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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2019-01-10 14:55:50 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-01-12 12:14:28 +0100
commit24155bf40db2dfd25c167f41452ea0227a712654 (patch)
tree5f2bd4b098f4bcd9e4395b3b88341698d41af738 /gnu/packages/java-compression.scm
parent170436771968dfa272225ea45b63689b900fd317 (diff)
downloadguix-24155bf40db2dfd25c167f41452ea0227a712654.tar
guix-24155bf40db2dfd25c167f41452ea0227a712654.tar.gz
gnu: Move Java compression packages to new module.
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable. (java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz): Move these variables from here... * gnu/packages/java-compression.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module references.
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+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2017, 2019 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2017, 2018 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2018 Mark H Weaver <mhw@netris.org>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages java-compression)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix utils)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix build-system ant)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages java)
+ #:use-module (gnu packages perl))
+
+(define-public java-snappy
+ (package
+ (name "java-snappy")
+ (version "1.1.7.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/xerial/snappy-java/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1p557vdv006ysgxbpp83krmq0066k46108vyiyka69w8i4i8rbbm"))))
+ (build-system ant-build-system)
+ (arguments
+ `(#:jar-name "snappy.jar"
+ #:source-dir "src/main/java"
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'remove-binaries
+ (lambda _
+ (delete-file "lib/org/xerial/snappy/OSInfo.class")
+ (delete-file-recursively "src/main/resources/org/xerial/snappy/native")
+ #t))
+ (add-before 'build 'build-jni
+ (lambda _
+ ;; Rebuild one of the binaries we removed earlier
+ (invoke "javac" "src/main/java/org/xerial/snappy/OSInfo.java"
+ "-d" "lib")
+ ;; Link to the dynamic bitshuffle and snappy, not the static ones
+ (substitute* "Makefile.common"
+ (("-shared")
+ "-shared -lbitshuffle -lsnappy"))
+ (substitute* "Makefile"
+ ;; Don't try to use git, don't download bitshuffle source
+ ;; and don't build it.
+ (("\\$\\(SNAPPY_GIT_UNPACKED\\) ")
+ "")
+ ((": \\$\\(SNAPPY_GIT_UNPACKED\\)")
+ ":")
+ (("\\$\\(BITSHUFFLE_UNPACKED\\) ")
+ "")
+ ((": \\$\\(SNAPPY_SOURCE_CONFIGURED\\)") ":")
+ ;; What we actually want to build
+ (("SNAPPY_OBJ:=.*")
+ "SNAPPY_OBJ:=$(addprefix $(SNAPPY_OUT)/, \
+ SnappyNative.o BitShuffleNative.o)\n")
+ ;; Since we removed the directory structure in "native" during
+ ;; the previous phase, we need to recreate it.
+ (("NAME\\): \\$\\(SNAPPY_OBJ\\)")
+ "NAME): $(SNAPPY_OBJ)\n\t@mkdir -p $(@D)"))
+ ;; Finally we can run the Makefile to build the dynamic library.
+ ;; Use the -nocmake target to avoid a dependency on cmake,
+ ;; which in turn requires the "git_unpacked" directory.
+ (invoke "make" "native-nocmake")))
+ ;; Once we have built the shared library, we need to place it in the
+ ;; "build" directory so it can be added to the jar file.
+ (add-after 'build-jni 'copy-jni
+ (lambda _
+ (copy-recursively "src/main/resources/org/xerial/snappy/native"
+ "build/classes/org/xerial/snappy/native")
+ #t))
+ (add-before 'check 'fix-failing
+ (lambda _
+ (with-directory-excursion "src/test/java/org/xerial/snappy"
+ ;; This package assumes maven build, which puts results in "target".
+ ;; We put them in "build" instead, so fix that.
+ (substitute* "SnappyLoaderTest.java"
+ (("target/classes") "build/classes"))
+ ;; This requires Hadoop, which is not in Guix yet.
+ (delete-file "SnappyHadoopCompatibleOutputStreamTest.java"))
+ #t)))))
+ (inputs
+ `(("osgi-framework" ,java-osgi-framework)))
+ (propagated-inputs
+ `(("bitshuffle" ,bitshuffle-for-snappy)
+ ("snappy" ,snappy)))
+ (native-inputs
+ `(("junit" ,java-junit)
+ ("hamcrest" ,java-hamcrest-core)
+ ("xerial-core" ,java-xerial-core)
+ ("classworlds" ,java-plexus-classworlds)
+ ("commons-lang" ,java-commons-lang)
+ ("commons-io" ,java-commons-io)
+ ("perl" ,perl)))
+ (home-page "https://github.com/xerial/snappy-java")
+ (synopsis "Compression/decompression algorithm in Java")
+ (description "Snappy-java is a Java port of snappy, a fast C++
+compressor/decompressor.")
+ (license license:asl2.0)))
+
+(define-public java-snappy-1
+ (package
+ (inherit java-snappy)
+ (version "1.0.3-rc3")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/xerial/snappy-java/archive/"
+ "snappy-java-" version ".tar.gz"))
+ (sha256
+ (base32
+ "08hsxlqidiqck0q57fshwyv3ynyxy18vmhrai9fyc8mz17m7gsa3"))))
+ (arguments
+ `(#:jar-name "snappy.jar"
+ #:source-dir "src/main/java"
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'remove-binaries
+ (lambda _
+ (delete-file "lib/org/xerial/snappy/OSInfo.class")
+ (delete-file-recursively "src/main/resources/org/xerial/snappy/native")
+ #t))
+ (add-before 'build 'build-jni
+ (lambda _
+ ;; Rebuild one of the binaries we removed earlier
+ (invoke "javac" "src/main/java/org/xerial/snappy/OSInfo.java"
+ "-d" "lib")
+ ;; Link to the dynamic snappy, not the static ones
+ (substitute* "Makefile.common"
+ (("-shared") "-shared -lsnappy"))
+ (substitute* "Makefile"
+ ;; Don't download the sources here.
+ (("\\$\\(SNAPPY_UNPACKED\\) ") "")
+ ((": \\$\\(SNAPPY_UNPACKED\\) ") ":")
+ ;; What we actually want to build
+ (("SNAPPY_OBJ:=.*")
+ "SNAPPY_OBJ:=$(addprefix $(SNAPPY_OUT)/, SnappyNative.o)\n")
+ ;; Since we removed the directory structure in "native" during
+ ;; the previous phase, we need to recreate it.
+ (("NAME\\): \\$\\(SNAPPY_OBJ\\)")
+ "NAME): $(SNAPPY_OBJ)\n\t@mkdir -p $(@D)"))
+ ;; Finally we can run the Makefile to build the dynamic library.
+ (invoke "make" "native")))
+ ;; Once we have built the shared library, we need to place it in the
+ ;; "build" directory so it can be added to the jar file.
+ (add-after 'build-jni 'copy-jni
+ (lambda _
+ (copy-recursively "src/main/resources/org/xerial/snappy/native"
+ "build/classes/org/xerial/snappy/native")
+ #t))
+ (add-before 'check 'fix-tests
+ (lambda _
+ (mkdir-p "src/test/resources/org/xerial/snappy/")
+ (copy-recursively "src/test/java/org/xerial/snappy/testdata"
+ "src/test/resources/org/xerial/snappy/testdata")
+ (install-file "src/test/java/org/xerial/snappy/alice29.txt"
+ "src/test/resources/org/xerial/snappy/")
+ #t)))))))
+
+(define-public java-iq80-snappy
+ (package
+ (name "java-iq80-snappy")
+ (version "0.4")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/dain/snappy/archive/snappy-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0rb3zhci7w9wzd65lfnk7p3ip0n6gb58a9qpx8n7r0231gahyamf"))))
+ (build-system ant-build-system)
+ (arguments
+ `(#:jar-name "iq80-snappy.jar"
+ #:source-dir "src/main/java"
+ #:test-dir "src/test"
+ #:jdk ,icedtea-8
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (define (test class)
+ (invoke "java" "-cp" (string-append (getenv "CLASSPATH")
+ ":build/classes"
+ ":build/test-classes")
+ "-Dtest.resources.dir=src/test/resources"
+ "org.testng.TestNG" "-testclass"
+ class))
+ (invoke "ant" "compile-tests")
+ (test "org.iq80.snappy.SnappyFramedStreamTest")
+ (test "org.iq80.snappy.SnappyStreamTest")
+ #t))
+ (add-before 'build 'remove-hadoop-dependency
+ (lambda _
+ ;; We don't have hadoop
+ (delete-file "src/main/java/org/iq80/snappy/HadoopSnappyCodec.java")
+ (delete-file "src/test/java/org/iq80/snappy/TestHadoopSnappyCodec.java")
+ #t)))))
+ (home-page "https://github.com/dain/snappy")
+ (native-inputs
+ `(("guava" ,java-guava)
+ ("java-snappy" ,java-snappy)
+ ("hamcrest" ,java-hamcrest-core)
+ ("testng" ,java-testng)))
+ (synopsis "Java port of the Snappy (de)compressor")
+ (description
+ "Iq80-snappy is a port of the Snappy compressor and decompressor rewritten
+in pure Java. This compression code produces a byte-for-byte exact copy of the
+output created by the original C++ code, and is extremely fast.")
+ (license license:asl2.0)))
+
+(define-public java-jbzip2
+ (package
+ (name "java-jbzip2")
+ (version "0.9.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://storage.googleapis.com/"
+ "google-code-archive-source/v2/"
+ "code.google.com/jbzip2/"
+ "source-archive.zip"))
+ (file-name (string-append name "-" version ".zip"))
+ (sha256
+ (base32
+ "0ncmhlqmrfmj96nqf6p77b9ws35lcfsvpfxzwxi2asissc83z1l3"))))
+ (build-system ant-build-system)
+ (native-inputs
+ `(("unzip" ,unzip)
+ ("java-junit" ,java-junit)))
+ (arguments
+ `(#:tests? #f ; no tests
+ #:jar-name "jbzip2.jar"
+ #:source-dir "tags/release-0.9.1/src"
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-encoding-problems
+ (lambda _
+ ;; Some of the files we're patching are
+ ;; ISO-8859-1-encoded, so choose it as the default
+ ;; encoding so the byte encoding is preserved.
+ (with-fluids ((%default-port-encoding #f))
+ (substitute* "tags/release-0.9.1/src/org/itadaki/bzip2/HuffmanAllocator.java"
+ (("Milidi.") "Milidiu")))
+ #t)))))
+ (home-page "https://code.google.com/archive/p/jbzip2/")
+ (synopsis "Java bzip2 compression/decompression library")
+ (description "Jbzip2 is a Java bzip2 compression/decompression library.
+It can be used as a replacement for the Apache @code{CBZip2InputStream} /
+@code{CBZip2OutputStream} classes.")
+ (license license:expat)))
+
+(define-public java-tukaani-xz
+ (package
+ (name "java-tukaani-xz")
+ (version "1.6")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://tukaani.org/xz/xz-java-" version ".zip"))
+ (sha256
+ (base32
+ "1z3p1ri1gvl07inxn0agx44ck8n7wrzfmvkz8nbq3njn8r9wba8x"))))
+ (build-system ant-build-system)
+ (arguments
+ `(#:tests? #f; no tests
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _
+ ;; Our build system enters the first directory in the archive, but
+ ;; the package is not contained in a subdirectory
+ (chdir "..")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ ;; Do we want to install *Demo.jar?
+ (install-file "build/jar/xz.jar"
+ (string-append
+ (assoc-ref outputs "out")
+ "/share/java/xz.jar"))
+ #t)))))
+ (native-inputs
+ `(("unzip" ,unzip)))
+ (home-page "https://tukaani.org")
+ (synopsis "XZ in Java")
+ (description "Tukaani-xz is an implementation of xz compression/decompression
+algorithms in Java.")
+ (license license:public-domain)))