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authorMark H Weaver <mhw@netris.org>2017-08-06 00:23:20 -0400
committerMark H Weaver <mhw@netris.org>2017-08-06 00:23:20 -0400
commitf167595ba1a4e0e419adc17de6af275bedf32822 (patch)
tree6a582fbda8ad9d72962359add99e5ae219dd030d /gnu/packages/maths.scm
parente3df6938acc2ba2d2f7333d911b8bdc3697f0f75 (diff)
parent01a61d7040b1794f36547b107abce6e967d59f21 (diff)
downloadguix-f167595ba1a4e0e419adc17de6af275bedf32822.tar
guix-f167595ba1a4e0e419adc17de6af275bedf32822.tar.gz
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/maths.scm')
-rw-r--r--gnu/packages/maths.scm54
1 files changed, 49 insertions, 5 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 3d461c7602..45884c20ff 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -561,18 +561,17 @@ computations.")
(define-public hdf4
(package
(name "hdf4")
- (version "4.2.12")
+ (version "4.2.13")
(source
(origin
(method url-fetch)
(uri (string-append "https://support.hdfgroup.org/ftp/HDF/releases/HDF"
version "/src/hdf-" version ".tar.bz2"))
(sha256
- (base32 "020jh563sjyxsgml8l809d2i1d4ms9shivwj3gbm7n0ilxbll8id"))
+ (base32 "1wz0586zh91pqb95wvr0pbh71a8rz358fdj6n2ksp85x2cis9lsm"))
(patches (search-patches "hdf4-architectures.patch"
"hdf4-reproducibility.patch"
"hdf4-shared-fortran.patch"))))
-
(build-system gnu-build-system)
(native-inputs
`(("gfortran" ,gfortran)
@@ -1627,12 +1626,12 @@ programming problems.")
(define-public r-pracma
(package
(name "r-pracma")
- (version "2.0.4")
+ (version "2.0.7")
(source (origin
(method url-fetch)
(uri (cran-uri "pracma" version))
(sha256
- (base32 "1z3i90mkzwvp9di17caf4934z2xlb2imm3hwxllcrbwvmnmhrwyc"))))
+ (base32 "0hxa0rbbp54j0c05qj7vfwhqfdmiz5ax8vhqxd09g33x7c0hqbc5"))))
(build-system r-build-system)
(propagated-inputs
`(("r-quadprog" ,r-quadprog)))
@@ -3068,6 +3067,8 @@ instruction sets. Thus, an application written with Vc can be compiled for:
@item NVIDIA GPUs / CUDA (in development)
@end enumerate\n")
(home-page "https://github.com/VcDevel/Vc")
+ ;; "No support_???.cpp file exists for this architecture."
+ (supported-systems '("x86_64-linux" "i686-linux"))
(license license:bsd-3)))
(define-public reducelcs
@@ -3196,3 +3197,46 @@ as equations, scalars, vectors, and matrices.")
theories} (SMT) solver. It provides a C/C++ API.")
(home-page "https://github.com/Z3Prover/z3")
(license license:expat)))
+
+(define-public cubicle
+ (package
+ (name "cubicle")
+ (version "1.1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://cubicle.lri.fr/cubicle-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1sny9c4fm14k014pk62ibpwbrjjirkx8xmhs9jg7q1hk7y7x3q2h"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("ocaml" ,ocaml)
+ ("which" ,which)))
+ (propagated-inputs
+ `(("z3" ,z3)))
+ (arguments
+ `(#:configure-flags (list "--with-z3")
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'configure-for-release
+ (lambda _
+ (substitute* "Makefile.in"
+ (("SVNREV=") "#SVNREV="))))
+ (add-before 'configure 'fix-/bin/sh
+ (lambda _
+ (substitute* "configure"
+ (("/bin/sh") (which "sh")))))
+ (add-before 'configure 'fix-smt-z3wrapper.ml
+ (lambda _
+ (substitute* "Makefile.in"
+ (("\\\\n") "")))))))
+ (home-page "http://cubicle.lri.fr/")
+ (synopsis "Model checker for array-based systems")
+ (description "Cubicle is an open source model checker for verifying safety
+properties of array-based systems. This is a syntactically restricted class of
+parametrized transition systems with states represented as arrays indexed by an
+arbitrary number of processes. Cache coherence protocols and mutual exclusion
+algorithms are typical examples of such systems.")
+ (license license:asl2.0)))