diff options
author | Tobias Geerinckx-Rice <me@tobias.gr> | 2023-02-12 01:00:00 +0100 |
---|---|---|
committer | Tobias Geerinckx-Rice <me@tobias.gr> | 2023-02-19 01:00:01 +0100 |
commit | 1e6ddceb8318d413745ca1c9d91fde01b1e0364b (patch) | |
tree | 4563ba325496be1950bdb302af8eb895fb5bddb8 /gnu/packages/cran.scm | |
parent | c756c62cfdba8d4079be1ba9e370779b850f16b6 (diff) | |
download | guix-1e6ddceb8318d413745ca1c9d91fde01b1e0364b.tar guix-1e6ddceb8318d413745ca1c9d91fde01b1e0364b.tar.gz |
gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise.
* gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]:
Likewise.
* gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise.
* gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise.
* gnu/packages/astronomy.scm (casacore, sextractor, libnova)
(xplanet)[home-page]: Likewise.
* gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao)
(freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms)
(libmodplug, libxmp, xmp, sox, drc, gsm, gnaural)
(streamripper)[home-page]: Likewise.
* gnu/packages/authentication.scm (pamtester)[home-page]: Likewise.
* gnu/packages/backup.scm (grsync)[home-page]: Likewise.
* gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma)
(r-plgem)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1)
(bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard)
(java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools)
(snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip)
(libsbml)[home-page]: Likewise.
* gnu/packages/build-tools.scm (tup)[home-page]: Likewise.
* gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools)
(cd-discid)[home-page]: Likewise.
* gnu/packages/check.scm (cunit, python-nose)
(python-pyhamcrest)[home-page]: Likewise.
* gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise.
* gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise.
* gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise.
* gnu/packages/compression.scm (p7zip)[home-page]: Likewise.
* gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial)
(r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook)
(r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags)
(r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm)
(r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet)
(r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde)
(r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels)
(r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom)
(r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat)
(r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]:
Likewise.
* gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13)
(rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20)
(rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20)
(rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20)
(rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise.
* gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise.
* gnu/packages/curl.scm (curlpp)[home-page]: Likewise.
* gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger)
(libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers)
(soci)[home-page]: Likewise.
* gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise.
* gnu/packages/debug.scm (remake)[home-page]: Likewise.
* gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise.
* gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise.
* gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise.
* gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise.
* gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise.
* gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise.
* gnu/packages/electronics.scm (xoscope)[home-page]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu)
(emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel)
(emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc)
(emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap)
(emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+)
(emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise.
* gnu/packages/embedded.scm (sdcc)[home-page]: Likewise.
* gnu/packages/engineering.scm (asco, libngspice, libspnav)
(openctm)[home-page]: Likewise.
* gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise.
* gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]:
Likewise.
* gnu/packages/finance.scm (gbonds)[home-page]: Likewise.
* gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]:
Likewise.
* gnu/packages/fltk.scm (ntk)[home-page]: Likewise.
* gnu/packages/fonts.scm (font-terminus, font-tex-gyre)
(font-comic-neue)[home-page]: Likewise.
* gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]:
Likewise.
* gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave)
(python-myhdl)[home-page]: Likewise.
* gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise.
* gnu/packages/ftp.scm (weex)[home-page]: Likewise.
* gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc)
(eureka, plib)[home-page]: Likewise.
* gnu/packages/games.scm (abe, alex4, armagetronad, barony)
(foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally)
(cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki)
(quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks)
(flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise.
* gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise.
* gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise.
* gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish)
(workrave)[home-page]: Likewise.
* gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise.
* gnu/packages/graph.scm (mscgen)[home-page]: Likewise.
* gnu/packages/graphics.scm (assimp, alembic, ctl, agg)
(opencsg)[home-page]: Likewise.
* gnu/packages/graphviz.scm (gts)[home-page]: Likewise.
* gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise.
* gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise.
* gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted)
(ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]:
Likewise.
* gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg)
(ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats)
(ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints)
(ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon)
(ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards)
(ghc-template-haskell, ghc-boot-th, ghc-binary-orphans)
(ghc-postgresql-simple)[home-page]: Likewise.
* gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise.
* gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise.
* gnu/packages/image-processing.scm (mia)[home-page]: Likewise.
* gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr)
(qiv)[home-page]: Likewise.
* gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib)
(sng, mtpaint)[home-page]: Likewise.
* gnu/packages/java-xml.scm (java-simple-xml, java-jaxp)
(java-apache-xml-commons-resolver)[home-page]: Likewise.
* gnu/packages/java.scm (java-cisd-base, java-cisd-args4j)
(java-hamcrest-core, java-jsr305, java-eclipse-osgi)
(java-eclipse-equinox-common, java-eclipse-core-jobs)
(java-eclipse-equinox-registry, java-eclipse-equinox-app)
(java-eclipse-equinox-preferences, java-eclipse-core-contenttype)
(java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq)
(java-cdi-api)[home-page]: Likewise.
* gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise.
* gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]:
Likewise.
* gnu/packages/kde-internet.scm (kget)[home-page]: Likewise.
* gnu/packages/kde-systemtools.scm (dolphin-plugins)
(konsole)[home-page]: Likewise.
* gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise.
* gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise.
* gnu/packages/lego.scm (nqc)[home-page]: Likewise.
* gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise.
* gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise.
* gnu/packages/libffi.scm (libffi)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]:
Likewise.
* gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise.
* gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools)
(kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise.
* gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]:
Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser)
(sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore)
(sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell)
(sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise.
* gnu/packages/lisp.scm (lush2)[home-page]: Likewise.
* gnu/packages/logging.scm (log4cpp)[home-page]: Likewise.
* gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]:
Likewise.
* gnu/packages/mail.scm (muchsync, procmail, sendmail)
(opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise.
* gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise.
* gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh)
(metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3)
(frama-c)[home-page]: Likewise.
* gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]:
Likewise.
* gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise.
* gnu/packages/monitoring.scm (python-whisper, python-carbon)
(hostscope)[home-page]: Likewise.
* gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321)
(lame)[home-page]: Likewise.
* gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise.
* gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol)
(portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot)
(schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2)
(shiru-lv2)[home-page]: Likewise.
* gnu/packages/ncurses.scm (stfl)[home-page]: Likewise.
* gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird)
(tunctl, traceroute)[home-page]: Likewise.
* gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise.
* gnu/packages/ntp.scm (openntpd)[home-page]: Likewise.
* gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib)
(ocaml-graph, cubicle)[home-page]: Likewise.
* gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise.
* gnu/packages/package-management.scm (xstow, modules)[home-page]:
Likewise.
* gnu/packages/parallel.scm (xjobs)[home-page]: Likewise.
* gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]:
Likewise.
* gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]:
Likewise.
* gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]:
Likewise.
* gnu/packages/plan9.scm (drawterm)[home-page]: Likewise.
* gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]:
Likewise.
* gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise.
* gnu/packages/profiling.scm (otf2)[home-page]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise.
* gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-cssutils)
(python-translationstring)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml)
(python-docutils, python-pexpect, python-importlib-resources)
(python-simplegeneric, python-urwid, python-xlrd, python-xlwt)
(python-pyasn1, python-pythondialog, python-tftpy, python-random2)
(python-arcp, python-pyopengl, python-sortedcollections)
(python-sortedcontainers, python-yapsy, python-pydispatcher)
(python-posix-ipc)[home-page]: Likewise.
* gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise.
* gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise.
* gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise.
* gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise.
* gnu/packages/regex.scm (tre)[home-page]: Likewise.
* gnu/packages/rsync.scm (librsync)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox)
(ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise.
* gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise.
* gnu/packages/screen.scm (dtach)[home-page]: Likewise.
* gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise.
* gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise.
* gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise.
* gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]:
Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise.
* gnu/packages/speech.scm (espeak)[home-page]: Likewise.
* gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise.
* gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice)
(r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable)
(python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm)
(r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]:
Likewise.
* gnu/packages/swig.scm (swig)[home-page]: Likewise.
* gnu/packages/task-management.scm (wtime)[home-page]: Likewise.
* gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise.
* gnu/packages/terminals.scm (libtermkey, mlterm, libvterm)
(libvterm)[home-page]: Likewise.
* gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs)
(texlive-csplain, biber, texmaker)[home-page]: Likewise.
* gnu/packages/text-editors.scm (joe)[home-page]: Likewise.
* gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise.
* gnu/packages/tv.scm (tvtime)[home-page]: Likewise.
* gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise.
* gnu/packages/upnp.scm (libupnp)[home-page]: Likewise.
* gnu/packages/version-control.scm (cvs)[home-page]: Likewise.
* gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib)
(liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl)
(dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise.
* gnu/packages/virtualization.scm (bochs)[home-page]: Likewise.
* gnu/packages/w3m.scm (w3m)[home-page]: Likewise.
* gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi)
(tidy-html, htmlcxx)[home-page]: Likewise.
* gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise.
* gnu/packages/wv.scm (wv)[home-page]: Likewise.
* gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise.
* gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c)
(opensp)[home-page]: Likewise.
* gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r-- | gnu/packages/cran.scm | 108 |
1 files changed, 54 insertions, 54 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c7a81b96eb..c80e98134a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -534,7 +534,7 @@ by Luis Torgo, published by CRC Press.") "05mv6xhm15b0mq9kzyiblkb14bdqmjrwl64ghdk66il0w8i7p6nh")))) (properties `((upstream-name . "emdist"))) (build-system r-build-system) - (home-page "http://www.rforge.net/emd") + (home-page "https://www.rforge.net/emd") (synopsis "Earth mover's distance") (description "This package provides tools to calculate the Earth Mover's @@ -919,7 +919,7 @@ can read and write both the metadata and the cell data in a Sheet.") (build-system r-build-system) (inputs (list proj-7 zlib)) (native-inputs (list pkg-config)) - (home-page "http://www.rforge.net/proj4/") + (home-page "https://www.rforge.net/proj4/") (synopsis "Simple interface to the PROJ.4 cartographic projections library") (description "This package provides a simple interface to lat/long projection and @@ -1484,7 +1484,7 @@ proposals for count data.") (build-system r-build-system) (propagated-inputs (list r-lattice)) - (home-page "http://zoo.R-Forge.R-project.org/") + (home-page "https://zoo.R-Forge.R-project.org/") (synopsis "S3 infrastructure for regular and irregular time series") (description "This package contains an S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time @@ -1584,7 +1584,7 @@ in good performances with large files.") r-tidyselect)) (native-inputs (list r-knitr)) - (home-page "http://corybrunson.github.io/ggalluvial/") + (home-page "https://corybrunson.github.io/ggalluvial/") (synopsis "Alluvial plots for ggplot2") (description "This package provides alluvial plots for @code{ggplot2}. Alluvial plots use variable-width ribbons and stacked bar plots to represent @@ -1972,7 +1972,7 @@ higher.") (properties `((upstream-name . "OrgMassSpecR"))) (build-system r-build-system) (native-inputs (list r-knitr)) - (home-page "http://OrgMassSpec.github.io/") + (home-page "https://OrgMassSpec.github.io/") (synopsis "Organic or biological mass spectrometry data analysis") (description "This package @code{OrgMassSpecR} is an extension of the @code{R} @@ -2194,7 +2194,7 @@ with default R plot functions.") (list r-colorspace r-scatterplot3d)) (native-inputs (list r-knitr)) - (home-page "http://oompa.r-forge.r-project.org/") + (home-page "https://oompa.r-forge.r-project.org/") (synopsis "Qualitative palettes with many colors") (description "This package provides tools for creating, viewing, and assessing @@ -4768,7 +4768,7 @@ initiative to bring PASSTEC 2000 functionalities to R.") r-mvtnorm r-rpart r-survival)) - (home-page "http://partykit.R-Forge.R-project.org/partykit") + (home-page "https://partykit.R-Forge.R-project.org/partykit") (synopsis "Toolkit for recursive partytioning") (description "This package provides a toolkit with infrastructure for representing, @@ -4937,7 +4937,7 @@ value for each cluster in a dendrogram.") (sha256 (base32 "0inmnmi0pqmbqnl00d5yal1bmd7awigxd7sgzjsil9c1k55f4r8y")))) (build-system r-build-system) - (home-page "http://www.rcpp.org") + (home-page "https://www.rcpp.org") (synopsis "Seamless R and C++ integration") (description "The Rcpp package provides R functions as well as C++ classes which offer @@ -5370,7 +5370,7 @@ any subsequent lookup as it keeps the hash table in memory.") "0krwxq4985x3n5mzx8i9smwpkd5sifbfgy9z7ikwk84734km683j")))) (build-system r-build-system) (propagated-inputs (list r-bit)) - (home-page "http://ff.r-forge.r-project.org/") + (home-page "https://ff.r-forge.r-project.org/") (synopsis "Memory-efficient storage of large data on disk and access functions") (description "This package provides data structures that are stored on disk but @@ -6046,7 +6046,7 @@ classes in the @code{stats4} package.") (build-system r-build-system) (propagated-inputs (list r-bbmle r-coda r-lattice r-mass r-plyr)) - (home-page "http://www.math.mcmaster.ca/bolker/emdbook") + (home-page "https://www.math.mcmaster.ca/bolker/emdbook") (synopsis "Support functions and data for \"Ecological Models and Data\"") (description "This package provides auxiliary functions and data sets for \"Ecological @@ -6125,7 +6125,7 @@ functions from LINPACK.") (list r-mass r-survival)) (native-inputs (list r-knitr)) - (home-page "http://riskassessment.r-forge.r-project.org") + (home-page "https://riskassessment.r-forge.r-project.org") (synopsis "Fitting a parametric distribution from data") (description "This package extends the @code{fitdistr} function of the MASS package @@ -6591,7 +6591,7 @@ interface to @code{PostgreSQL}, a relational database.") "1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1")))) (build-system r-build-system) (propagated-inputs (list r-lpsolve)) - (home-page "http://linprog.r-forge.r-project.org/") + (home-page "https://linprog.r-forge.r-project.org/") (synopsis "Linear programming and optimization") (description "This package can be used to solve Linear Programming / Linear @@ -6612,7 +6612,7 @@ Optimization problems by using the simplex algorithm.") (build-system r-build-system) (propagated-inputs (list r-magic r-linprog r-lpsolve r-rcpp r-rcppprogress)) - (home-page "http://geometry.r-forge.r-project.org/") + (home-page "https://geometry.r-forge.r-project.org/") (synopsis "Mesh generator and surface tessellator") (description "This package makes the qhull library available in R, in a similar manner @@ -7644,7 +7644,7 @@ phylogenies and ancestral character states.") "0vc2is1hf1g0sw92kzl8mddck264qwiqgm5q2wkcwwz65fss7mkf")))) (build-system r-build-system) (propagated-inputs (list r-proxy)) - (home-page "http://dtw.r-forge.r-project.org/") + (home-page "https://dtw.r-forge.r-project.org/") (synopsis "Dynamic Time Warping Algorithms") (description "This package provides a comprehensive implementation of @dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the @@ -10280,7 +10280,7 @@ stored data and compression with the LZ4 and ZSTD compressors.") (properties `((upstream-name . "fst"))) (build-system r-build-system) (propagated-inputs (list r-fstcore r-rcpp)) - (home-page "http://www.fstpackage.org") + (home-page "https://www.fstpackage.org") (synopsis "Fast serialization of data frames") (description "The fst package for R provides a fast, easy and flexible way to @@ -11359,7 +11359,7 @@ functions.") (list jags)) (native-inputs (list pkg-config)) - (home-page "http://mcmc-jags.sourceforge.net") + (home-page "https://mcmc-jags.sourceforge.net") (synopsis "Bayesian graphical models using MCMC") (description "This package provides an R interface to the JAGS MCMC library. JAGS is @@ -12480,7 +12480,7 @@ through permutation testing.") (list r-igraph r-network)) (native-inputs (list r-knitr)) - (home-page "http://mbojan.github.io/intergraph") + (home-page "https://mbojan.github.io/intergraph") (synopsis "Coercion routines for network data objects") (description "Functions implemented in this package allow coercing (i.e. convert) @@ -12830,7 +12830,7 @@ data with multiple data types.") (build-system r-build-system) (propagated-inputs (list r-kernsmooth)) - (home-page "http://qualV.R-Forge.R-Project.org/") + (home-page "https://qualV.R-Forge.R-Project.org/") (synopsis "Qualitative Validation Methods") (description "This package provides qualitative methods for the validation of dynamic @@ -12891,7 +12891,7 @@ subsequence} (LCS) using a dynamic programming algorithm.") r-vctrs)) (native-inputs (list r-knitr)) - (home-page "http://larmarange.github.io/labelled/") + (home-page "https://larmarange.github.io/labelled/") (synopsis "Manipulating labelled data") (description "This package provides useful functions to deal with the @@ -13608,7 +13608,7 @@ console, resulting in an interactive editing environment.") r-mitools r-numderiv r-survival)) - (home-page "http://r-survey.r-forge.r-project.org/survey/") + (home-page "https://r-survey.r-forge.r-project.org/survey/") (synopsis "Analysis of complex survey samples") (description "This package provides tools for the analysis of complex survey samples. @@ -14109,7 +14109,7 @@ and permutation inference in the framework of Strasser and Weber (1999).") r-multcomp r-mvtnorm r-survival)) - (home-page "http://coin.r-forge.r-project.org") + (home-page "https://coin.r-forge.r-project.org") (synopsis "Conditional inference procedures in a permutation test framework") (description "This package provides conditional inference procedures for the general @@ -15747,7 +15747,7 @@ al. (2010) <DOI:10.1016/j.neuroimage.2010.04.241>, Tabelow and Polzehl (2011) (base32 "082qj08kzyzwvjacwq0sl3xxdx6iz5hgx6q24jv1mnvx7z5xn5ry")))) (build-system r-build-system) - (home-page "http://minato.sip21c.org/msb/") + (home-page "https://minato.sip21c.org/msb/") (synopsis "Functions for medical statistics book with demographic data") (description "This package provides several utility functions for the book entitled @@ -16050,7 +16050,7 @@ Processing.") (build-system r-build-system) (propagated-inputs (list r-bh r-nlp r-rcpp r-slam r-xml2)) - (home-page "http://tm.r-forge.r-project.org/") + (home-page "https://tm.r-forge.r-project.org/") (synopsis "Text mining package") (description "This package provides a framework for text mining applications within R.") @@ -16411,7 +16411,7 @@ structure of any data type.") (base32 "028fw61n61i79fhnaqx7gmdifdpbvp3yiaq9vvfrbv4k7i84r83i")))) (build-system r-build-system) - (home-page "http://strimmerlab.org/software/corpcor/") + (home-page "https://strimmerlab.org/software/corpcor/") (synopsis "Efficient estimation of covariance and (partial) correlation") (description "This package implements a James-Stein-type shrinkage estimator for the @@ -17177,7 +17177,7 @@ limitations\" using the GNU Multiple Precision library.") (list r-gmp)) (native-inputs (list pkg-config)) - (home-page "http://rmpfr.r-forge.r-project.org/") + (home-page "https://rmpfr.r-forge.r-project.org/") (synopsis "R bindings to the MPFR library") (description "This package supports arithmetic (via S4 classes and methods) for @@ -17708,7 +17708,7 @@ covariance functions for large data sets.") (build-system r-build-system) (propagated-inputs (list r-fields r-maps)) - (home-page "http://spatialextremes.r-forge.r-project.org/") + (home-page "https://spatialextremes.r-forge.r-project.org/") (synopsis "Modelling spatial extremes") (description "This package provides tools for the statistical modelling of spatial @@ -17902,7 +17902,7 @@ covariates of each feature, making the downstream analysis easy.") "046w3xbr535c5jyd68adv42a7limxp1mv57b5w6w673w707lmw2p")))) (build-system r-build-system) (propagated-inputs (list r-corpcor)) - (home-page "http://strimmerlab.org/software/longitudinal/") + (home-page "https://strimmerlab.org/software/longitudinal/") (synopsis "Analysis of multiple time course data") (description "This package contains general data structures and functions for @@ -17926,7 +17926,7 @@ dynamical correlation and dynamical covariance.") (build-system r-build-system) (propagated-inputs (list r-corpcor r-fdrtool r-longitudinal)) - (home-page "http://strimmerlab.org/software/genenet/") + (home-page "https://strimmerlab.org/software/genenet/") (synopsis "Modeling and inferring gene networks") (description "This package analyzes gene expression (time series) data with focus on @@ -18720,7 +18720,7 @@ identifying outliers.") (propagated-inputs (list r-rcpp r-rcpparmadillo)) (native-inputs (list r-knitr)) - (home-page "http://www.perossi.org/home/bsm-1") + (home-page "https://www.perossi.org/home/bsm-1") (synopsis "Bayesian inference for marketing/micro-econometrics") (description "This package covers many important models used in marketing and @@ -19787,7 +19787,7 @@ barplots or heatmaps.") (list r-ade4 r-segmented)) (inputs (list zlib)) - (home-page "http://seqinr.r-forge.r-project.org/") + (home-page "https://seqinr.r-forge.r-project.org/") (synopsis "Biological sequences retrieval and analysis") (description "This package provides tools for exploratory data analysis and data @@ -21573,7 +21573,7 @@ repository.") (build-system r-build-system) (propagated-inputs (list r-kernsmooth r-mass)) - (home-page "http://mpm.r-forge.r-project.org") + (home-page "https://mpm.r-forge.r-project.org") (synopsis "Multivariate projection methods") (description "This is a package for exploratory graphical analysis of multivariate @@ -22212,7 +22212,7 @@ Row} (CSR) format.") r-stringi)) (native-inputs (list r-knitr)) - (home-page "http://text2vec.org") + (home-page "https://text2vec.org") (synopsis "Text mining framework for R") (description "This package provides fast and memory-friendly tools for text @@ -23594,7 +23594,7 @@ effect size.") (list r-sp)) (native-inputs (list pkg-config r-knitr)) - (home-page "http://rgdal.r-forge.r-project.org") + (home-page "https://rgdal.r-forge.r-project.org") (synopsis "Bindings for the Geospatial Data Abstraction Library") (description "This package provides bindings to the Geospatial Data Abstraction @@ -25276,7 +25276,7 @@ transcription, ...") (list libsndfile)) (propagated-inputs (list r-tuner)) - (home-page "http://rug.mnhn.fr/seewave") + (home-page "https://rug.mnhn.fr/seewave") (synopsis "Sound analysis and synthesis") (description "This package provides functions for analysing, manipulating, displaying, @@ -25846,7 +25846,7 @@ R.") r-locfit r-rcolorbrewer)) (native-inputs (list gfortran)) - (home-page "http://pkg.robjhyndman.com/hdrcde") + (home-page "https://pkg.robjhyndman.com/hdrcde") (synopsis "Highest density regions and conditional density estimation") (description "This is a package for the computation of highest density regions in one @@ -26632,7 +26632,7 @@ different conceptual parts of the algorithm.") (build-system r-build-system) (propagated-inputs (list r-mass r-minpack-lm r-rgl r-scatterplot3d)) - (home-page "http://www.maths.nottingham.ac.uk/~ild/shapes") + (home-page "https://www.maths.nottingham.ac.uk/~ild/shapes") (synopsis "Statistical shape analysis") (description "This package provides routines for the statistical analysis of landmark @@ -26748,7 +26748,7 @@ statistical shape analysis and archetypal analysis.") (propagated-inputs (list r-bh r-rcpp)) - (home-page "http://dirk.eddelbuettel.com/code/anytime.html") + (home-page "https://dirk.eddelbuettel.com/code/anytime.html") (synopsis "Converter of input to POSIXct or Date") (description "The package converts the input in any one of character, integer, numeric, @@ -27689,7 +27689,7 @@ Gibbs sampling by Xuan-Hieu Phan and co-authors.") r-rcpparmadillo r-slam r-stringr)) - (home-page "http://www.structuraltopicmodel.com/") + (home-page "https://www.structuraltopicmodel.com/") (synopsis "Estimation of the Structural Topic Model") (description "The @dfn{Structural Topic Model} (STM) allows researchers to estimate @@ -28196,7 +28196,7 @@ model objects and help reduce the size of model objects saved to disk.") (build-system r-build-system) (propagated-inputs (list r-plyr r-rjson r-whisker)) - (home-page "http://christophergandrud.github.io/d3Network/") + (home-page "https://christophergandrud.github.io/d3Network/") (synopsis "Create D3 JavaScript network, tree, dendrogram, and Sankey graphs") (description "This package is intended to make it easy to create D3 JavaScript @@ -28329,7 +28329,7 @@ well as Ravand and Robitzsch (2015).") (build-system r-build-system) (propagated-inputs (list r-cdm r-rcpp r-rcpparmadillo)) - (home-page "http://www.edmeasurementsurveys.com/TAM/Tutorials/") + (home-page "https://www.edmeasurementsurveys.com/TAM/Tutorials/") (synopsis "Test analysis modules") (description "This package includes tools for marginal maximum likelihood estimation @@ -29942,7 +29942,7 @@ permuted copies (shadows).") (list r-quadprog)) (native-inputs (list r-knitr)) - (home-page "http://directlabels.r-forge.r-project.org/") + (home-page "https://directlabels.r-forge.r-project.org/") (synopsis "Direct labels for multicolor plots") (description "This package provides an extensible framework for automatically placing @@ -30543,7 +30543,7 @@ Kolmogorov-Smirnov, ANOVA) are also supported.") (properties `((upstream-name . "spatstat.utils"))) (build-system r-build-system) - (home-page "http://www.spatstat.org") + (home-page "https://www.spatstat.org") (synopsis "Utility functions for spatstat") (description "This package contains utility functions for the @code{spatstat} package @@ -30566,7 +30566,7 @@ which may also be useful for other purposes.") (build-system r-build-system) (propagated-inputs (list r-abind r-matrix r-spatstat-utils r-tensor)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Sparse three-dimensional arrays and linear algebra utilities") (description "This package defines sparse three-dimensional arrays and supports @@ -30589,7 +30589,7 @@ matrix calculations that are common in statistics, such as quadratic forms.") (build-system r-build-system) (propagated-inputs (list r-matrix r-spatstat-utils)) - (home-page "http://www.spatstat.org") + (home-page "https://www.spatstat.org") (synopsis "Datasets for spatstat") (description "This package contains all the datasets for the @code{spatstat} @@ -30611,7 +30611,7 @@ package.") (build-system r-build-system) (propagated-inputs (list r-deldir r-polyclip r-spatstat-data r-spatstat-utils)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Geometrical functionality of the spatstat package") (description "This is a subset of the original spatstat package, containing the @@ -30645,7 +30645,7 @@ for the geometry of linear networks.") r-spatstat-sparse r-spatstat-utils r-tensor)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Core functionality of the spatstat package") (description "This is a subset of the original spatstat package, containing all of the @@ -30675,7 +30675,7 @@ user-level code from spatstat, except for the code for linear networks.") r-spatstat-random r-spatstat-sparse r-spatstat-utils)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Linear networks functionality of the spatstat package") (description "This is a subset of the spatstat package, containing its functionality @@ -30695,7 +30695,7 @@ for spatial data on a linear network.") (properties `((upstream-name . "spatstat.random"))) (build-system r-build-system) (propagated-inputs (list r-spatstat-data r-spatstat-geom r-spatstat-utils)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Random Generation Functionality for the 'spatstat' Family") (description "This package provides functionality for random generation of spatial @@ -30727,7 +30727,7 @@ sampler).") (list r-spatstat-data r-spatstat-explore r-spatstat-geom r-spatstat-linnet r-spatstat-model r-spatstat-random r-spatstat-utils)) - (home-page "http://www.spatstat.org") + (home-page "https://www.spatstat.org") (synopsis "Spatial Point Pattern analysis, model-fitting, simulation, tests") (description "This package provides a comprehensive toolbox for analysing Spatial @@ -30803,7 +30803,7 @@ semantics and supports interaction with @code{ALTREP} vectors.") (properties `((upstream-name . "RcppTOML"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) - (home-page "http://dirk.eddelbuettel.com/code/rcpp.toml.html") + (home-page "https://dirk.eddelbuettel.com/code/rcpp.toml.html") (synopsis "Rcpp bindings to TOML parser") (description "The TOML configuration format specifies an excellent format suitable for @@ -32468,7 +32468,7 @@ this variability problem can be overcome.") "1kdnm5ilfn5fclry3f1d518761hykrqgjhv69kc881r2fpcfa1lv")))) (properties `((upstream-name . "MLEcens"))) (build-system r-build-system) - (home-page "http://stat.ethz.ch/~maathuis/") + (home-page "https://stat.ethz.ch/~maathuis/") (synopsis "Computation of the MLE for bivariate (interval) censored data") (description "This package contains functions to compute the nonparametric @@ -32786,7 +32786,7 @@ other R users.") r-spatstat-geom r-tibble r-uwot)) - (home-page "http://www.satijalab.org/seurat") + (home-page "https://www.satijalab.org/seurat") (synopsis "Seurat is an R toolkit for single cell genomics") (description "This package is an R package designed for QC, analysis, and @@ -36132,7 +36132,7 @@ large datasets.") r-mass r-nnet r-randomforest)) - (home-page "http://www.sciviews.org/zooimage") + (home-page "https://www.sciviews.org/zooimage") (synopsis "Machine learning algorithms with unified interface") (description "This package provides a unified interface to various machine learning @@ -36165,7 +36165,7 @@ algorithms. Confusion matrices are provided too.") r-svdialogs r-svmisc r-tiff)) - (home-page "http://www.sciviews.org/zooimage") + (home-page "https://www.sciviews.org/zooimage") (synopsis "Analysis of numerical plankton images") (description "This package provides a solution for analyzing digital images of |