gnu: metabat: Update to 2.15.

* gnu/packages/bioinformatics.scm (metabat): Update to 2.15.
[source]: Remove patch.
[build-system]: Use cmake-build-system.
[arguments]: Adjust to new build system.
* gnu/packages/patches/metabat-fix-compilation.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

1 files changed, 0 insertions, 39 deletions

diff --git a/gnu/packages/patches/metabat-fix-compilation.patch b/gnu/packages/patches/metabat-fix-compilation.patch
deleted file mode 100644
index 7086a96e86..0000000000
--- a/gnu/packages/patches/metabat-fix-compilation.patch
+++ /dev/null
@@ -1,39 +0,0 @@
-This patch changes metabat so that (1) it is not build statically, (2) it uses
-shared libraries rather than static libraries where possible.
-
-diff --git a/SConstruct b/SConstruct
-index 69cdc0a..ac99bcb 100644
---- a/SConstruct
-+++ b/SConstruct
-@@ -26,8 +26,6 @@ debug = ARGUMENTS.get('DEBUG', None)
- build_flags = ['-Wall', '-g', '-std=c++11', '-fopenmp']
- link_flags = ['-lstdc++', '-lm', '-fopenmp']
- 
--if platform.platform(True, True).find('Darwin') == -1:
--    link_flags.extend(['-static', '-static-libgcc', '-static-libstdc++'])
- 
- if debug is None:
-     build_flags.extend(['-O3', '-DNDEBUG', '-Wno-unknown-pragmas', '-Wno-deprecated-declarations', '-Wno-overflow', '-Wno-unused-variable'])
-@@ -110,17 +108,17 @@ def findStaticOrShared( lib, testPaths, static_source_list, link_flag_list, stat
-     for path in testPaths:
-         if not os.path.isdir(path):
-             continue
-+        for testfile in ('%s/lib%s.so' % (path, lib), '%s/lib%s.dylib' % (path, lib)):
-+            if os.path.isfile(testfile):
-+                print "Found shared library %s as %s" % (lib, testfile)
-+                link_flag_list.extend( ["-L%s" % (path), "-l%s" % (lib) ] )
-+                return
-         for suffix in staticSuffixes:
-             testfile = '%s/lib%s%s' % (path, lib, suffix)
-             if os.path.isfile(testfile):
-                 static_source_list.append(testfile)
-                 print "Found static library %s as %s" % (lib, testfile)
-                 return
--        for testfile in ('%s/lib%s.so' % (path, lib), '%s/lib%s.dylib' % (path, lib)):
--            if os.path.isfile(testfile):
--                print "Found shared library %s as %s" % (lib, testfile)
--                link_flag_list.extend( ["-L%s" % (path), "-l%s" % (lib) ] )
--                return
-     print "Could not find library for %s!!! Looked in %s" % (lib, testPaths)
-     return
-