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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-07-27 15:13:56 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-07-27 15:30:38 +0200 |
| commit | ed2dfe3955f0144bc858c66fdb751f51e9bd84fe (patch) | |
| tree | 5e8fdebcf590d21cc62db8400426e93dd44405dc /gnu/packages/bioinformatics.scm | |
| parent | 269f100330cf92afdc911bbd7db0644719d6dc3f (diff) | |
| download | guix-ed2dfe3955f0144bc858c66fdb751f51e9bd84fe.tar guix-ed2dfe3955f0144bc858c66fdb751f51e9bd84fe.tar.gz | |
gnu: Add snakemake-4.
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 73cca16717..bb0e8c73c7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12837,7 +12837,7 @@ once. This package provides tools to perform Drop-seq analyses.") #t))))) (inputs `(("gzip" ,gzip) - ("snakemake" ,snakemake) + ("snakemake" ,snakemake-4) ("fastqc" ,fastqc) ("multiqc" ,multiqc) ("star" ,star) @@ -12931,7 +12931,7 @@ expression report comparing samples in an easily configurable manner.") ("fastqc" ,fastqc) ("bowtie" ,bowtie) ("idr" ,idr) - ("snakemake" ,snakemake) + ("snakemake" ,snakemake-4) ("samtools" ,samtools) ("bedtools" ,bedtools) ("kentutils" ,kentutils))) @@ -12992,7 +12992,7 @@ in an easily configurable manner.") ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1) ("python-wrapper" ,python-wrapper) ("python-pyyaml" ,python-pyyaml) - ("snakemake" ,snakemake) + ("snakemake" ,snakemake-4) ("bismark" ,bismark) ("fastqc" ,fastqc) ("bowtie" ,bowtie) @@ -13041,7 +13041,7 @@ methylation and segmentation.") ("python-loompy" ,python-loompy) ("ghc-pandoc" ,ghc-pandoc-1) ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1) - ("snakemake" ,snakemake) + ("snakemake" ,snakemake-4) ("star" ,star) ("r-minimal" ,r-minimal) ("r-argparser" ,r-argparser) |