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author | Eric Bavier <bavier@cray.com> | 2018-10-24 12:39:11 -0500 |
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committer | Eric Bavier <bavier@member.fsf.org> | 2019-01-25 13:10:05 -0600 |
commit | fd3733432b531c7e4ef34f06c896bd27fcafb2f9 (patch) | |
tree | 74c6ace2c4aef74269b30f59c5f67e10681ecce0 /gnu/packages/patches | |
parent | a6b9ebc2fc92a72ca8a1e61e2d321804eec9d738 (diff) | |
download | guix-fd3733432b531c7e4ef34f06c896bd27fcafb2f9.tar guix-fd3733432b531c7e4ef34f06c896bd27fcafb2f9.tar.gz |
scotch: Upgrade to 6.0.6.
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
Diffstat (limited to 'gnu/packages/patches')
-rw-r--r-- | gnu/packages/patches/scotch-graph-diam-64.patch | 27 | ||||
-rw-r--r-- | gnu/packages/patches/scotch-graph-induce-type-64.patch | 19 | ||||
-rw-r--r-- | gnu/packages/patches/scotch-integer-declarations.patch | 37 | ||||
-rw-r--r-- | gnu/packages/patches/scotch-test-threading.patch | 22 |
4 files changed, 37 insertions, 68 deletions
diff --git a/gnu/packages/patches/scotch-graph-diam-64.patch b/gnu/packages/patches/scotch-graph-diam-64.patch deleted file mode 100644 index 2ae31e3c3b..0000000000 --- a/gnu/packages/patches/scotch-graph-diam-64.patch +++ /dev/null @@ -1,27 +0,0 @@ -Fixes test_scotch_graph_diam test with -DINTSIZE64. - -Reported upstream at -https://gforge.inria.fr/tracker/index.php?func=detail&aid=21650&group_id=248&atid=1081 - ---- scotch-6.0.5a/src/libscotch/library.h -+++ scotch-6.0.5a/src/libscotch/library.h -@@ -187,6 +187,7 @@ SCOTCH_Num SCOTCH_graphBase (SCOTCH_Graph * const, const SCO - int SCOTCH_graphCheck (const SCOTCH_Graph * const); - void SCOTCH_graphSize (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const); - void SCOTCH_graphData (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const); -+SCOTCH_Num SCOTCH_graphDiamPV (SCOTCH_Graph * const); - void SCOTCH_graphStat (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const); - int SCOTCH_graphCoarsen (const SCOTCH_Graph * const, const SCOTCH_Num, const double, const SCOTCH_Num, SCOTCH_Graph * const, SCOTCH_Num * const); - int SCOTCH_graphCoarsenMatch (const SCOTCH_Graph * const, SCOTCH_Num * const, const double, const SCOTCH_Num, SCOTCH_Num * const); ---- scotch-6.0.5a/src/libscotch/library_graph_diam.c -+++ scotch-6.0.5a/src/libscotch/library_graph_diam.c -@@ -72,8 +72,7 @@ - - SCOTCH_Num - SCOTCH_graphDiamPV ( --SCOTCH_Graph * const grafptr, --const SCOTCH_Num baseval) -+SCOTCH_Graph * const grafptr) - { - return ((SCOTCH_Num) graphDiamPV ((Graph * const) grafptr)); - } diff --git a/gnu/packages/patches/scotch-graph-induce-type-64.patch b/gnu/packages/patches/scotch-graph-induce-type-64.patch deleted file mode 100644 index d2eee52a7b..0000000000 --- a/gnu/packages/patches/scotch-graph-induce-type-64.patch +++ /dev/null @@ -1,19 +0,0 @@ -Fixes return type of SCOTCH_graphInduceList and SCOTCH_graphInducePart -so that the definition matches with -DINTSIZE64. - -Reported upstream at -https://gforge.inria.fr/tracker/index.php?func=detail&aid=21608&group_id=248&atid=1081 - ---- scotch_6.0.5a/src/libscotch/library.h.orig 2018-02-11 10:52:38.000000000 -0600 -+++ scotch_6.0.5a/src/libscotch/library.h 2018-02-23 16:56:41.000000000 -0600 -@@ -199,8 +199,8 @@ - int SCOTCH_graphGeomSaveChac (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); - int SCOTCH_graphGeomSaveMmkt (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); - int SCOTCH_graphGeomSaveScot (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); --int SCOTCH_graphInduceList (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Graph * const); --int SCOTCH_graphInducePart (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_GraphPart2 * const, const SCOTCH_GraphPart2, SCOTCH_Graph * const); -+SCOTCH_Num SCOTCH_graphInduceList (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Graph * const); -+SCOTCH_Num SCOTCH_graphInducePart (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_GraphPart2 * const, const SCOTCH_GraphPart2, SCOTCH_Graph * const); - - int SCOTCH_graphMapInit (const SCOTCH_Graph * const, SCOTCH_Mapping * const, const SCOTCH_Arch * const, SCOTCH_Num * const); - void SCOTCH_graphMapExit (const SCOTCH_Graph * const, SCOTCH_Mapping * const); diff --git a/gnu/packages/patches/scotch-integer-declarations.patch b/gnu/packages/patches/scotch-integer-declarations.patch new file mode 100644 index 0000000000..978625c1c0 --- /dev/null +++ b/gnu/packages/patches/scotch-integer-declarations.patch @@ -0,0 +1,37 @@ +diff --git a/src/libscotch/library.h b/src/libscotch/library.h +index 1891c19..ecc0533 100644 +--- a/src/libscotch/library.h ++++ b/src/libscotch/library.h +@@ -67,6 +67,8 @@ + + /*+ Integer type. +*/ + ++#include <stdint.h> ++ + typedef DUMMYIDX SCOTCH_Idx; + + typedef DUMMYINT SCOTCH_Num; +diff --git a/src/libscotchmetis/library_metis.h b/src/libscotchmetis/library_metis.h +index e6767e1..04e71c3 100644 +--- a/src/libscotchmetis/library_metis.h ++++ b/src/libscotchmetis/library_metis.h +@@ -99,6 +99,7 @@ typedef enum { + */ + + #ifndef SCOTCH_H /* In case "scotch.h" not included before */ ++#include <stdint.h> + typedef DUMMYINT SCOTCH_Num; + #endif /* SCOTCH_H */ + +diff --git a/src/libscotchmetis/library_parmetis.h b/src/libscotchmetis/library_parmetis.h +index 6d2f0b0..3c803fc 100644 +--- a/src/libscotchmetis/library_parmetis.h ++++ b/src/libscotchmetis/library_parmetis.h +@@ -106,6 +106,7 @@ typedef enum { + */ + + #ifndef SCOTCH_H /* In case "scotch.h" not included before */ ++#include <stdint.h> + typedef DUMMYINT SCOTCH_Num; + #endif /* SCOTCH_H */ + diff --git a/gnu/packages/patches/scotch-test-threading.patch b/gnu/packages/patches/scotch-test-threading.patch deleted file mode 100644 index de8cc49c41..0000000000 --- a/gnu/packages/patches/scotch-test-threading.patch +++ /dev/null @@ -1,22 +0,0 @@ -Fix this test so that it succeeds when the library is not compiled with -SCOTCH_PTHREAD. - ---- scotch_6.0.4/src/check/test_common_thread.c 2014-09-28 11:39:59.000000000 -0500 -+++ scotch_6.0.4/src/check/test_common_thread.c 2015-01-10 00:52:00.076229542 -0600 -@@ -175,14 +175,14 @@ - char * argv[]) - { - TestThreadGroup groudat; --#if ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) -+#if ((defined COMMON_PTHREAD) && (defined SCOTCH_PTHREAD)) - TestThread * restrict thrdtab; - int thrdnbr; - #endif /* ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) */ - - SCOTCH_errorProg (argv[0]); - --#if ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) -+#if ((defined COMMON_PTHREAD) && (defined SCOTCH_PTHREAD)) - thrdnbr = SCOTCH_PTHREAD_NUMBER; - - groudat.redusum = COMPVAL (thrdnbr); |