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| author | Ludovic Courtès <ludo@gnu.org> | 2015-02-27 14:40:21 +0100 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2015-02-27 15:08:37 +0100 |
| commit | da6dd842d038aa0761918305953ad92951fb663f (patch) | |
| tree | 0f3642682b8768306b9ebb8c94d4abf790aaf23c /gnu/packages/bioinformatics.scm | |
| parent | e8c9f0498f9f3ead4ea345d49f1c5e630ff158f8 (diff) | |
| download | guix-da6dd842d038aa0761918305953ad92951fb663f.tar guix-da6dd842d038aa0761918305953ad92951fb663f.tar.gz | |
gnu: Remove now unneeded 'unpack' phases for unzip.
This is a followup to commit cd0385b.
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove 'unpack'
phase.
* gnu/packages/image.scm (freeimage): Likewise.
* gnu/packages/python.scm (python2-cssutils): Likewise.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 53 |
1 files changed, 24 insertions, 29 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b64dab73cd..dbafd94c2f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -265,35 +265,30 @@ Illumina, Roche 454, and the SOLiD platform.") '() '("POPCNT_CAPABILITY=0"))) #:phases - (alist-replace - 'unpack - (lambda* (#:key source #:allow-other-keys) - (and (zero? (system* "unzip" source)) - (chdir "hisat-0.1.4-beta"))) - (alist-cons-after - 'unpack 'patch-sources - (lambda _ - ;; XXX Cannot use snippet because zip files are not supported - (substitute* "Makefile" - (("^CC = .*$") "CC = gcc") - (("^CPP = .*$") "CPP = g++") - ;; replace BUILD_HOST and BUILD_TIME for deterministic build - (("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"") - (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\"")) - (substitute* '("hisat-build" "hisat-inspect") - (("/usr/bin/env") (which "env")))) - (alist-replace - 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) - (mkdir-p bin) - (for-each - (lambda (file) - (copy-file file (string-append bin file))) - (find-files - "." - "hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$")))) - (alist-delete 'configure %standard-phases)))))) + (alist-cons-after + 'unpack 'patch-sources + (lambda _ + ;; XXX Cannot use snippet because zip files are not supported + (substitute* "Makefile" + (("^CC = .*$") "CC = gcc") + (("^CPP = .*$") "CPP = g++") + ;; replace BUILD_HOST and BUILD_TIME for deterministic build + (("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"") + (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\"")) + (substitute* '("hisat-build" "hisat-inspect") + (("/usr/bin/env") (which "env")))) + (alist-replace + 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) + (mkdir-p bin) + (for-each + (lambda (file) + (copy-file file (string-append bin file))) + (find-files + "." + "hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$")))) + (alist-delete 'configure %standard-phases))))) (native-inputs `(("unzip" ,unzip))) (inputs |