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authorJohn Darrington <jmd@gnu.org>2017-03-15 21:05:23 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-05-15 21:34:09 +0200
commitcdb2a21160a195f63c33955d8b9b9034e11dae46 (patch)
tree4baafd7a9d9b4ad0d3fba845541f870ecabd8e12 /gnu/packages/image-processing.scm
parent7fe4e556c03289753b1594e257446fb0306c44b7 (diff)
downloadguix-cdb2a21160a195f63c33955d8b9b9034e11dae46.tar
guix-cdb2a21160a195f63c33955d8b9b9034e11dae46.tar.gz
gnu: Add mia.
* gnu/packages/image-processing.scm (mia): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/image-processing.scm')
-rw-r--r--gnu/packages/image-processing.scm67
1 files changed, 66 insertions, 1 deletions
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index 21ee52e7fb..1753b926c6 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -22,12 +22,23 @@
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix download)
+ #:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
+ #:use-module (gnu packages algebra)
+ #:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages documentation)
+ #:use-module (gnu packages gnome)
+ #:use-module (gnu packages graphics)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages image)
- #:use-module (gnu packages perl))
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages xml)
+ #:use-module (gnu packages vtk))
;; We use the latest snapshot of this package because the latest release is
;; from 2011 and has known vulnerabilities that cannot easily be fixed by
@@ -63,3 +74,57 @@ demonstrative image storage and worklist servers.")
"file://COPYRIGHT"
"A union of the Apache 2.0 licence and various non-copyleft
licences similar to the Modified BSD licence."))))
+
+(define-public mia
+ (package
+ (name "mia")
+ (version "2.4.4")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/mia/mia/"
+ (version-major+minor version)
+ "/mia-" version ".tar.xz"))
+ (sha256
+ (base32
+ "124gvf8nkls59mlnx8ynq00n9zrah7a54gsywafx7qmfr0y95ra7"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:configure-flags
+ (list "-DMIA_CREATE_NIPYPE_INTERFACES=0"
+ (string-append "-DCMAKE_INSTALL_LIBDIR="
+ (assoc-ref %outputs "out") "/lib")
+ "-DCMAKE_CXX_FLAGS=-fpermissive")))
+ (inputs
+ `(("boost" ,boost)
+ ("dcmtk" ,dcmtk)
+ ("doxygen" ,doxygen)
+ ("eigen" ,eigen)
+ ("fftw" ,fftw)
+ ("fftwf" ,fftwf)
+ ("gsl" ,gsl)
+ ("gts" ,gts)
+ ("hdf5" ,hdf5)
+ ("itpp" ,itpp)
+ ("libjpeg" ,libjpeg)
+ ("libpng" ,libpng)
+ ("libtiff" ,libtiff)
+ ("libxml" ,libxml2)
+ ("libxml++" ,libxml++)
+ ("maxflow" ,maxflow)
+ ("niftilib" ,niftilib)
+ ("nlopt" ,nlopt)
+ ("openexr" ,openexr)
+ ("python-lxml" ,python2-lxml)
+ ("vtk" ,vtk)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("python" ,python-2)))
+ (home-page "http://mia.sourceforge.net")
+ (synopsis "Toolkit for gray scale medical image analysis")
+ (description "MIA provides a combination of command line tools, plug-ins,
+and libraries that make it possible run image processing tasks interactively
+in a command shell and to prototype using the shell's scripting language. It
+is built around a plug-in structure that makes it easy to add functionality
+without compromising the original code base and it makes use of a wide variety
+of external libraries that provide additional functionality.")
+ (license license:gpl3+)))