:21 696
-+++ trunk/src/pcre2test.c 2017/03/21 18:36:13 697
-@@ -1017,9 +1017,9 @@
- if (test_mode == PCRE8_MODE) \
- r = pcre2_get_error_message_8(a,G(b,8),G(G(b,8),_size)); \
- else if (test_mode == PCRE16_MODE) \
-- r = pcre2_get_error_message_16(a,G(b,16),G(G(b,16),_size)); \
-+ r = pcre2_get_error_message_16(a,G(b,16),G(G(b,16),_size/2)); \
- else \
-- r = pcre2_get_error_message_32(a,G(b,32),G(G(b,32),_size))
-+ r = pcre2_get_error_message_32(a,G(b,32),G(G(b,32),_size/4))
-
- #define PCRE2_GET_OVECTOR_COUNT(a,b) \
- if (test_mode == PCRE8_MODE) \
-@@ -1399,6 +1399,9 @@
-
- /* ----- Common macros for two-mode cases ----- */
-
-+#define BYTEONE (BITONE/8)
-+#define BYTETWO (BITTWO/8)
-+
- #define CASTFLD(t,a,b) \
- ((test_mode == G(G(PCRE,BITONE),_MODE))? (t)(G(a,BITONE)->b) : \
- (t)(G(a,BITTWO)->b))
-@@ -1481,9 +1484,9 @@
-
- #define PCRE2_GET_ERROR_MESSAGE(r,a,b) \
- if (test_mode == G(G(PCRE,BITONE),_MODE)) \
-- r = G(pcre2_get_error_message_,BITONE)(a,G(b,BITONE),G(G(b,BITONE),_size)); \
-+ r = G(pcre2_get_error_message_,BITONE)(a,G(b,BITONE),G(G(b,BITONE),_size/BYTEONE)); \
- else \
-- r = G(pcre2_get_error_message_,BITTWO)(a,G(b,BITTWO),G(G(b,BITTWO),_size))
-+ r = G(pcre2_get_error_message_,BITTWO)(a,G(b,BITTWO),G(G(b,BITTWO),_size/BYTETWO))
-
- #define PCRE2_GET_OVECTOR_COUNT(a,b) \
- if (test_mode == G(G(PCRE,BITONE),_MODE)) \
-@@ -1904,7 +1907,7 @@
- #define PCRE2_DFA_MATCH(a,b,c,d,e,f,g,h,i,j) \
- a = pcre2_dfa_match_16(G(b,16),(PCRE2_SPTR16)c,d,e,f,G(g,16),h,i,j)
- #define PCRE2_GET_ERROR_MESSAGE(r,a,b) \
-- r = pcre2_get_error_message_16(a,G(b,16),G(G(b,16),_size))
-+ r = pcre2_get_error_message_16(a,G(b,16),G(G(b,16),_size/2))
- #define PCRE2_GET_OVECTOR_COUNT(a,b) a = pcre2_get_ovector_count_16(G(b,16))
- #define PCRE2_GET_STARTCHAR(a,b) a = pcre2_get_startchar_16(G(b,16))
- #define PCRE2_JIT_COMPILE(r,a,b) r = pcre2_jit_compile_16(G(a,16),b)
-@@ -2000,7 +2003,7 @@
- #define PCRE2_DFA_MATCH(a,b,c,d,e,f,g,h,i,j) \
- a = pcre2_dfa_match_32(G(b,32),(PCRE2_SPTR32)c,d,e,f,G(g,32),h,i,j)
- #define PCRE2_GET_ERROR_MESSAGE(r,a,b) \
-- r = pcre2_get_error_message_32(a,G(b,32),G(G(b,32),_size))
-+ r = pcre2_get_error_message_32(a,G(b,32),G(G(b,32),_size/4))
- #define PCRE2_GET_OVECTOR_COUNT(a,b) a = pcre2_get_ovector_count_32(G(b,32))
- #define PCRE2_GET_STARTCHAR(a,b) a = pcre2_get_startchar_32(G(b,32))
- #define PCRE2_JIT_COMPILE(r,a,b) r = pcre2_jit_compile_32(G(a,32),b)
---- trunk/src/pcre2test.c 2017/03/21 16:48:40 695
-+++ trunk/src/pcre2test.c 2017/03/21 17:46:21 696
-@@ -2889,7 +2889,7 @@
- {
- if (pbuffer32 != NULL) free(pbuffer32);
- pbuffer32_size = 4*len + 4;
-- if (pbuffer32_size < 256) pbuffer32_size = 256;
-+ if (pbuffer32_size < 512) pbuffer32_size = 512;
- pbuffer32 = (uint32_t *)malloc(pbuffer32_size);
- if (pbuffer32 == NULL)
- {
-@@ -7600,7 +7600,8 @@
- int errcode;
- char *endptr;
-
--/* Ensure the relevant non-8-bit buffer is available. */
-+/* Ensure the relevant non-8-bit buffer is available. Ensure that it is at
-+least 128 code units, because it is used for retrieving error messages. */
-
- #ifdef SUPPORT_PCRE2_16
- if (test_mode == PCRE16_MODE)
-@@ -7620,7 +7621,7 @@
- #ifdef SUPPORT_PCRE2_32
- if (test_mode == PCRE32_MODE)
- {
-- pbuffer32_size = 256;
-+ pbuffer32_size = 512;
- pbuffer32 = (uint32_t *)malloc(pbuffer32_size);
- if (pbuffer32 == NULL)
- {
---- trunk/testdata/testinput2 2017/03/21 16:48:40 695
-+++ trunk/testdata/testinput2 2017/03/21 17:46:21 696
-@@ -5017,4 +5017,6 @@
-
- /(?<!\1((?U)1((?U))))(*F)/never_backslash_c,alt_bsux,anchored,extended
-
-+/\g{3/
-+
- # End of testinput2
---- trunk/testdata/testoutput2 2017/03/21 16:48:40 695
-+++ trunk/testdata/testoutput2 2017/03/21 17:46:21 696
-@@ -15570,6 +15570,9 @@
-
- /(?<!\1((?U)1((?U))))(*F)/never_backslash_c,alt_bsux,anchored,extended
-
-+/\g{3/
-+Failed: error 157 at offset 2: \g is not followed by a braced, angle-bracketed, or quoted name/number or by a plain number
-+
- # End of testinput2
- Error -63: PCRE2_ERROR_BADDATA (unknown error number)
- Error -62: bad serialized data
diff --git a/gnu/packages/patches/perf-gcc-ice.patch b/gnu/packages/patches/perf-gcc-ice.patch
new file mode 100644
index 0000000000..58ab5359c2
--- /dev/null
+++ b/gnu/packages/patches/perf-gcc-ice.patch
@@ -0,0 +1,13 @@
+Work around this GCC ICE: <https://bugs.gnu.org/31708>.
+
+--- linux-4.16.13/tools/perf/util/header.c 2018-06-04 11:30:39.368146035 +0200
++++ linux-4.16.13/tools/perf/util/header.c 2018-06-04 11:34:04.667212378 +0200
+@@ -135,7 +135,7 @@ int do_write(struct feat_fd *ff, const v
+ int write_padded(struct feat_fd *ff, const void *bf,
+ size_t count, size_t count_aligned)
+ {
+- static const char zero_buf[NAME_ALIGN];
++ static const char zero_buf[NAME_ALIGN] = { 0 };
+ int err = do_write(ff, bf, count);
+
+ if (!err)
diff --git a/gnu/packages/patches/pius.patch b/gnu/packages/patches/pius.patch
new file mode 100644
index 0000000000..da39731d4d
--- /dev/null
+++ b/gnu/packages/patches/pius.patch
@@ -0,0 +1,38 @@
+See https://github.com/jaymzh/pius/pull/96
+
+commit 4dba0bf75ab351969622f7b9c38484657411a528
+Author: Martin Kletzander <nert.pinx+github@gmail.com>
+Date: Thu May 17 17:55:27 2018 +0200
+
+ Don't fail on ENCRYPTION_COMPLIANCE_MODE line from too new GnuPG (#96)
+
+ GnuPG started printing information about encryption compliance in [commit
+ f31dc2540acf](https://dev.gnupg.org/rGf31dc2540acf7cd7f09fd94658e815822222bfcb)
+ and since then signing with pius fails.
+
+ Closes #95
+
+ Signed-off-by: Martin Kletzander <nert.pinx@gmail.com>
+
+diff --git a/libpius/signer.py b/libpius/signer.py
+index 3c7262f..13013bb 100644
+--- a/libpius/signer.py
++++ b/libpius/signer.py
+@@ -45,6 +45,7 @@ class PiusSigner(object):
+ GPG_PINENTRY_LAUNCHED = '[GNUPG:] PINENTRY_LAUNCHED'
+ GPG_KEY_CONSIDERED = '[GNUPG:] KEY_CONSIDERED'
+ GPG_WARN_VERSION = '[GNUPG:] WARNING server_version_mismatch'
++ GPG_ENC_COMPLIANT_MODE = '[GNUPG:] ENCRYPTION_COMPLIANCE_MODE'
+
+ def __init__(self, signer, force_signer, mode, keyring, gpg_path, tmpdir,
+ outdir, encrypt_outfiles, mail, mailer, verbose, sort_keyring,
+@@ -431,6 +432,9 @@ class PiusSigner(object):
+ if PiusSigner.GPG_ENC_BEG in line:
+ debug('Got GPG_ENC_BEG')
+ continue
++ elif PiusSigner.GPG_ENC_COMPLIANT_MODE in line:
++ debug('Got ENCRYPTION_COMPLIANCE_MODE')
++ continue
+ elif PiusSigner.GPG_ENC_END in line:
+ debug('Got GPG_ENC_END')
+ break
diff --git a/gnu/packages/patches/pulseaudio-glibc-2.27.patch b/gnu/packages/patches/pulseaudio-glibc-2.27.patch
new file mode 100644
index 0000000000..79d86abeee
--- /dev/null
+++ b/gnu/packages/patches/pulseaudio-glibc-2.27.patch
@@ -0,0 +1,67 @@
+Copied from:
+https://cgit.freedesktop.org/pulseaudio/pulseaudio/commit/?id=dfb0460fb4743aec047cdf755a660a9ac2d0f3fb
+
+
+From dfb0460fb4743aec047cdf755a660a9ac2d0f3fb Mon Sep 17 00:00:00 2001
+From: Tanu Kaskinen <tanuk@iki.fi>
+Date: Wed, 24 Jan 2018 03:51:49 +0200
+Subject: [PATCH] memfd-wrappers: only define memfd_create() if not already
+ defined
+
+glibc 2.27 is to be released soon, and it will provide memfd_create().
+If glibc provides the function, we must not define it ourselves,
+otherwise building fails due to conflict between the two implementations
+of the same function.
+
+BugLink: https://bugs.freedesktop.org/show_bug.cgi?id=104733
+---
+ configure.ac | 3 +++
+ src/pulsecore/memfd-wrappers.h | 7 ++++---
+ 2 files changed, 7 insertions(+), 3 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index 0084c86e..0eb44b08 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -610,6 +610,9 @@ AS_IF([test "x$enable_memfd" = "xyes" && test "x$HAVE_MEMFD" = "x0"],
+ [AC_MSG_ERROR([*** Your Linux kernel does not support memfd shared memory.
+ *** Use linux v3.17 or higher for such a feature.])])
+
++AS_IF([test "x$HAVE_MEMFD" = "x1"],
++ AC_CHECK_FUNCS([memfd_create]))
++
+ AC_SUBST(HAVE_MEMFD)
+ AM_CONDITIONAL([HAVE_MEMFD], [test "x$HAVE_MEMFD" = x1])
+ AS_IF([test "x$HAVE_MEMFD" = "x1"], AC_DEFINE([HAVE_MEMFD], 1, [Have memfd shared memory.]))
+diff --git a/src/pulsecore/memfd-wrappers.h b/src/pulsecore/memfd-wrappers.h
+index 3bed9b2b..c7aadfd3 100644
+--- a/src/pulsecore/memfd-wrappers.h
++++ b/src/pulsecore/memfd-wrappers.h
+@@ -20,13 +20,14 @@
+ License along with PulseAudio; if not, see <http://www.gnu.org/licenses/>.
+ ***/
+
+-#ifdef HAVE_MEMFD
++#if defined(HAVE_MEMFD) && !defined(HAVE_MEMFD_CREATE)
+
+ #include <sys/syscall.h>
+ #include <fcntl.h>
+
+ /*
+- * No glibc wrappers exist for memfd_create(2), so provide our own.
++ * Before glibc version 2.27 there was no wrapper for memfd_create(2),
++ * so we have to provide our own.
+ *
+ * Also define memfd fcntl sealing macros. While they are already
+ * defined in the kernel header file <linux/fcntl.h>, that file as
+@@ -63,6 +64,6 @@ static inline int memfd_create(const char *name, unsigned int flags) {
+ #define F_SEAL_WRITE 0x0008 /* prevent writes */
+ #endif
+
+-#endif /* HAVE_MEMFD */
++#endif /* HAVE_MEMFD && !HAVE_MEMFD_CREATE */
+
+ #endif
+--
+2.16.2
+
diff --git a/gnu/packages/patches/pycairo-wscript.patch b/gnu/packages/patches/pycairo-wscript.patch
deleted file mode 100644
index c49f0afcb3..0000000000
--- a/gnu/packages/patches/pycairo-wscript.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-Update the wscript to work with waf-1.8.8. Based on:
-http://cgit.freedesktop.org/pycairo/commit/?id=c57cd129407c904f8c2f752a59d0183df7b01a5e
-
-
---- pycairo-1.10.0.orig/wscript 2011-04-18 15:42:29.000000000 +0800
-+++ pycairo-1.10.0/wscript 2015-04-20 13:01:45.383756898 +0800
-@@ -13,18 +13,18 @@
-
- def options(ctx):
- print(' %s/options()' %d)
-- ctx.tool_options('gnu_dirs')
-- ctx.tool_options('compiler_cc')
-- ctx.tool_options('python') # options for disabling pyc or pyo compilation
-+ ctx.load('gnu_dirs')
-+ ctx.load('compiler_c')
-+ ctx.load('python') # options for disabling pyc or pyo compilation
-
-
- def configure(ctx):
- print(' %s/configure()' %d)
-
- env = ctx.env
-- ctx.check_tool('gnu_dirs')
-- ctx.check_tool('compiler_cc')
-- ctx.check_tool('python')
-+ ctx.load('gnu_dirs')
-+ ctx.load('compiler_c')
-+ ctx.load('python')
- ctx.check_python_version((3,1,0))
- ctx.check_python_headers()
- ctx.check_cfg(package='cairo', atleast_version=cairo_version_required,
diff --git a/gnu/packages/patches/python-3-search-paths.patch b/gnu/packages/patches/python-3-search-paths.patch
index 7feddb8e30..73e3f4ccf5 100644
--- a/gnu/packages/patches/python-3-search-paths.patch
+++ b/gnu/packages/patches/python-3-search-paths.patch
@@ -3,17 +3,14 @@ looking for headers and libraries.
--- setup.py 2015-10-07 23:32:58.891329173 +0200
+++ setup.py 2015-10-07 23:46:29.653349924 +0200
-@@ -507,11 +507,8 @@ class PyBuildExt(build_ext):
+@@ -575,8 +575,8 @@
# if a file is found in one of those directories, it can
# be assumed that no additional -I,-L directives are needed.
if not cross_compiling:
-- lib_dirs = self.compiler.library_dirs + [
-- '/lib64', '/usr/lib64',
-- '/lib', '/usr/lib',
-- ]
-- inc_dirs = self.compiler.include_dirs + ['/usr/include']
+- lib_dirs = self.compiler.library_dirs + system_lib_dirs
+- inc_dirs = self.compiler.include_dirs + system_include_dirs
+ lib_dirs = os.getenv('LIBRARY_PATH', '').split(os.pathsep)
+ inc_dirs = os.getenv('C_INCLUDE_PATH', '').split(os.pathsep)
else:
- lib_dirs = self.compiler.library_dirs[:]
- inc_dirs = self.compiler.include_dirs[:]
+ # Add the sysroot paths. 'sysroot' is a compiler option used to
+ # set the logical path of the standard system headers and
diff --git a/gnu/packages/patches/python-statsmodels-fix-tests.patch b/gnu/packages/patches/python-statsmodels-fix-tests.patch
deleted file mode 100644
index f910b4b5a5..0000000000
--- a/gnu/packages/patches/python-statsmodels-fix-tests.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-This drops a test that fails with numpy 1.12.
-
-Upstream bug URL: https://github.com/statsmodels/statsmodels/issues/3541
-
---- a/statsmodels/discrete/tests/test_discrete.py 2017-03-06 15:29:19.947343331 +0000
-+++ b/statsmodels/discrete/tests/test_discrete.py 2017-03-06 15:29:37.759328845 +0000
-@@ -1329,21 +1329,6 @@
- res = mod.fit(start_params=-np.ones(4), method='newton', disp=0)
- assert_(not res.mle_retvals['converged'])
-
--def test_issue_339():
-- # make sure MNLogit summary works for J != K.
-- data = sm.datasets.anes96.load()
-- exog = data.exog
-- # leave out last exog column
-- exog = exog[:,:-1]
-- exog = sm.add_constant(exog, prepend=True)
-- res1 = sm.MNLogit(data.endog, exog).fit(method="newton", disp=0)
-- # strip the header from the test
-- smry = "\n".join(res1.summary().as_text().split('\n')[9:])
-- cur_dir = os.path.dirname(os.path.abspath(__file__))
-- test_case_file = os.path.join(cur_dir, 'results', 'mn_logit_summary.txt')
-- test_case = open(test_case_file, 'r').read()
-- np.testing.assert_equal(smry, test_case[:-1])
--
- def test_issue_341():
- data = sm.datasets.anes96.load()
- exog = data.exog
diff --git a/gnu/packages/patches/qemu-glibc-2.27.patch b/gnu/packages/patches/qemu-glibc-2.27.patch
new file mode 100644
index 0000000000..b1f354ac1c
--- /dev/null
+++ b/gnu/packages/patches/qemu-glibc-2.27.patch
@@ -0,0 +1,55 @@
+From 75e5b70e6b5dcc4f2219992d7cffa462aa406af0 Mon Sep 17 00:00:00 2001
+From: Paolo Bonzini <pbonzini@redhat.com>
+Date: Tue, 28 Nov 2017 11:51:27 +0100
+Subject: [PATCH] memfd: fix configure test
+MIME-Version: 1.0
+Content-Type: text/plain; charset=utf8
+Content-Transfer-Encoding: 8bit
+
+Recent glibc added memfd_create in sys/mman.h. This conflicts with
+the definition in util/memfd.c:
+
+ /builddir/build/BUILD/qemu-2.11.0-rc1/util/memfd.c:40:12: error: static declaration of memfd_create follows non-static declaration
+
+Fix the configure test, and remove the sys/memfd.h inclusion since the
+file actually does not exist---it is a typo in the memfd_create(2) man
+page.
+
+Cc: Marc-André Lureau <marcandre.lureau@redhat.com>
+Signed-off-by: Paolo Bonzini <pbonzini@redhat.com>
+---
+ configure | 2 +-
+ util/memfd.c | 4 +---
+ 2 files changed, 2 insertions(+), 4 deletions(-)
+
+diff --git a/configure b/configure
+index 9c8aa5a..99ccc17 100755
+--- a/configure
++++ b/configure
+@@ -3923,7 +3923,7 @@ fi
+ # check if memfd is supported
+ memfd=no
+ cat > $TMPC << EOF
+-#include <sys/memfd.h>
++#include <sys/mman.h>
+
+ int main(void)
+ {
+diff --git a/util/memfd.c b/util/memfd.c
+index 4571d1a..412e94a 100644
+--- a/util/memfd.c
++++ b/util/memfd.c
+@@ -31,9 +31,7 @@
+
+ #include "qemu/memfd.h"
+
+-#ifdef CONFIG_MEMFD
+-#include <sys/memfd.h>
+-#elif defined CONFIG_LINUX
++#if defined CONFIG_LINUX && !defined CONFIG_MEMFD
+ #include <sys/syscall.h>
+ #include <asm/unistd.h>
+
+--
+1.8.3.1
+
diff --git a/gnu/packages/patches/quassel-qt-5.11.patch b/gnu/packages/patches/quassel-qt-5.11.patch
new file mode 100644
index 0000000000..545f8b7610
--- /dev/null
+++ b/gnu/packages/patches/quassel-qt-5.11.patch
@@ -0,0 +1,72 @@
+https://github.com/quassel/quassel/commit/92f4dca367c3a6f0536a1e0f3fbb44bb6ed4da62.patch
+This can be removed after quassel 0.12.5.
+
+From 92f4dca367c3a6f0536a1e0f3fbb44bb6ed4da62 Mon Sep 17 00:00:00 2001
+From: Manuel Nickschas <sputnick@quassel-irc.org>
+Date: Thu, 3 May 2018 23:19:34 +0200
+Subject: [PATCH] cmake: Fix build with Qt 5.11
+
+Qt 5.11 removes the qt5_use_modules function, so add a copy. If
+present, the Qt-provided function will be used instead.
+
+Closes GH-355.
+---
+ cmake/QuasselMacros.cmake | 38 ++++++++++++++++++++++++++++++++++++++
+ 1 file changed, 38 insertions(+)
+
+diff --git a/cmake/QuasselMacros.cmake b/cmake/QuasselMacros.cmake
+index 652c0042d..d77ba1cfb 100644
+--- a/cmake/QuasselMacros.cmake
++++ b/cmake/QuasselMacros.cmake
+@@ -5,6 +5,9 @@
+ # The qt4_use_modules function was taken from CMake's Qt4Macros.cmake:
+ # (C) 2005-2009 Kitware, Inc.
+ #
++# The qt5_use_modules function was taken from Qt 5.10.1 (and modified):
++# (C) 2005-2011 Kitware, Inc.
++#
+ # Redistribution and use is allowed according to the terms of the BSD license.
+ # For details see the accompanying COPYING-CMAKE-SCRIPTS file.
+
+@@ -43,6 +46,41 @@ function(qt4_use_modules _target _link_type)
+ endforeach()
+ endfunction()
+
++# Qt 5.11 removed the qt5_use_modules function, so we need to provide it until we can switch to a modern CMake version.
++# If present, the Qt-provided version will be used automatically instead.
++function(qt5_use_modules _target _link_type)
++ if (NOT TARGET ${_target})
++ message(FATAL_ERROR "The first argument to qt5_use_modules must be an existing target.")
++ endif()
++ if ("${_link_type}" STREQUAL "LINK_PUBLIC" OR "${_link_type}" STREQUAL "LINK_PRIVATE" )
++ set(_qt5_modules ${ARGN})
++ set(_qt5_link_type ${_link_type})
++ else()
++ set(_qt5_modules ${_link_type} ${ARGN})
++ endif()
++
++ if ("${_qt5_modules}" STREQUAL "")
++ message(FATAL_ERROR "qt5_use_modules requires at least one Qt module to use.")
++ endif()
++ foreach(_module ${_qt5_modules})
++ if (NOT Qt5${_module}_FOUND)
++ find_package(Qt5${_module} PATHS "${_Qt5_COMPONENT_PATH}" NO_DEFAULT_PATH)
++ if (NOT Qt5${_module}_FOUND)
++ message(FATAL_ERROR "Can not use \"${_module}\" module which has not yet been found.")
++ endif()
++ endif()
++ target_link_libraries(${_target} ${_qt5_link_type} ${Qt5${_module}_LIBRARIES})
++ set_property(TARGET ${_target} APPEND PROPERTY INCLUDE_DIRECTORIES ${Qt5${_module}_INCLUDE_DIRS})
++ set_property(TARGET ${_target} APPEND PROPERTY COMPILE_DEFINITIONS ${Qt5${_module}_COMPILE_DEFINITIONS})
++ if (Qt5_POSITION_INDEPENDENT_CODE
++ AND (CMAKE_VERSION VERSION_LESS 2.8.12
++ AND (NOT CMAKE_CXX_COMPILER_ID STREQUAL "GNU"
++ OR CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.0)))
++ set_property(TARGET ${_target} PROPERTY POSITION_INDEPENDENT_CODE ${Qt5_POSITION_INDEPENDENT_CODE})
++ endif()
++ endforeach()
++endfunction()
++
+ # Some wrappers for simplifying dual-Qt support
+
+ function(qt_use_modules)
diff --git a/gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch b/gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch
new file mode 100644
index 0000000000..53c184230a
--- /dev/null
+++ b/gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch
@@ -0,0 +1,28 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 2efc649..8903b52 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -93,7 +95,7 @@
+ find_package(XKB REQUIRED)
+
+ # Qt 5
+-find_package(Qt5 5.6.0 CONFIG REQUIRED Core DBus Gui Qml Quick LinguistTools)
++find_package(Qt5 5.8.0 CONFIG REQUIRED Core DBus Gui Qml Quick LinguistTools Test)
+
+ # find qt5 imports dir
+ get_target_property(QMAKE_EXECUTABLE Qt5::qmake LOCATION)
+diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt
+index c9d935a..bb85ddd 100644
+--- a/test/CMakeLists.txt
++++ b/test/CMakeLists.txt
+@@ -2,9 +2,8 @@
+
+ include_directories(../src/common)
+
+-
+ set(ConfigurationTest_SRCS ConfigurationTest.cpp ../src/common/ConfigReader.cpp)
+ add_executable(ConfigurationTest ${ConfigurationTest_SRCS})
+ add_test(NAME Configuration COMMAND ConfigurationTest)
+
+-qt5_use_modules(ConfigurationTest Test)
++target_link_libraries(ConfigurationTest Qt5::Core Qt5::Test)
diff --git a/gnu/packages/patches/shadow-CVE-2018-7169.patch b/gnu/packages/patches/shadow-CVE-2018-7169.patch
deleted file mode 100644
index eeae5b9b71..0000000000
--- a/gnu/packages/patches/shadow-CVE-2018-7169.patch
+++ /dev/null
@@ -1,191 +0,0 @@
-Fix CVE-2018-7169:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-7169
-
-Patch copied from upstream source repository:
-
-https://github.com/shadow-maint/shadow/commit/fb28c99b8a66ff2605c5cb96abc0a4d975f92de0
-
-From fb28c99b8a66ff2605c5cb96abc0a4d975f92de0 Mon Sep 17 00:00:00 2001
-From: Aleksa Sarai <asarai@suse.de>
-Date: Thu, 15 Feb 2018 23:49:40 +1100
-Subject: [PATCH] newgidmap: enforce setgroups=deny if self-mapping a group
-
-This is necessary to match the kernel-side policy of "self-mapping in a
-user namespace is fine, but you cannot drop groups" -- a policy that was
-created in order to stop user namespaces from allowing trivial privilege
-escalation by dropping supplementary groups that were "blacklisted" from
-certain paths.
-
-This is the simplest fix for the underlying issue, and effectively makes
-it so that unless a user has a valid mapping set in /etc/subgid (which
-only administrators can modify) -- and they are currently trying to use
-that mapping -- then /proc/$pid/setgroups will be set to deny. This
-workaround is only partial, because ideally it should be possible to set
-an "allow_setgroups" or "deny_setgroups" flag in /etc/subgid to allow
-administrators to further restrict newgidmap(1).
-
-We also don't write anything in the "allow" case because "allow" is the
-default, and users may have already written "deny" even if they
-technically are allowed to use setgroups. And we don't write anything if
-the setgroups policy is already "deny".
-
-Ref: https://bugs.launchpad.net/ubuntu/+source/shadow/+bug/1729357
-Fixes: CVE-2018-7169
-Reported-by: Craig Furman <craig.furman89@gmail.com>
-Signed-off-by: Aleksa Sarai <asarai@suse.de>
----
- src/newgidmap.c | 89 +++++++++++++++++++++++++++++++++++++++++++++++++++------
- 1 file changed, 80 insertions(+), 9 deletions(-)
-
-diff --git a/src/newgidmap.c b/src/newgidmap.c
-index b1e33513..59a2e75c 100644
---- a/src/newgidmap.c
-+++ b/src/newgidmap.c
-@@ -46,32 +46,37 @@
- */
- const char *Prog;
-
--static bool verify_range(struct passwd *pw, struct map_range *range)
-+
-+static bool verify_range(struct passwd *pw, struct map_range *range, bool *allow_setgroups)
- {
- /* An empty range is invalid */
- if (range->count == 0)
- return false;
-
-- /* Test /etc/subgid */
-- if (have_sub_gids(pw->pw_name, range->lower, range->count))
-+ /* Test /etc/subgid. If the mapping is valid then we allow setgroups. */
-+ if (have_sub_gids(pw->pw_name, range->lower, range->count)) {
-+ *allow_setgroups = true;
- return true;
-+ }
-
-- /* Allow a process to map its own gid */
-- if ((range->count == 1) && (pw->pw_gid == range->lower))
-+ /* Allow a process to map its own gid. */
-+ if ((range->count == 1) && (pw->pw_gid == range->lower)) {
-+ /* noop -- if setgroups is enabled already we won't disable it. */
- return true;
-+ }
-
- return false;
- }
-
- static void verify_ranges(struct passwd *pw, int ranges,
-- struct map_range *mappings)
-+ struct map_range *mappings, bool *allow_setgroups)
- {
- struct map_range *mapping;
- int idx;
-
- mapping = mappings;
- for (idx = 0; idx < ranges; idx++, mapping++) {
-- if (!verify_range(pw, mapping)) {
-+ if (!verify_range(pw, mapping, allow_setgroups)) {
- fprintf(stderr, _( "%s: gid range [%lu-%lu) -> [%lu-%lu) not allowed\n"),
- Prog,
- mapping->upper,
-@@ -89,6 +94,70 @@ static void usage(void)
- exit(EXIT_FAILURE);
- }
-
-+void write_setgroups(int proc_dir_fd, bool allow_setgroups)
-+{
-+ int setgroups_fd;
-+ char *policy, policy_buffer[4096];
-+
-+ /*
-+ * Default is "deny", and any "allow" will out-rank a "deny". We don't
-+ * forcefully write an "allow" here because the process we are writing
-+ * mappings for may have already set themselves to "deny" (and "allow"
-+ * is the default anyway). So allow_setgroups == true is a noop.
-+ */
-+ policy = "deny\n";
-+ if (allow_setgroups)
-+ return;
-+
-+ setgroups_fd = openat(proc_dir_fd, "setgroups", O_RDWR|O_CLOEXEC);
-+ if (setgroups_fd < 0) {
-+ /*
-+ * If it's an ENOENT then we are on too old a kernel for the setgroups
-+ * code to exist. Emit a warning and bail on this.
-+ */
-+ if (ENOENT == errno) {
-+ fprintf(stderr, _("%s: kernel doesn't support setgroups restrictions\n"), Prog);
-+ goto out;
-+ }
-+ fprintf(stderr, _("%s: couldn't open process setgroups: %s\n"),
-+ Prog,
-+ strerror(errno));
-+ exit(EXIT_FAILURE);
-+ }
-+
-+ /*
-+ * Check whether the policy is already what we want. /proc/self/setgroups
-+ * is write-once, so attempting to write after it's already written to will
-+ * fail.
-+ */
-+ if (read(setgroups_fd, policy_buffer, sizeof(policy_buffer)) < 0) {
-+ fprintf(stderr, _("%s: failed to read setgroups: %s\n"),
-+ Prog,
-+ strerror(errno));
-+ exit(EXIT_FAILURE);
-+ }
-+ if (!strncmp(policy_buffer, policy, strlen(policy)))
-+ goto out;
-+
-+ /* Write the policy. */
-+ if (lseek(setgroups_fd, 0, SEEK_SET) < 0) {
-+ fprintf(stderr, _("%s: failed to seek setgroups: %s\n"),
-+ Prog,
-+ strerror(errno));
-+ exit(EXIT_FAILURE);
-+ }
-+ if (dprintf(setgroups_fd, "%s", policy) < 0) {
-+ fprintf(stderr, _("%s: failed to setgroups %s policy: %s\n"),
-+ Prog,
-+ policy,
-+ strerror(errno));
-+ exit(EXIT_FAILURE);
-+ }
-+
-+out:
-+ close(setgroups_fd);
-+}
-+
- /*
- * newgidmap - Set the gid_map for the specified process
- */
-@@ -103,6 +172,7 @@ int main(int argc, char **argv)
- struct stat st;
- struct passwd *pw;
- int written;
-+ bool allow_setgroups = false;
-
- Prog = Basename (argv[0]);
-
-@@ -145,7 +215,7 @@ int main(int argc, char **argv)
- (unsigned long) getuid ()));
- return EXIT_FAILURE;
- }
--
-+
- /* Get the effective uid and effective gid of the target process */
- if (fstat(proc_dir_fd, &st) < 0) {
- fprintf(stderr, _("%s: Could not stat directory for target %u\n"),
-@@ -177,8 +247,9 @@ int main(int argc, char **argv)
- if (!mappings)
- usage();
-
-- verify_ranges(pw, ranges, mappings);
-+ verify_ranges(pw, ranges, mappings, &allow_setgroups);
-
-+ write_setgroups(proc_dir_fd, allow_setgroups);
- write_mapping(proc_dir_fd, ranges, mappings, "gid_map");
- sub_gid_close();
-
---
-2.16.2
-
diff --git a/gnu/packages/patches/strace-kernel-4.16.patch b/gnu/packages/patches/strace-kernel-4.16.patch
new file mode 100644
index 0000000000..e86d3be439
--- /dev/null
+++ b/gnu/packages/patches/strace-kernel-4.16.patch
@@ -0,0 +1,92 @@
+Fix test failure when using Linux-Libre >= 4.16.
+
+Taken from upstream:
+https://github.com/strace/strace/commit/bcff87c31c0f27c678a43d6b7f67dab363a974fa
+
+From bcff87c31c0f27c678a43d6b7f67dab363a974fa Mon Sep 17 00:00:00 2001
+From: Masatake YAMATO <yamato@redhat.com>
+Date: Wed, 2 May 2018 17:11:07 +0900
+Subject: [PATCH] tests/ioctl_kvm_run.c: handle cpuid at the end of vcpu dentry
+
+Since Linux 4.16, kernel appends the cpuid as suffix to the entry
+for a kvm vcpu in /proc/$pid/fd like:
+
+ anon_inode:kvm-vcpu:0
+
+That was
+
+ anon_inode:kvm-vcpu
+
+This kernel change causes the test case failure on newer kernels.
+Update the test to deal with the new name as well as the old one.
+
+* tests/ioctl_kvm_run.c: Include unistd.h for using readlink(2).
+(vcpu_dev_should_have_cpuid): New function for detecting whether
+a proc entry for given fd has the cpuid suffix or not.
+(main): Trim vcpu_dev to remove the cpuid suffix if needed.
+(vcpu_dev): Remove const modifier.
+---
+ tests/ioctl_kvm_run.c | 29 ++++++++++++++++++++++++++++-
+ 1 file changed, 28 insertions(+), 1 deletion(-)
+
+diff --git a/tests/ioctl_kvm_run.c b/tests/ioctl_kvm_run.c
+index 179461430..e1bef5796 100644
+--- a/tests/ioctl_kvm_run.c
++++ b/tests/ioctl_kvm_run.c
+@@ -40,6 +40,7 @@
+ # include <string.h>
+ # include <sys/ioctl.h>
+ # include <sys/mman.h>
++# include <unistd.h>
+ # include <linux/kvm.h>
+
+ static int
+@@ -56,7 +57,7 @@ kvm_ioctl(int fd, unsigned long cmd, const char *cmd_str, void *arg)
+
+ static const char dev[] = "/dev/kvm";
+ static const char vm_dev[] = "anon_inode:kvm-vm";
+-static const char vcpu_dev[] = "anon_inode:kvm-vcpu";
++static char vcpu_dev[] = "anon_inode:kvm-vcpu:0";
+ static size_t page_size;
+
+ extern const char code[];
+@@ -165,6 +166,23 @@ run_kvm(const int vcpu_fd, struct kvm_run *const run, const size_t mmap_size,
+ }
+ }
+
++static int
++vcpu_dev_should_have_cpuid(int fd)
++{
++ int r = 0;
++ char *filename = NULL;
++ char buf[sizeof(vcpu_dev)];
++
++ if (asprintf(&filename, "/proc/%d/fd/%d", getpid(), fd) < 0)
++ error_msg_and_fail("asprintf");
++
++ if (readlink(filename, buf, sizeof(buf)) == sizeof(buf) - 1
++ && (memcmp(buf, vcpu_dev, sizeof(buf) - 1) == 0))
++ r = 1;
++ free(filename);
++ return r;
++}
++
+ int
+ main(void)
+ {
+@@ -208,6 +226,15 @@ main(void)
+ (unsigned long) page_size, (unsigned long) page_size, mem);
+
+ int vcpu_fd = KVM_IOCTL(vm_fd, KVM_CREATE_VCPU, NULL);
++ if (!vcpu_dev_should_have_cpuid(vcpu_fd))
++ /*
++ * This is an older kernel that doesn't place a cpuid
++ * at the end of the dentry associated with vcpu_fd.
++ * Trim the cpuid part of vcpu_dev like:
++ * "anon_inode:kvm-vcpu:0" -> "anon_inode:kvm-vcpu"
++ */
++ vcpu_dev[strlen (vcpu_dev) - 2] = '\0';
++
+ printf("ioctl(%d<%s>, KVM_CREATE_VCPU, 0) = %d<%s>\n",
+ vm_fd, vm_dev, vcpu_fd, vcpu_dev);
+
diff --git a/gnu/packages/patches/tar-CVE-2016-6321.patch b/gnu/packages/patches/tar-CVE-2016-6321.patch
deleted file mode 100644
index b79be9bc94..0000000000
--- a/gnu/packages/patches/tar-CVE-2016-6321.patch
+++ /dev/null
@@ -1,51 +0,0 @@
-Fix CVE-2016-6321:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-6321
-https://security-tracker.debian.org/tracker/CVE-2016-6321
-
-Patch adapted from upstream source repository (the changes to 'NEWS'
-don't apply to the Tar 1.29 release tarball).
-
-http://git.savannah.gnu.org/cgit/tar.git/commit/?id=7340f67b9860ea0531c1450e5aa261c50f67165d
-
-From 7340f67b9860ea0531c1450e5aa261c50f67165d Mon Sep 17 00:00:00 2001
-From: Paul Eggert <eggert@Penguin.CS.UCLA.EDU>
-Date: Sat, 29 Oct 2016 21:04:40 -0700
-Subject: [PATCH] When extracting, skip ".." members
-
-* NEWS: Document this.
-* src/extract.c (extract_archive): Skip members whose names
-contain "..".
----
- NEWS | 8 +++++++-
- src/extract.c | 8 ++++++++
- 2 files changed, 15 insertions(+), 1 deletion(-)
-
-diff --git a/src/extract.c b/src/extract.c
-index f982433..7904148 100644
---- a/src/extract.c
-+++ b/src/extract.c
-@@ -1629,12 +1629,20 @@ extract_archive (void)
- {
- char typeflag;
- tar_extractor_t fun;
-+ bool skip_dotdot_name;
-
- fatal_exit_hook = extract_finish;
-
- set_next_block_after (current_header);
-
-+ skip_dotdot_name = (!absolute_names_option
-+ && contains_dot_dot (current_stat_info.orig_file_name));
-+ if (skip_dotdot_name)
-+ ERROR ((0, 0, _("%s: Member name contains '..'"),
-+ quotearg_colon (current_stat_info.orig_file_name)));
-+
- if (!current_stat_info.file_name[0]
-+ || skip_dotdot_name
- || (interactive_option
- && !confirm ("extract", current_stat_info.file_name)))
- {
---
-2.11.0
-
diff --git a/gnu/packages/patches/tar-remove-wholesparse-check.patch b/gnu/packages/patches/tar-remove-wholesparse-check.patch
new file mode 100644
index 0000000000..41f53e86aa
--- /dev/null
+++ b/gnu/packages/patches/tar-remove-wholesparse-check.patch
@@ -0,0 +1,68 @@
+This patch is needed in order to build Guix on a Btrfs file system.
+
+
+From da922703282b0d3b8837a99a9c7fdd32f1d20d49 Mon Sep 17 00:00:00 2001
+From: Mark H Weaver <mhw@netris.org>
+Date: Tue, 9 Jan 2018 20:16:14 -0500
+Subject: [PATCH] Remove nonportable check for files containing only zeroes.
+
+This check benefitted only one unlikely case (large files containing
+only zeroes, on systems that do not support SEEK_HOLE) and was based
+on an assumption about file system behavior that is not mandated by
+POSIX and no longer holds in practice, namely that for sufficiently
+large files, (st_blocks == 0) implies that the file contains only
+zeroes. Examples of file systems that violate this assumption include
+Linux's /proc file system and Btrfs.
+
+* src/sparse.c (sparse_scan_file_wholesparse): Remove this function.
+(sparse_scan_file_seek): Remove the initial check for files containing
+only zeroes.
+---
+ src/sparse.c | 24 ------------------------
+ 1 file changed, 24 deletions(-)
+
+diff --git a/src/sparse.c b/src/sparse.c
+index d41c0ea..3de6560 100644
+--- a/src/sparse.c
++++ b/src/sparse.c
+@@ -261,26 +261,6 @@ sparse_scan_file_raw (struct tar_sparse_file *file)
+ return tar_sparse_scan (file, scan_end, NULL);
+ }
+
+-static bool
+-sparse_scan_file_wholesparse (struct tar_sparse_file *file)
+-{
+- struct tar_stat_info *st = file->stat_info;
+- struct sp_array sp = {0, 0};
+-
+- /* Note that this function is called only for truly sparse files of size >= 1
+- block size (checked via ST_IS_SPARSE before). See the thread
+- http://www.mail-archive.com/bug-tar@gnu.org/msg04209.html for more info */
+- if (ST_NBLOCKS (st->stat) == 0)
+- {
+- st->archive_file_size = 0;
+- sp.offset = st->stat.st_size;
+- sparse_add_map (st, &sp);
+- return true;
+- }
+-
+- return false;
+-}
+-
+ #ifdef SEEK_HOLE
+ /* Try to engage SEEK_HOLE/SEEK_DATA feature. */
+ static bool
+@@ -343,10 +323,6 @@ sparse_scan_file_seek (struct tar_sparse_file *file)
+ static bool
+ sparse_scan_file (struct tar_sparse_file *file)
+ {
+- /* always check for completely sparse files */
+- if (sparse_scan_file_wholesparse (file))
+- return true;
+-
+ switch (hole_detection)
+ {
+ case HOLE_DETECTION_DEFAULT:
+--
+2.15.1
+
diff --git a/gnu/packages/patches/util-linux-CVE-2018-7738.patch b/gnu/packages/patches/util-linux-CVE-2018-7738.patch
deleted file mode 100644
index 080e2f56ba..0000000000
--- a/gnu/packages/patches/util-linux-CVE-2018-7738.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-Fix CVE-2018-7738:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-7738
-
-Patch copied from upstream source repository:
-
-https://github.com/karelzak/util-linux/commit/75f03badd7ed9f1dd951863d75e756883d3acc55
-
-From 75f03badd7ed9f1dd951863d75e756883d3acc55 Mon Sep 17 00:00:00 2001
-From: Karel Zak <kzak@redhat.com>
-Date: Thu, 16 Nov 2017 16:27:32 +0100
-Subject: [PATCH] bash-completion: (umount) use findmnt, escape a space in
- paths
-
- # mount /dev/sdc1 /mnt/test/foo\ bar
- # umount <tab>
-
-has to return "/mnt/test/foo\ bar".
-
-Changes:
-
- * don't use mount | awk output, we have findmnt
- * force compgen use \n as entries separator
-
-Addresses: https://github.com/karelzak/util-linux/issues/539
-Signed-off-by: Karel Zak <kzak@redhat.com>
----
- bash-completion/umount | 9 +++++----
- 1 file changed, 5 insertions(+), 4 deletions(-)
-
-diff --git a/bash-completion/umount b/bash-completion/umount
-index d76cb9fff..98c90d61a 100644
---- a/bash-completion/umount
-+++ b/bash-completion/umount
-@@ -40,9 +40,10 @@ _umount_module()
- return 0
- ;;
- esac
-- local DEVS_MPOINTS
-- DEVS_MPOINTS="$(mount | awk '{print $1, $3}')"
-- COMPREPLY=( $(compgen -W "$DEVS_MPOINTS" -- $cur) )
-- return 0
-+
-+ local oldifs=$IFS
-+ IFS=$'\n'
-+ COMPREPLY=( $( compgen -W '$(findmnt -lno TARGET | sed "s/\([[:blank:]]\)/\\\\\1/g")' -- "$cur" ) )
-+ IFS=$oldifs
- }
- complete -F _umount_module umount
diff --git a/gnu/packages/patches/util-linux-tests.patch b/gnu/packages/patches/util-linux-tests.patch
index f436299b7f..bb5be66515 100644
--- a/gnu/packages/patches/util-linux-tests.patch
+++ b/gnu/packages/patches/util-linux-tests.patch
@@ -5,14 +5,14 @@ using 'getpwnam' in libmount. This doesn't work in the chroot because
--- util-linux-2.25.2/tests/ts/libmount/optstr 2015-01-23 13:58:41.181151194 +0100
+++ util-linux-2.25.2/tests/ts/libmount/optstr 2015-01-23 13:58:42.829161716 +0100
-@@ -84,10 +84,6 @@ ts_init_subtest "apply-user" # add user,
- ts_valgrind $TESTPROG --apply --user "noexec,nosuid,loop=/dev/looop0" 0x408 &> $TS_OUTPUT
+@@ -108,10 +108,6 @@
+ ts_run $TESTPROG --apply --user "noexec,nosuid,loop=/dev/looop0" 0x408 &> $TS_OUTPUT
ts_finalize_subtest
-ts_init_subtest "fix"
--ts_valgrind $TESTPROG --fix "uid=root,gid=root" &> $TS_OUTPUT
+-ts_run $TESTPROG --fix "uid=root,gid=root" &> $TS_OUTPUT
-ts_finalize_subtest
-
ts_init_subtest "deduplicate"
- ts_valgrind $TESTPROG --dedup bbb,ccc,AAA,xxx,AAA=a,AAA=bbb,ddd,AAA=ccc,fff=eee AAA &> $TS_OUTPUT
+ ts_run $TESTPROG --dedup bbb,ccc,AAA,xxx,AAA=a,AAA=bbb,ddd,AAA=ccc,fff=eee AAA &> $TS_OUTPUT
ts_finalize_subtest
diff --git a/gnu/packages/patches/xcb-proto-python3-print.patch b/gnu/packages/patches/xcb-proto-python3-print.patch
deleted file mode 100644
index 7d5dc9bc27..0000000000
--- a/gnu/packages/patches/xcb-proto-python3-print.patch
+++ /dev/null
@@ -1,75 +0,0 @@
-Patch copied from upstream source repository:
-
-https://cgit.freedesktop.org/xcb/proto/commit/?id=bea5e1c85bdc0950913790364e18228f20395a3d
-
-From bea5e1c85bdc0950913790364e18228f20395a3d Mon Sep 17 00:00:00 2001
-From: Thomas Klausner <wiz@NetBSD.org>
-Date: Thu, 19 May 2016 17:30:05 +0200
-Subject: [PATCH] print() is a function and needs parentheses.
-
-Fixes build with python-3.x.
-
-Signed-off-by: Thomas Klausner <wiz@NetBSD.org>
-Signed-off-by: Uli Schlachter <psychon@znc.in>
----
- xcbgen/xtypes.py | 12 ++++++------
- 1 file changed, 6 insertions(+), 6 deletions(-)
-
-diff --git a/xcbgen/xtypes.py b/xcbgen/xtypes.py
-index c3b5758..b83b119 100644
---- a/xcbgen/xtypes.py
-+++ b/xcbgen/xtypes.py
-@@ -501,7 +501,7 @@ class ComplexType(Type):
- int(required_start_align_element.get('align', "4"), 0),
- int(required_start_align_element.get('offset', "0"), 0))
- if verbose_align_log:
-- print "Explicit start-align for %s: %s\n" % (self, self.required_start_align)
-+ print ("Explicit start-align for %s: %s\n" % (self, self.required_start_align))
-
- def resolve(self, module):
- if self.resolved:
-@@ -592,7 +592,7 @@ class ComplexType(Type):
- if verbose_align_log:
- print ("calc_required_start_align: %s has start-align %s"
- % (str(self), str(self.required_start_align)))
-- print "Details:\n" + str(log)
-+ print ("Details:\n" + str(log))
- if self.required_start_align.offset != 0:
- print (("WARNING: %s\n\thas start-align with non-zero offset: %s"
- + "\n\tsuggest to add explicit definition with:"
-@@ -619,12 +619,12 @@ class ComplexType(Type):
- for offset in range(0,align):
- align_candidate = Alignment(align, offset)
- if verbose_align_log:
-- print "trying %s for %s" % (str(align_candidate), str(self))
-+ print ("trying %s for %s" % (str(align_candidate), str(self)))
- my_log = AlignmentLog()
- if self.is_possible_start_align(align_candidate, callstack, my_log):
- log.append(my_log)
- if verbose_align_log:
-- print "found start-align %s for %s" % (str(align_candidate), str(self))
-+ print ("found start-align %s for %s" % (str(align_candidate), str(self)))
- return align_candidate
- else:
- my_ok_count = my_log.ok_count()
-@@ -641,7 +641,7 @@ class ComplexType(Type):
- # none of the candidates applies
- # this type has illegal internal aligns for all possible start_aligns
- if verbose_align_log:
-- print "didn't find start-align for %s" % str(self)
-+ print ("didn't find start-align for %s" % str(self))
- log.append(best_log)
- return None
-
-@@ -900,7 +900,7 @@ class SwitchType(ComplexType):
- # aux function for unchecked_get_alignment_after
- def get_align_for_selected_case_field(self, case_field, start_align, callstack, log):
- if verbose_align_log:
-- print "get_align_for_selected_case_field: %s, case_field = %s" % (str(self), str(case_field))
-+ print ("get_align_for_selected_case_field: %s, case_field = %s" % (str(self), str(case_field)))
- total_align = start_align
- for field in self.bitcases:
- my_callstack = callstack[:]
---
-2.11.1
-
diff --git a/gnu/packages/patches/xcb-proto-python3-whitespace.patch b/gnu/packages/patches/xcb-proto-python3-whitespace.patch
deleted file mode 100644
index f0509138b2..0000000000
--- a/gnu/packages/patches/xcb-proto-python3-whitespace.patch
+++ /dev/null
@@ -1,217 +0,0 @@
-Fixes compatibility issue with python > 3.5.
-
-Patch copied from upstream source repository:
-
-https://cgit.freedesktop.org/xcb/proto/commit/?id=ea7a3ac6c658164690e0febb55f4467cb9e0bcac
-
-From ea7a3ac6c658164690e0febb55f4467cb9e0bcac Mon Sep 17 00:00:00 2001
-From: Thomas Klausner <wiz@NetBSD.org>
-Date: Thu, 19 May 2016 17:30:04 +0200
-Subject: [PATCH] Make whitespace use consistent.
-
-At least python-3.5.x complains about this forcefully.
-
-Signed-off-by: Thomas Klausner <wiz@NetBSD.org>
-Signed-off-by: Uli Schlachter <psychon@znc.in>
----
- xcbgen/align.py | 96 ++++++++++++++++++++++++++++-----------------------------
- 1 file changed, 48 insertions(+), 48 deletions(-)
-
-diff --git a/xcbgen/align.py b/xcbgen/align.py
-index 5e31838..d4c12ee 100644
---- a/xcbgen/align.py
-+++ b/xcbgen/align.py
-@@ -16,12 +16,12 @@ class Alignment(object):
- return self.align == other.align and self.offset == other.offset
-
- def __str__(self):
-- return "(align=%d, offset=%d)" % (self.align, self.offset)
-+ return "(align=%d, offset=%d)" % (self.align, self.offset)
-
- @staticmethod
- def for_primitive_type(size):
-- # compute the required start_alignment based on the size of the type
-- if size % 8 == 0:
-+ # compute the required start_alignment based on the size of the type
-+ if size % 8 == 0:
- # do 8-byte primitives require 8-byte alignment in X11?
- return Alignment(8,0)
- elif size % 4 == 0:
-@@ -33,7 +33,7 @@ class Alignment(object):
-
-
- def align_after_fixed_size(self, size):
-- new_offset = (self.offset + size) % self.align
-+ new_offset = (self.offset + size) % self.align
- return Alignment(self.align, new_offset)
-
-
-@@ -41,7 +41,7 @@ class Alignment(object):
- '''
- Assuming the given external_align, checks whether
- self is fulfilled for all cases.
-- Returns True if yes, False otherwise.
-+ Returns True if yes, False otherwise.
- '''
- if self.align == 1 and self.offset == 0:
- # alignment 1 with offset 0 is always fulfilled
-@@ -55,9 +55,9 @@ class Alignment(object):
- # the external align guarantees less alignment -> not guaranteed
- return False
-
-- if external_align.align % self.align != 0:
-+ if external_align.align % self.align != 0:
- # the external align cannot be divided by our align
-- # -> not guaranteed
-+ # -> not guaranteed
- # (this can only happen if there are alignments that are not
- # a power of 2, which is highly discouraged. But better be
- # safe and check for it)
-@@ -72,7 +72,7 @@ class Alignment(object):
-
- def combine_with(self, other):
- # returns the alignment that is guaranteed when
-- # both, self or other, can happen
-+ # both, self or other, can happen
- new_align = gcd(self.align, other.align)
- new_offset_candidate1 = self.offset % new_align
- new_offset_candidate2 = other.offset % new_align
-@@ -83,8 +83,8 @@ class Alignment(object):
- new_align = gcd(new_align, offset_diff)
- new_offset_candidate1 = self.offset % new_align
- new_offset_candidate2 = other.offset % new_align
-- assert new_offset_candidate1 == new_offset_candidate2
-- new_offset = new_offset_candidate1
-+ assert new_offset_candidate1 == new_offset_candidate2
-+ new_offset = new_offset_candidate1
- # return the result
- return Alignment(new_align, new_offset)
-
-@@ -92,44 +92,44 @@ class Alignment(object):
- class AlignmentLog(object):
-
- def __init__(self):
-- self.ok_list = []
-- self.fail_list = []
-- self.verbosity = 1
-+ self.ok_list = []
-+ self.fail_list = []
-+ self.verbosity = 1
-
- def __str__(self):
-- result = ""
-+ result = ""
-
-- # output the OK-list
-- for (align_before, field_name, type_obj, callstack, align_after) in self.ok_list:
-- stacksize = len(callstack)
-+ # output the OK-list
-+ for (align_before, field_name, type_obj, callstack, align_after) in self.ok_list:
-+ stacksize = len(callstack)
- indent = ' ' * stacksize
-- if self.ok_callstack_is_relevant(callstack):
-+ if self.ok_callstack_is_relevant(callstack):
- if field_name is None or field_name == "":
-- result += (" %sok: %s:\n\t%sbefore: %s, after: %s\n"
-- % (indent, str(type_obj), indent, str(align_before), str(align_after)))
-- else:
-- result += (" %sok: field \"%s\" in %s:\n\t%sbefore: %s, after: %s\n"
-- % (indent, str(field_name), str(type_obj),
-- indent, str(align_before), str(align_after)))
-+ result += (" %sok: %s:\n\t%sbefore: %s, after: %s\n"
-+ % (indent, str(type_obj), indent, str(align_before), str(align_after)))
-+ else:
-+ result += (" %sok: field \"%s\" in %s:\n\t%sbefore: %s, after: %s\n"
-+ % (indent, str(field_name), str(type_obj),
-+ indent, str(align_before), str(align_after)))
- if self.verbosity >= 1:
-- result += self.callstack_to_str(indent, callstack)
-+ result += self.callstack_to_str(indent, callstack)
-
-- # output the fail-list
-- for (align_before, field_name, type_obj, callstack, reason) in self.fail_list:
-- stacksize = len(callstack)
-+ # output the fail-list
-+ for (align_before, field_name, type_obj, callstack, reason) in self.fail_list:
-+ stacksize = len(callstack)
- indent = ' ' * stacksize
-- if field_name is None or field_name == "":
-- result += (" %sfail: align %s is incompatible with\n\t%s%s\n\t%sReason: %s\n"
-- % (indent, str(align_before), indent, str(type_obj), indent, reason))
-- else:
-- result += (" %sfail: align %s is incompatible with\n\t%sfield \"%s\" in %s\n\t%sReason: %s\n"
-- % (indent, str(align_before), indent, str(field_name), str(type_obj), indent, reason))
-+ if field_name is None or field_name == "":
-+ result += (" %sfail: align %s is incompatible with\n\t%s%s\n\t%sReason: %s\n"
-+ % (indent, str(align_before), indent, str(type_obj), indent, reason))
-+ else:
-+ result += (" %sfail: align %s is incompatible with\n\t%sfield \"%s\" in %s\n\t%sReason: %s\n"
-+ % (indent, str(align_before), indent, str(field_name), str(type_obj), indent, reason))
-
- if self.verbosity >= 1:
-- result += self.callstack_to_str(indent, callstack)
-+ result += self.callstack_to_str(indent, callstack)
-
-
-- return result
-+ return result
-
-
- def callstack_to_str(self, indent, callstack):
-@@ -137,41 +137,41 @@ class AlignmentLog(object):
- for stack_elem in callstack:
- result += "\t %s%s\n" % (indent, str(stack_elem))
- result += "\t%s]\n" % indent
-- return result
-+ return result
-
-
- def ok_callstack_is_relevant(self, ok_callstack):
- # determine whether an ok callstack is relevant for logging
-- if self.verbosity >= 2:
-- return True
-+ if self.verbosity >= 2:
-+ return True
-
- # empty callstacks are always relevant
-- if len(ok_callstack) == 0:
-+ if len(ok_callstack) == 0:
- return True
-
-- # check whether the ok_callstack is a subset or equal to a fail_callstack
-+ # check whether the ok_callstack is a subset or equal to a fail_callstack
- for (align_before, field_name, type_obj, fail_callstack, reason) in self.fail_list:
- if len(ok_callstack) <= len(fail_callstack):
- zipped = zip(ok_callstack, fail_callstack[:len(ok_callstack)])
-- is_subset = all([i == j for i, j in zipped])
-- if is_subset:
-+ is_subset = all([i == j for i, j in zipped])
-+ if is_subset:
- return True
-
- return False
-
-
- def ok(self, align_before, field_name, type_obj, callstack, align_after):
-- self.ok_list.append((align_before, field_name, type_obj, callstack, align_after))
-+ self.ok_list.append((align_before, field_name, type_obj, callstack, align_after))
-
- def fail(self, align_before, field_name, type_obj, callstack, reason):
-- self.fail_list.append((align_before, field_name, type_obj, callstack, reason))
-+ self.fail_list.append((align_before, field_name, type_obj, callstack, reason))
-
- def append(self, other):
-- self.ok_list.extend(other.ok_list)
-- self.fail_list.extend(other.fail_list)
-+ self.ok_list.extend(other.ok_list)
-+ self.fail_list.extend(other.fail_list)
-
- def ok_count(self):
-- return len(self.ok_list)
-+ return len(self.ok_list)
-
-
-
---
-2.11.1
-