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| author | Leo Famulari <leo@famulari.name> | 2016-10-05 19:15:25 -0400 |
|---|---|---|
| committer | Leo Famulari <leo@famulari.name> | 2016-10-05 19:15:25 -0400 |
| commit | b19c7989b770f47011cd531a13c89002374dc3e0 (patch) | |
| tree | ca0dccd3a677d4ac5237de87c9f78c31dbdaf148 /gnu/packages/bioinformatics.scm | |
| parent | 6524c1cfcf6088c5574e6ff21f540dfb22f944bf (diff) | |
| parent | 145947608905d36f31227e87bebd7ed3a922e910 (diff) | |
| download | guix-b19c7989b770f47011cd531a13c89002374dc3e0.tar guix-b19c7989b770f47011cd531a13c89002374dc3e0.tar.gz | |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 18 insertions, 13 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cf20057bcd..ac46fe4bcc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3221,18 +3221,23 @@ form of assemblies or reads.") license:cpl1.0)))) ; Open Bloom Filter (define-public metabat - (package - (name "metabat") - (version "0.26.3") - (source (origin - (method url-fetch) - (uri (string-append - "https://bitbucket.org/berkeleylab/metabat/get/" - version ".tar.bz2")) - (file-name (string-append name "-" version ".tar.bz2")) - (sha256 - (base32 - "1vpfvgsn8wdsv1g7z73zxcncskx7dy7bw5msg1hhibk25ay11pyg")))) + ;; We package from a git commit because compilation of the released version + ;; fails. + (let ((commit "cbdca756993e66ae57e50a27970595dda9cbde1b")) + (package + (name "metabat") + (version (string-append "0.32.4-1." (string-take commit 8))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://bitbucket.org/berkeleylab/metabat.git") + (commit commit))) + (file-name (string-append name "-" version)) + (sha256 + (base32 + "0byia8nsip6zvc4ha0qkxkxxyjf4x7jcvy48q2dvb0pzr989syzr")) + (patches (search-patches "metabat-remove-compilation-date.patch")))) (build-system gnu-build-system) (arguments `(#:phases @@ -3299,7 +3304,7 @@ enables the study of individual organisms and their interactions. MetaBAT is an automated metagenome binning software, which integrates empirical probabilistic distances of genome abundance and tetranucleotide frequency.") (license (license:non-copyleft "file://license.txt" - "See license.txt in the distribution.")))) + "See license.txt in the distribution."))))) (define-public minced (package |