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authorRicardo Wurmus <rekado@elephly.net>2022-09-21 10:54:56 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-09-21 11:09:46 +0200
commitaf663c9e48d4058c2fdf91229942c67ca20ae8b6 (patch)
tree5c52ebe56112e7b19f8414ea6e152242aabed3ea /gnu/packages/bioinformatics.scm
parent6ad4d74acab1032fdb217fe7155d7a6535265e6e (diff)
downloadguix-af663c9e48d4058c2fdf91229942c67ca20ae8b6.tar
guix-af663c9e48d4058c2fdf91229942c67ca20ae8b6.tar.gz
gnu: Add r-gchain.
* gnu/packages/bioinformatics.scm (r-gchain): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cfae6731c4..3271b0fc6d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7375,6 +7375,40 @@ BAM files.")
file formats, and ffTrack objects in multi-track panels.")
(license license:gpl2))))
+(define-public r-gchain
+ (let ((commit "dc393e8dd0d8efaf36270c04d7112db8553db36a")
+ (revision "1"))
+ (package
+ (name "r-gchain")
+ (version (git-version "0.2.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mskilab/gChain/")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "105wgi5w2fhwq1grsvj6zjigwg0sny3z7zr577q8ki3qffjwdkj0"))))
+ (properties `((upstream-name . "gChain")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bamutils
+ r-biostrings
+ r-data-table
+ r-genomicalignments
+ r-genomicranges
+ r-gtrack
+ r-gutils
+ r-matrix
+ r-rtracklayer))
+ (home-page "https://github.com/mskilab/gChain/")
+ (synopsis "Additional capabilities and speed for GenomicRanges operations")
+ (description
+ "This R package provides additional capabilities and speed for
+GenomicRanges operations.")
+ (license license:gpl2))))
+
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))