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authorTobias Geerinckx-Rice <me@tobias.gr>2023-02-12 01:00:00 +0100
committerTobias Geerinckx-Rice <me@tobias.gr>2023-02-19 01:00:01 +0100
commit1e6ddceb8318d413745ca1c9d91fde01b1e0364b (patch)
tree4563ba325496be1950bdb302af8eb895fb5bddb8 /gnu/packages/cran.scm
parentc756c62cfdba8d4079be1ba9e370779b850f16b6 (diff)
downloadguix-1e6ddceb8318d413745ca1c9d91fde01b1e0364b.tar
guix-1e6ddceb8318d413745ca1c9d91fde01b1e0364b.tar.gz
gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS. * gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise. * gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]: Likewise. * gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise. * gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise. * gnu/packages/astronomy.scm (casacore, sextractor, libnova) (xplanet)[home-page]: Likewise. * gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao) (freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms) (libmodplug, libxmp, xmp, sox, drc, gsm, gnaural) (streamripper)[home-page]: Likewise. * gnu/packages/authentication.scm (pamtester)[home-page]: Likewise. * gnu/packages/backup.scm (grsync)[home-page]: Likewise. * gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma) (r-plgem)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1) (bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard) (java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools) (snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip) (libsbml)[home-page]: Likewise. * gnu/packages/build-tools.scm (tup)[home-page]: Likewise. * gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools) (cd-discid)[home-page]: Likewise. * gnu/packages/check.scm (cunit, python-nose) (python-pyhamcrest)[home-page]: Likewise. * gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise. * gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise. * gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise. * gnu/packages/compression.scm (p7zip)[home-page]: Likewise. * gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial) (r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook) (r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags) (r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm) (r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet) (r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde) (r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels) (r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom) (r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat) (r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]: Likewise. * gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13) (rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20) (rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20) (rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20) (rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise. * gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise. * gnu/packages/curl.scm (curlpp)[home-page]: Likewise. * gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger) (libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers) (soci)[home-page]: Likewise. * gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise. * gnu/packages/debug.scm (remake)[home-page]: Likewise. * gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise. * gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise. * gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise. * gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise. * gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise. * gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise. * gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise. * gnu/packages/electronics.scm (xoscope)[home-page]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu) (emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel) (emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc) (emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap) (emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+) (emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise. * gnu/packages/embedded.scm (sdcc)[home-page]: Likewise. * gnu/packages/engineering.scm (asco, libngspice, libspnav) (openctm)[home-page]: Likewise. * gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise. * gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]: Likewise. * gnu/packages/finance.scm (gbonds)[home-page]: Likewise. * gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]: Likewise. * gnu/packages/fltk.scm (ntk)[home-page]: Likewise. * gnu/packages/fonts.scm (font-terminus, font-tex-gyre) (font-comic-neue)[home-page]: Likewise. * gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]: Likewise. * gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave) (python-myhdl)[home-page]: Likewise. * gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise. * gnu/packages/ftp.scm (weex)[home-page]: Likewise. * gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r--gnu/packages/cran.scm108
1 files changed, 54 insertions, 54 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c7a81b96eb..c80e98134a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -534,7 +534,7 @@ by Luis Torgo, published by CRC Press.")
"05mv6xhm15b0mq9kzyiblkb14bdqmjrwl64ghdk66il0w8i7p6nh"))))
(properties `((upstream-name . "emdist")))
(build-system r-build-system)
- (home-page "http://www.rforge.net/emd")
+ (home-page "https://www.rforge.net/emd")
(synopsis "Earth mover's distance")
(description
"This package provides tools to calculate the Earth Mover's
@@ -919,7 +919,7 @@ can read and write both the metadata and the cell data in a Sheet.")
(build-system r-build-system)
(inputs (list proj-7 zlib))
(native-inputs (list pkg-config))
- (home-page "http://www.rforge.net/proj4/")
+ (home-page "https://www.rforge.net/proj4/")
(synopsis "Simple interface to the PROJ.4 cartographic projections library")
(description
"This package provides a simple interface to lat/long projection and
@@ -1484,7 +1484,7 @@ proposals for count data.")
(build-system r-build-system)
(propagated-inputs
(list r-lattice))
- (home-page "http://zoo.R-Forge.R-project.org/")
+ (home-page "https://zoo.R-Forge.R-project.org/")
(synopsis "S3 infrastructure for regular and irregular time series")
(description "This package contains an S3 class with methods for totally
ordered indexed observations. It is particularly aimed at irregular time
@@ -1584,7 +1584,7 @@ in good performances with large files.")
r-tidyselect))
(native-inputs
(list r-knitr))
- (home-page "http://corybrunson.github.io/ggalluvial/")
+ (home-page "https://corybrunson.github.io/ggalluvial/")
(synopsis "Alluvial plots for ggplot2")
(description "This package provides alluvial plots for @code{ggplot2}.
Alluvial plots use variable-width ribbons and stacked bar plots to represent
@@ -1972,7 +1972,7 @@ higher.")
(properties `((upstream-name . "OrgMassSpecR")))
(build-system r-build-system)
(native-inputs (list r-knitr))
- (home-page "http://OrgMassSpec.github.io/")
+ (home-page "https://OrgMassSpec.github.io/")
(synopsis "Organic or biological mass spectrometry data analysis")
(description
"This package @code{OrgMassSpecR} is an extension of the @code{R}
@@ -2194,7 +2194,7 @@ with default R plot functions.")
(list r-colorspace r-scatterplot3d))
(native-inputs
(list r-knitr))
- (home-page "http://oompa.r-forge.r-project.org/")
+ (home-page "https://oompa.r-forge.r-project.org/")
(synopsis "Qualitative palettes with many colors")
(description
"This package provides tools for creating, viewing, and assessing
@@ -4768,7 +4768,7 @@ initiative to bring PASSTEC 2000 functionalities to R.")
r-mvtnorm
r-rpart
r-survival))
- (home-page "http://partykit.R-Forge.R-project.org/partykit")
+ (home-page "https://partykit.R-Forge.R-project.org/partykit")
(synopsis "Toolkit for recursive partytioning")
(description
"This package provides a toolkit with infrastructure for representing,
@@ -4937,7 +4937,7 @@ value for each cluster in a dendrogram.")
(sha256
(base32 "0inmnmi0pqmbqnl00d5yal1bmd7awigxd7sgzjsil9c1k55f4r8y"))))
(build-system r-build-system)
- (home-page "http://www.rcpp.org")
+ (home-page "https://www.rcpp.org")
(synopsis "Seamless R and C++ integration")
(description
"The Rcpp package provides R functions as well as C++ classes which offer
@@ -5370,7 +5370,7 @@ any subsequent lookup as it keeps the hash table in memory.")
"0krwxq4985x3n5mzx8i9smwpkd5sifbfgy9z7ikwk84734km683j"))))
(build-system r-build-system)
(propagated-inputs (list r-bit))
- (home-page "http://ff.r-forge.r-project.org/")
+ (home-page "https://ff.r-forge.r-project.org/")
(synopsis "Memory-efficient storage of large data on disk and access functions")
(description
"This package provides data structures that are stored on disk but
@@ -6046,7 +6046,7 @@ classes in the @code{stats4} package.")
(build-system r-build-system)
(propagated-inputs
(list r-bbmle r-coda r-lattice r-mass r-plyr))
- (home-page "http://www.math.mcmaster.ca/bolker/emdbook")
+ (home-page "https://www.math.mcmaster.ca/bolker/emdbook")
(synopsis "Support functions and data for \"Ecological Models and Data\"")
(description
"This package provides auxiliary functions and data sets for \"Ecological
@@ -6125,7 +6125,7 @@ functions from LINPACK.")
(list r-mass r-survival))
(native-inputs
(list r-knitr))
- (home-page "http://riskassessment.r-forge.r-project.org")
+ (home-page "https://riskassessment.r-forge.r-project.org")
(synopsis "Fitting a parametric distribution from data")
(description
"This package extends the @code{fitdistr} function of the MASS package
@@ -6591,7 +6591,7 @@ interface to @code{PostgreSQL}, a relational database.")
"1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1"))))
(build-system r-build-system)
(propagated-inputs (list r-lpsolve))
- (home-page "http://linprog.r-forge.r-project.org/")
+ (home-page "https://linprog.r-forge.r-project.org/")
(synopsis "Linear programming and optimization")
(description
"This package can be used to solve Linear Programming / Linear
@@ -6612,7 +6612,7 @@ Optimization problems by using the simplex algorithm.")
(build-system r-build-system)
(propagated-inputs
(list r-magic r-linprog r-lpsolve r-rcpp r-rcppprogress))
- (home-page "http://geometry.r-forge.r-project.org/")
+ (home-page "https://geometry.r-forge.r-project.org/")
(synopsis "Mesh generator and surface tessellator")
(description
"This package makes the qhull library available in R, in a similar manner
@@ -7644,7 +7644,7 @@ phylogenies and ancestral character states.")
"0vc2is1hf1g0sw92kzl8mddck264qwiqgm5q2wkcwwz65fss7mkf"))))
(build-system r-build-system)
(propagated-inputs (list r-proxy))
- (home-page "http://dtw.r-forge.r-project.org/")
+ (home-page "https://dtw.r-forge.r-project.org/")
(synopsis "Dynamic Time Warping Algorithms")
(description "This package provides a comprehensive implementation of
@dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the
@@ -10280,7 +10280,7 @@ stored data and compression with the LZ4 and ZSTD compressors.")
(properties `((upstream-name . "fst")))
(build-system r-build-system)
(propagated-inputs (list r-fstcore r-rcpp))
- (home-page "http://www.fstpackage.org")
+ (home-page "https://www.fstpackage.org")
(synopsis "Fast serialization of data frames")
(description
"The fst package for R provides a fast, easy and flexible way to
@@ -11359,7 +11359,7 @@ functions.")
(list jags))
(native-inputs
(list pkg-config))
- (home-page "http://mcmc-jags.sourceforge.net")
+ (home-page "https://mcmc-jags.sourceforge.net")
(synopsis "Bayesian graphical models using MCMC")
(description
"This package provides an R interface to the JAGS MCMC library. JAGS is
@@ -12480,7 +12480,7 @@ through permutation testing.")
(list r-igraph r-network))
(native-inputs
(list r-knitr))
- (home-page "http://mbojan.github.io/intergraph")
+ (home-page "https://mbojan.github.io/intergraph")
(synopsis "Coercion routines for network data objects")
(description
"Functions implemented in this package allow coercing (i.e. convert)
@@ -12830,7 +12830,7 @@ data with multiple data types.")
(build-system r-build-system)
(propagated-inputs
(list r-kernsmooth))
- (home-page "http://qualV.R-Forge.R-Project.org/")
+ (home-page "https://qualV.R-Forge.R-Project.org/")
(synopsis "Qualitative Validation Methods")
(description
"This package provides qualitative methods for the validation of dynamic
@@ -12891,7 +12891,7 @@ subsequence} (LCS) using a dynamic programming algorithm.")
r-vctrs))
(native-inputs
(list r-knitr))
- (home-page "http://larmarange.github.io/labelled/")
+ (home-page "https://larmarange.github.io/labelled/")
(synopsis "Manipulating labelled data")
(description
"This package provides useful functions to deal with the
@@ -13608,7 +13608,7 @@ console, resulting in an interactive editing environment.")
r-mitools
r-numderiv
r-survival))
- (home-page "http://r-survey.r-forge.r-project.org/survey/")
+ (home-page "https://r-survey.r-forge.r-project.org/survey/")
(synopsis "Analysis of complex survey samples")
(description
"This package provides tools for the analysis of complex survey samples.
@@ -14109,7 +14109,7 @@ and permutation inference in the framework of Strasser and Weber (1999).")
r-multcomp
r-mvtnorm
r-survival))
- (home-page "http://coin.r-forge.r-project.org")
+ (home-page "https://coin.r-forge.r-project.org")
(synopsis "Conditional inference procedures in a permutation test framework")
(description
"This package provides conditional inference procedures for the general
@@ -15747,7 +15747,7 @@ al. (2010) <DOI:10.1016/j.neuroimage.2010.04.241>, Tabelow and Polzehl (2011)
(base32
"082qj08kzyzwvjacwq0sl3xxdx6iz5hgx6q24jv1mnvx7z5xn5ry"))))
(build-system r-build-system)
- (home-page "http://minato.sip21c.org/msb/")
+ (home-page "https://minato.sip21c.org/msb/")
(synopsis "Functions for medical statistics book with demographic data")
(description
"This package provides several utility functions for the book entitled
@@ -16050,7 +16050,7 @@ Processing.")
(build-system r-build-system)
(propagated-inputs
(list r-bh r-nlp r-rcpp r-slam r-xml2))
- (home-page "http://tm.r-forge.r-project.org/")
+ (home-page "https://tm.r-forge.r-project.org/")
(synopsis "Text mining package")
(description
"This package provides a framework for text mining applications within R.")
@@ -16411,7 +16411,7 @@ structure of any data type.")
(base32
"028fw61n61i79fhnaqx7gmdifdpbvp3yiaq9vvfrbv4k7i84r83i"))))
(build-system r-build-system)
- (home-page "http://strimmerlab.org/software/corpcor/")
+ (home-page "https://strimmerlab.org/software/corpcor/")
(synopsis "Efficient estimation of covariance and (partial) correlation")
(description
"This package implements a James-Stein-type shrinkage estimator for the
@@ -17177,7 +17177,7 @@ limitations\" using the GNU Multiple Precision library.")
(list r-gmp))
(native-inputs
(list pkg-config))
- (home-page "http://rmpfr.r-forge.r-project.org/")
+ (home-page "https://rmpfr.r-forge.r-project.org/")
(synopsis "R bindings to the MPFR library")
(description
"This package supports arithmetic (via S4 classes and methods) for
@@ -17708,7 +17708,7 @@ covariance functions for large data sets.")
(build-system r-build-system)
(propagated-inputs
(list r-fields r-maps))
- (home-page "http://spatialextremes.r-forge.r-project.org/")
+ (home-page "https://spatialextremes.r-forge.r-project.org/")
(synopsis "Modelling spatial extremes")
(description
"This package provides tools for the statistical modelling of spatial
@@ -17902,7 +17902,7 @@ covariates of each feature, making the downstream analysis easy.")
"046w3xbr535c5jyd68adv42a7limxp1mv57b5w6w673w707lmw2p"))))
(build-system r-build-system)
(propagated-inputs (list r-corpcor))
- (home-page "http://strimmerlab.org/software/longitudinal/")
+ (home-page "https://strimmerlab.org/software/longitudinal/")
(synopsis "Analysis of multiple time course data")
(description
"This package contains general data structures and functions for
@@ -17926,7 +17926,7 @@ dynamical correlation and dynamical covariance.")
(build-system r-build-system)
(propagated-inputs
(list r-corpcor r-fdrtool r-longitudinal))
- (home-page "http://strimmerlab.org/software/genenet/")
+ (home-page "https://strimmerlab.org/software/genenet/")
(synopsis "Modeling and inferring gene networks")
(description
"This package analyzes gene expression (time series) data with focus on
@@ -18720,7 +18720,7 @@ identifying outliers.")
(propagated-inputs
(list r-rcpp r-rcpparmadillo))
(native-inputs (list r-knitr))
- (home-page "http://www.perossi.org/home/bsm-1")
+ (home-page "https://www.perossi.org/home/bsm-1")
(synopsis "Bayesian inference for marketing/micro-econometrics")
(description
"This package covers many important models used in marketing and
@@ -19787,7 +19787,7 @@ barplots or heatmaps.")
(list r-ade4 r-segmented))
(inputs
(list zlib))
- (home-page "http://seqinr.r-forge.r-project.org/")
+ (home-page "https://seqinr.r-forge.r-project.org/")
(synopsis "Biological sequences retrieval and analysis")
(description
"This package provides tools for exploratory data analysis and data
@@ -21573,7 +21573,7 @@ repository.")
(build-system r-build-system)
(propagated-inputs
(list r-kernsmooth r-mass))
- (home-page "http://mpm.r-forge.r-project.org")
+ (home-page "https://mpm.r-forge.r-project.org")
(synopsis "Multivariate projection methods")
(description
"This is a package for exploratory graphical analysis of multivariate
@@ -22212,7 +22212,7 @@ Row} (CSR) format.")
r-stringi))
(native-inputs
(list r-knitr))
- (home-page "http://text2vec.org")
+ (home-page "https://text2vec.org")
(synopsis "Text mining framework for R")
(description
"This package provides fast and memory-friendly tools for text
@@ -23594,7 +23594,7 @@ effect size.")
(list r-sp))
(native-inputs
(list pkg-config r-knitr))
- (home-page "http://rgdal.r-forge.r-project.org")
+ (home-page "https://rgdal.r-forge.r-project.org")
(synopsis "Bindings for the Geospatial Data Abstraction Library")
(description
"This package provides bindings to the Geospatial Data Abstraction
@@ -25276,7 +25276,7 @@ transcription, ...")
(list libsndfile))
(propagated-inputs
(list r-tuner))
- (home-page "http://rug.mnhn.fr/seewave")
+ (home-page "https://rug.mnhn.fr/seewave")
(synopsis "Sound analysis and synthesis")
(description
"This package provides functions for analysing, manipulating, displaying,
@@ -25846,7 +25846,7 @@ R.")
r-locfit
r-rcolorbrewer))
(native-inputs (list gfortran))
- (home-page "http://pkg.robjhyndman.com/hdrcde")
+ (home-page "https://pkg.robjhyndman.com/hdrcde")
(synopsis "Highest density regions and conditional density estimation")
(description
"This is a package for the computation of highest density regions in one
@@ -26632,7 +26632,7 @@ different conceptual parts of the algorithm.")
(build-system r-build-system)
(propagated-inputs
(list r-mass r-minpack-lm r-rgl r-scatterplot3d))
- (home-page "http://www.maths.nottingham.ac.uk/~ild/shapes")
+ (home-page "https://www.maths.nottingham.ac.uk/~ild/shapes")
(synopsis "Statistical shape analysis")
(description
"This package provides routines for the statistical analysis of landmark
@@ -26748,7 +26748,7 @@ statistical shape analysis and archetypal analysis.")
(propagated-inputs
(list r-bh
r-rcpp))
- (home-page "http://dirk.eddelbuettel.com/code/anytime.html")
+ (home-page "https://dirk.eddelbuettel.com/code/anytime.html")
(synopsis "Converter of input to POSIXct or Date")
(description
"The package converts the input in any one of character, integer, numeric,
@@ -27689,7 +27689,7 @@ Gibbs sampling by Xuan-Hieu Phan and co-authors.")
r-rcpparmadillo
r-slam
r-stringr))
- (home-page "http://www.structuraltopicmodel.com/")
+ (home-page "https://www.structuraltopicmodel.com/")
(synopsis "Estimation of the Structural Topic Model")
(description
"The @dfn{Structural Topic Model} (STM) allows researchers to estimate
@@ -28196,7 +28196,7 @@ model objects and help reduce the size of model objects saved to disk.")
(build-system r-build-system)
(propagated-inputs
(list r-plyr r-rjson r-whisker))
- (home-page "http://christophergandrud.github.io/d3Network/")
+ (home-page "https://christophergandrud.github.io/d3Network/")
(synopsis "Create D3 JavaScript network, tree, dendrogram, and Sankey graphs")
(description
"This package is intended to make it easy to create D3 JavaScript
@@ -28329,7 +28329,7 @@ well as Ravand and Robitzsch (2015).")
(build-system r-build-system)
(propagated-inputs
(list r-cdm r-rcpp r-rcpparmadillo))
- (home-page "http://www.edmeasurementsurveys.com/TAM/Tutorials/")
+ (home-page "https://www.edmeasurementsurveys.com/TAM/Tutorials/")
(synopsis "Test analysis modules")
(description
"This package includes tools for marginal maximum likelihood estimation
@@ -29942,7 +29942,7 @@ permuted copies (shadows).")
(list r-quadprog))
(native-inputs
(list r-knitr))
- (home-page "http://directlabels.r-forge.r-project.org/")
+ (home-page "https://directlabels.r-forge.r-project.org/")
(synopsis "Direct labels for multicolor plots")
(description
"This package provides an extensible framework for automatically placing
@@ -30543,7 +30543,7 @@ Kolmogorov-Smirnov, ANOVA) are also supported.")
(properties
`((upstream-name . "spatstat.utils")))
(build-system r-build-system)
- (home-page "http://www.spatstat.org")
+ (home-page "https://www.spatstat.org")
(synopsis "Utility functions for spatstat")
(description
"This package contains utility functions for the @code{spatstat} package
@@ -30566,7 +30566,7 @@ which may also be useful for other purposes.")
(build-system r-build-system)
(propagated-inputs
(list r-abind r-matrix r-spatstat-utils r-tensor))
- (home-page "http://spatstat.org/")
+ (home-page "https://spatstat.org/")
(synopsis "Sparse three-dimensional arrays and linear algebra utilities")
(description
"This package defines sparse three-dimensional arrays and supports
@@ -30589,7 +30589,7 @@ matrix calculations that are common in statistics, such as quadratic forms.")
(build-system r-build-system)
(propagated-inputs
(list r-matrix r-spatstat-utils))
- (home-page "http://www.spatstat.org")
+ (home-page "https://www.spatstat.org")
(synopsis "Datasets for spatstat")
(description
"This package contains all the datasets for the @code{spatstat}
@@ -30611,7 +30611,7 @@ package.")
(build-system r-build-system)
(propagated-inputs
(list r-deldir r-polyclip r-spatstat-data r-spatstat-utils))
- (home-page "http://spatstat.org/")
+ (home-page "https://spatstat.org/")
(synopsis "Geometrical functionality of the spatstat package")
(description
"This is a subset of the original spatstat package, containing the
@@ -30645,7 +30645,7 @@ for the geometry of linear networks.")
r-spatstat-sparse
r-spatstat-utils
r-tensor))
- (home-page "http://spatstat.org/")
+ (home-page "https://spatstat.org/")
(synopsis "Core functionality of the spatstat package")
(description
"This is a subset of the original spatstat package, containing all of the
@@ -30675,7 +30675,7 @@ user-level code from spatstat, except for the code for linear networks.")
r-spatstat-random
r-spatstat-sparse
r-spatstat-utils))
- (home-page "http://spatstat.org/")
+ (home-page "https://spatstat.org/")
(synopsis "Linear networks functionality of the spatstat package")
(description
"This is a subset of the spatstat package, containing its functionality
@@ -30695,7 +30695,7 @@ for spatial data on a linear network.")
(properties `((upstream-name . "spatstat.random")))
(build-system r-build-system)
(propagated-inputs (list r-spatstat-data r-spatstat-geom r-spatstat-utils))
- (home-page "http://spatstat.org/")
+ (home-page "https://spatstat.org/")
(synopsis "Random Generation Functionality for the 'spatstat' Family")
(description
"This package provides functionality for random generation of spatial
@@ -30727,7 +30727,7 @@ sampler).")
(list r-spatstat-data r-spatstat-explore r-spatstat-geom
r-spatstat-linnet r-spatstat-model r-spatstat-random
r-spatstat-utils))
- (home-page "http://www.spatstat.org")
+ (home-page "https://www.spatstat.org")
(synopsis "Spatial Point Pattern analysis, model-fitting, simulation, tests")
(description
"This package provides a comprehensive toolbox for analysing Spatial
@@ -30803,7 +30803,7 @@ semantics and supports interaction with @code{ALTREP} vectors.")
(properties `((upstream-name . "RcppTOML")))
(build-system r-build-system)
(propagated-inputs (list r-rcpp))
- (home-page "http://dirk.eddelbuettel.com/code/rcpp.toml.html")
+ (home-page "https://dirk.eddelbuettel.com/code/rcpp.toml.html")
(synopsis "Rcpp bindings to TOML parser")
(description
"The TOML configuration format specifies an excellent format suitable for
@@ -32468,7 +32468,7 @@ this variability problem can be overcome.")
"1kdnm5ilfn5fclry3f1d518761hykrqgjhv69kc881r2fpcfa1lv"))))
(properties `((upstream-name . "MLEcens")))
(build-system r-build-system)
- (home-page "http://stat.ethz.ch/~maathuis/")
+ (home-page "https://stat.ethz.ch/~maathuis/")
(synopsis "Computation of the MLE for bivariate (interval) censored data")
(description
"This package contains functions to compute the nonparametric
@@ -32786,7 +32786,7 @@ other R users.")
r-spatstat-geom
r-tibble
r-uwot))
- (home-page "http://www.satijalab.org/seurat")
+ (home-page "https://www.satijalab.org/seurat")
(synopsis "Seurat is an R toolkit for single cell genomics")
(description
"This package is an R package designed for QC, analysis, and
@@ -36132,7 +36132,7 @@ large datasets.")
r-mass
r-nnet
r-randomforest))
- (home-page "http://www.sciviews.org/zooimage")
+ (home-page "https://www.sciviews.org/zooimage")
(synopsis "Machine learning algorithms with unified interface")
(description
"This package provides a unified interface to various machine learning
@@ -36165,7 +36165,7 @@ algorithms. Confusion matrices are provided too.")
r-svdialogs
r-svmisc
r-tiff))
- (home-page "http://www.sciviews.org/zooimage")
+ (home-page "https://www.sciviews.org/zooimage")
(synopsis "Analysis of numerical plankton images")
(description
"This package provides a solution for analyzing digital images of