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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-07-27 10:17:42 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-08-01 15:14:47 +0200 |
| commit | 8d7a7214001967dd3b8732acc04da87a5687c91b (patch) | |
| tree | d732a1bc8a30c859d7c1f807fbf433991987484f /gnu/packages/bioinformatics.scm | |
| parent | b8df15b748024128e09cebb4d7ebae42be5df788 (diff) | |
| download | guix-8d7a7214001967dd3b8732acc04da87a5687c91b.tar guix-8d7a7214001967dd3b8732acc04da87a5687c91b.tar.gz | |
gnu: Add r-millefy.
* gnu/packages/bioinformatics.scm (r-millefy): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 36 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4a8a743eba..edbae757e2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11,7 +11,7 @@ ;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com> ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com> -;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> +;;; Copyright © 2018, 2019, 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com> ;;; Copyright © 2019 Brett Gilio <brettg@gnu.org> @@ -7525,6 +7525,41 @@ of transcriptional heterogeneity among single cells.") ;; See https://github.com/hms-dbmi/scde/issues/38 (license license:gpl2))) +(define-public r-millefy + (package + (name "r-millefy") + (version "0.1.9-beta") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yuifu/millefy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0z2y0x99f761pxvg6n37cmnyrnj699jhjk43pvk05sa86iykgizl")))) + (properties `((upstream-name . "millefy"))) + (build-system r-build-system) + (propagated-inputs + (list r-data-table + r-destiny + r-dplyr + r-genomicranges + r-iranges + r-magrittr + r-rsamtools + r-rtracklayer + r-tidyr)) + (home-page "https://github.com/yuifu/millefy") + (synopsis "Make millefy plot with single-cell RNA-seq data") + (description "@code{Millefy} is a tool for visualizing read coverage of +@dfn{scRNA-seq}(single-cell RNA sequencing) datasets in genomic contexts. By +dynamically and automatically reorder single cells based on locus-specific +pseudo time, @code{Millefy} highlights cell-to-cell heterogeneity in read coverage +of scRNA-seq data.") + (license license:expat))) + (define-public r-misha (package (name "r-misha") |