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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 17:18:47 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 23:32:44 +0100 |
| commit | 4272000661f61969e1fe64d950e593eb56642a36 (patch) | |
| tree | 58b97b97ca52fac5868924413931e70d2ca77027 /gnu/packages/bioinformatics.scm | |
| parent | 794ff347a9ce8e5766994513b738941f9028f98a (diff) | |
| download | guix-4272000661f61969e1fe64d950e593eb56642a36.tar guix-4272000661f61969e1fe64d950e593eb56642a36.tar.gz | |
gnu: Add r-gviz.
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8285350887..90892f1903 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10034,6 +10034,52 @@ interpretation of members of a collection of association statistics on a family of feature/genome hypotheses.") (license license:artistic2.0))) +(define-public r-gviz + (package + (name "r-gviz") + (version "1.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Gviz" version)) + (sha256 + (base32 + "1lrw65a8426wpxw975wjcaiacpp6fqa00nif1yxigyankbfs23c8")))) + (properties `((upstream-name . "Gviz"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biomart" ,r-biomart) + ("r-biostrings" ,r-biostrings) + ("r-biovizbase" ,r-biovizbase) + ("r-bsgenome" ,r-bsgenome) + ("r-digest" ,r-digest) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-lattice" ,r-lattice) + ("r-latticeextra" ,r-latticeextra) + ("r-matrixstats" ,r-matrixstats) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-xvector" ,r-xvector))) + (home-page "https://bioconductor.org/packages/Gviz") + (synopsis "Plotting data and annotation information along genomic coordinates") + (description + "Genomic data analyses requires integrated visualization of known genomic +information and new experimental data. Gviz uses the biomaRt and the +rtracklayer packages to perform live annotation queries to Ensembl and UCSC +and translates this to e.g. gene/transcript structures in viewports of the +grid graphics package. This results in genomic information plotted together +with your data.") + (license license:artistic2.0))) + (define-public r-qvalue (package (name "r-qvalue") |