aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2018-10-21 11:54:44 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-10-21 23:06:45 +0200
commit9a6808e0c00d6acb00b7be4aa573f252fa7d9635 (patch)
tree4207f7aebf11479910ac902b24741d5cce6f6734 /gnu/packages/bioinformatics.scm
parentf7618bf18e00f6ece8e886f2fc6328314d1ed544 (diff)
downloadguix-9a6808e0c00d6acb00b7be4aa573f252fa7d9635.tar
guix-9a6808e0c00d6acb00b7be4aa573f252fa7d9635.tar.gz
gnu: tophat: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1. * gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm7
1 files changed, 3 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1e04081ceb..0dc81c8f61 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1332,7 +1332,7 @@ gapped, local, and paired-end alignment modes.")
(define-public tophat
(package
(name "tophat")
- (version "2.1.0")
+ (version "2.1.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1340,13 +1340,12 @@ gapped, local, and paired-end alignment modes.")
version ".tar.gz"))
(sha256
(base32
- "168zlzykq622zbgkh90a90f1bdgsxkscq2zxzbj8brq80hbjpyp7"))
- (patches (search-patches "tophat-build-with-later-seqan.patch"))
+ "19add02kv2xhd6ihd779dr7x35ggym3jqr0m5c4315i1yfb0p11p"))
(modules '((guix build utils)))
(snippet
'(begin
;; Remove bundled SeqAn and samtools
- (delete-file-recursively "src/SeqAn-1.3")
+ (delete-file-recursively "src/SeqAn-1.4.2")
(delete-file-recursively "src/samtools-0.1.18")
#t))))
(build-system gnu-build-system)