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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-12-07 16:44:23 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-09 12:12:48 +0100 |
| commit | 4617cc7fd509cc73703e5b273c634f995bb69a5d (patch) | |
| tree | c081999937b6c7e533600ce5805cbfaa94673af6 /gnu/packages/bioinformatics.scm | |
| parent | 7601015fc9d51a2f2ecdd676bcae51ed7121d30d (diff) | |
| download | guix-4617cc7fd509cc73703e5b273c634f995bb69a5d.tar guix-4617cc7fd509cc73703e5b273c634f995bb69a5d.tar.gz | |
gnu: r-rhtslib: Propagate zlib.
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 13 |
1 files changed, 1 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9cf5c0acab..9edf75a82c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7980,8 +7980,6 @@ CAGE.") "1sl0l6v05lfglj281nszma0h5k234md7rn2pdah8vs2d4iq3kimw")))) (properties `((upstream-name . "VariantAnnotation"))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) ("r-biobase" ,r-biobase) @@ -8260,8 +8258,6 @@ biological sequences or sets of sequences.") (substitute* "NAMESPACE" (("import\\(zlibbioc\\)") "")) #t))))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-biocgenerics" ,r-biocgenerics) ("r-biocparallel" ,r-biocparallel) @@ -8794,9 +8790,8 @@ secondary structure and comparative analysis in R.") (arguments '(#:configure-flags '("--no-staged-install"))) (propagated-inputs `(("curl" ,curl) + ("zlib" ,zlib) ; packages using rhtslib need to link with zlib ("r-zlibbioc" ,r-zlibbioc))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("pkg-config" ,pkg-config) ("r-knitr" ,r-knitr))) @@ -8827,8 +8822,6 @@ of other R packages who wish to make use of HTSlib.") ("r-rcpp" ,r-rcpp) ("r-rhtslib" ,r-rhtslib) ("r-zlibbioc" ,r-zlibbioc))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/bamsignals") @@ -9127,8 +9120,6 @@ HDF5 datasets.") (propagated-inputs `(("r-rhdf5filters" ,r-rhdf5filters) ("r-rhdf5lib" ,r-rhdf5lib))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/rhdf5") @@ -9616,8 +9607,6 @@ number detection tools.") ("r-zlibbioc" ,r-zlibbioc))) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes - (inputs - `(("zlib" ,zlib))) (home-page "https://github.com/al2na/methylKit") (synopsis "DNA methylation analysis from high-throughput bisulfite sequencing results") |