aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorRoel Janssen <roel@gnu.org>2017-11-29 12:46:17 +0100
committerRoel Janssen <roel@gnu.org>2017-11-29 12:46:17 +0100
commitefa6a1ddb57d8a949484ba828effab4c59374f09 (patch)
tree5720ead98505628b92203599170f265c52a2ce33 /gnu/packages/bioinformatics.scm
parent94989d4baee8c7e02f7f39256be559e2d653ad4a (diff)
downloadguix-efa6a1ddb57d8a949484ba828effab4c59374f09.tar
guix-efa6a1ddb57d8a949484ba828effab4c59374f09.tar.gz
gnu: Add r-copynumber.
* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 833376ac21..923100b7ba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5909,6 +5909,29 @@ data types as well.")
microarrays.")
(license license:artistic2.0)))
+(define-public r-copynumber
+ (package
+ (name "r-copynumber")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "copynumber" version))
+ (sha256
+ (base32
+ "01kcwzl485yjrkgyg8117b1il957ss0v6rq4bbxf4ksd5fzcjmyx"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-s4vectors" ,r-s4vectors)
+ ("r-iranges" ,r-iranges)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://bioconductor.org/packages/copynumber")
+ (synopsis "Segmentation of single- and multi-track copy number data")
+ (description
+ "This package segments single- and multi-track copy number data by a
+penalized least squares regression method.")
+ (license license:artistic2.0)))
+
(define-public r-geneplotter
(package
(name "r-geneplotter")