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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 12:41:59 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 12:41:59 +0200 |
| commit | 93c97bfffba7ca0126c03967fbe058354e24f84d (patch) | |
| tree | 67f53172efec753d4e5813c8b3da9fe3488b30e3 /gnu/packages/bioinformatics.scm | |
| parent | 6e54ce9ca9b172189ab46eb14147304ff9cfa35b (diff) | |
| download | guix-93c97bfffba7ca0126c03967fbe058354e24f84d.tar guix-93c97bfffba7ca0126c03967fbe058354e24f84d.tar.gz | |
gnu: pigx-bsseq: Update to 0.1.7.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.7.
[source]: Remove patch.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove automake and autoconf.
* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 3 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f2800d3163..92d92e7d02 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10608,7 +10608,7 @@ in an easily configurable manner.") (define-public pigx-bsseq (package (name "pigx-bsseq") - (version "0.1.6") + (version "0.1.7") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_bsseq/" @@ -10616,8 +10616,7 @@ in an easily configurable manner.") "/pigx_bsseq-" version ".tar.gz")) (sha256 (base32 - "1dipikph0xdr8fp0h1flpafcrg60y4aabljg8fl1v92j3gxdggmw")) - (patches (search-patches "pigx-bsseq-no-citeproc.patch")))) + "1hfiignq3410dbl6f67vc6zr69abknpcgxixx475dspky2jb5lyn")))) (build-system gnu-build-system) (arguments `(;; TODO: tests currently require 12+GB of RAM. See @@ -10625,18 +10624,6 @@ in an easily configurable manner.") #:tests? #f #:phases (modify-phases %standard-phases - (add-before 'bootstrap 'autoreconf - (lambda _ - ;; This was fixed in commit - ;; d56ac732524da659afbbb0972f7a87fa178ae58e, but there is no - ;; release with this fix. - (call-with-output-file "VERSION" - (lambda (port) (display ,version port))) - ;; https://github.com/BIMSBbioinfo/pigx_bsseq/issues/181 - (substitute* "m4/ax_r_package.m4" - (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)") - "if(system.file(package=\"PKG\") == \"\")")) - (invoke "autoreconf" "-vif"))) (add-before 'configure 'set-PYTHONPATH (lambda _ (setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH")))) @@ -10648,7 +10635,7 @@ in an easily configurable manner.") (search-input-directory inputs "share/zoneinfo"))))))) (native-inputs - (list tzdata automake autoconf)) + (list tzdata)) (inputs (list coreutils sed |