aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2021-12-08 13:16:54 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-12-08 14:31:54 +0100
commit1f63c46a1caae562d1745a400956d169af090339 (patch)
tree36352f55768d52c5b93d8b44043274686a81ffb2 /gnu/packages/bioinformatics.scm
parent1f7c06965c6b7707bb3d7ca0c2da606c11e53ee0 (diff)
downloadguix-1f63c46a1caae562d1745a400956d169af090339.tar
guix-1f63c46a1caae562d1745a400956d169af090339.tar.gz
gnu: tbsp: Update to 1.0.0-2.dc30c03.
* gnu/packages/bioinformatics.scm (tbsp): Update to 1.0.0-2.dc30c03. [arguments]: Relax requirement on matplot. This may turn out to be a mistake. [inputs]: Replace python-biopython with python-biopython-1.73.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm17
1 files changed, 12 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 90f26be249..de15f0a135 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13946,8 +13946,8 @@ and reflect the fast5 file schema, and tools to convert between
(license license:mpl2.0)))
(define-public tbsp
- (let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907")
- (revision "1"))
+ (let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41")
+ (revision "2"))
(package
(name "tbsp")
(version (git-version "1.0.0" revision commit))
@@ -13960,15 +13960,22 @@ and reflect the fast5 file schema, and tools to convert between
(file-name (git-file-name name version))
(sha256
(base32
- "025ym14x8gbd6hb55lsinqj6f5qzw36i10klgs7ldzxxd7s39ki1"))))
+ "1im0bik2hxkcb7jzkcxp5nqb30hd8lfraxml6i5ik52j6z3qqln1"))))
(build-system python-build-system)
- (arguments '(#:tests? #f)) ; no tests included
+ (arguments
+ '(#:tests? #f ; no tests included
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.py"
+ ((", <3.0") ""))))))) ; matplotlib
(inputs
`(("python-matplotlib" ,python-matplotlib)
("python-networkx" ,python-networkx)
("python-numpy" ,python-numpy)
("python-pybigwig" ,python-pybigwig)
- ("python-biopython" ,python-biopython)
+ ("python-biopython" ,python-biopython-1.73)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)))
(home-page "https://github.com/phoenixding/tbsp/")