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authorRicardo Wurmus <rekado@elephly.net>2016-11-24 15:22:03 +0100
committerRicardo Wurmus <rekado@elephly.net>2016-11-28 22:43:17 +0100
commitc827f2028629c43f73aee99600d34fc97fca4208 (patch)
tree2622ce6cc75f28ec210c00cf437ab029a77fb8ff /gnu/packages/bioinformatics.scm
parent1571f90e3520b3b606078cdb1e92291a638da15f (diff)
downloadguix-c827f2028629c43f73aee99600d34fc97fca4208.tar
guix-c827f2028629c43f73aee99600d34fc97fca4208.tar.gz
gnu: Add r-chipkernels.
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm36
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0b10b1b6e7..73e1d09b89 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7577,6 +7577,42 @@ modules to sample traits. It also includes a number of utility functions for
data manipulation and visualization.")
(license license:gpl2+)))
+(define-public r-chipkernels
+ (let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")
+ (revision "1"))
+ (package
+ (name "r-chipkernels")
+ (version (string-append "1.1-" revision "." (string-take commit 9)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ManuSetty/ChIPKernels.git")
+ (commit commit)))
+ (file-name (string-append name "-" version))
+ (sha256
+ (base32
+ "14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-iranges" ,r-iranges)
+ ("r-xvector" ,r-xvector)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-gtools" ,r-gtools)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-sfsmisc" ,r-sfsmisc)
+ ("r-kernlab" ,r-kernlab)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://github.com/ManuSetty/ChIPKernels")
+ (synopsis "Build string kernels for DNA Sequence analysis")
+ (description "ChIPKernels is an R package for building different string
+kernels used for DNA Sequence analysis. A dictionary of the desired kernel
+must be built and this dictionary can be used for determining kernels for DNA
+Sequences.")
+ (license license:gpl2+))))
+
(define-public emboss
(package
(name "emboss")