aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorLudovic Courtès <ludo@gnu.org>2015-02-27 14:40:21 +0100
committerLudovic Courtès <ludo@gnu.org>2015-02-27 15:08:37 +0100
commitda6dd842d038aa0761918305953ad92951fb663f (patch)
tree0f3642682b8768306b9ebb8c94d4abf790aaf23c /gnu/packages/bioinformatics.scm
parente8c9f0498f9f3ead4ea345d49f1c5e630ff158f8 (diff)
downloadguix-da6dd842d038aa0761918305953ad92951fb663f.tar
guix-da6dd842d038aa0761918305953ad92951fb663f.tar.gz
gnu: Remove now unneeded 'unpack' phases for unzip.
This is a followup to commit cd0385b. * gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove 'unpack' phase. * gnu/packages/image.scm (freeimage): Likewise. * gnu/packages/python.scm (python2-cssutils): Likewise.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm53
1 files changed, 24 insertions, 29 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b64dab73cd..dbafd94c2f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -265,35 +265,30 @@ Illumina, Roche 454, and the SOLiD platform.")
'()
'("POPCNT_CAPABILITY=0")))
#:phases
- (alist-replace
- 'unpack
- (lambda* (#:key source #:allow-other-keys)
- (and (zero? (system* "unzip" source))
- (chdir "hisat-0.1.4-beta")))
- (alist-cons-after
- 'unpack 'patch-sources
- (lambda _
- ;; XXX Cannot use snippet because zip files are not supported
- (substitute* "Makefile"
- (("^CC = .*$") "CC = gcc")
- (("^CPP = .*$") "CPP = g++")
- ;; replace BUILD_HOST and BUILD_TIME for deterministic build
- (("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"")
- (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\""))
- (substitute* '("hisat-build" "hisat-inspect")
- (("/usr/bin/env") (which "env"))))
- (alist-replace
- 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
- (mkdir-p bin)
- (for-each
- (lambda (file)
- (copy-file file (string-append bin file)))
- (find-files
- "."
- "hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$"))))
- (alist-delete 'configure %standard-phases))))))
+ (alist-cons-after
+ 'unpack 'patch-sources
+ (lambda _
+ ;; XXX Cannot use snippet because zip files are not supported
+ (substitute* "Makefile"
+ (("^CC = .*$") "CC = gcc")
+ (("^CPP = .*$") "CPP = g++")
+ ;; replace BUILD_HOST and BUILD_TIME for deterministic build
+ (("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"")
+ (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\""))
+ (substitute* '("hisat-build" "hisat-inspect")
+ (("/usr/bin/env") (which "env"))))
+ (alist-replace
+ 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
+ (mkdir-p bin)
+ (for-each
+ (lambda (file)
+ (copy-file file (string-append bin file)))
+ (find-files
+ "."
+ "hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$"))))
+ (alist-delete 'configure %standard-phases)))))
(native-inputs
`(("unzip" ,unzip)))
(inputs