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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-05-29 00:18:48 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-05-29 00:18:48 +0200 |
| commit | add551f651cf6c2359baf5493c7a9d920b7d511d (patch) | |
| tree | 465ed51455a2d2112d5ba729e59dbea24fbe2914 /gnu/packages/bioinformatics.scm | |
| parent | 66bfe558481a2431810d7a2d2436d06d6f8daab7 (diff) | |
| download | guix-add551f651cf6c2359baf5493c7a9d920b7d511d.tar guix-add551f651cf6c2359baf5493c7a9d920b7d511d.tar.gz | |
gnu: pigx-chipseq: Fix build.
* gnu/packages/bioinformatics.scm (pigx-chipseq)[arguments]: Patch build
system.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 239a8c13df..ced3b642e9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11094,6 +11094,15 @@ expression report comparing samples in an easily configurable manner.") (modify-phases %standard-phases (add-before 'bootstrap 'autoreconf (lambda _ + ;; This was fixed in commit + ;; 0b1c9f7f2e4d0ff601f1de95ab8b2953f4d5dbc7, but there is no + ;; release with this fix. + (call-with-output-file "VERSION" + (lambda (port) (display ,version port))) + ;; See https://github.com/BIMSBbioinfo/pigx_chipseq/issues/176 + (substitute* "m4/ax_r_package.m4" + (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)") + "if(system.file(package=\"PKG\") == \"\")")) (invoke "autoreconf" "-vif"))) (add-before 'configure 'set-PYTHONPATH (lambda _ |