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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-01-17 13:25:37 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-01-22 08:56:51 +0100 |
| commit | b374a45eb0468189140c19b5cebcf8282eb6c20a (patch) | |
| tree | d37eb502c6efc53e4a5cd353e2240a5679141430 /gnu/packages/bioconductor.scm | |
| parent | a46f753051b85464c833402895cb10fce05ea296 (diff) | |
| download | guix-b374a45eb0468189140c19b5cebcf8282eb6c20a.tar guix-b374a45eb0468189140c19b5cebcf8282eb6c20a.tar.gz | |
gnu: Add r-speaq.
* gnu/packages/bioconductor.scm (r-speaq): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 42 |
1 files changed, 41 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6f2c7380fb..343a500fc3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7,7 +7,7 @@ ;;; Copyright © 2017, 2018, 2019, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019, 2020, 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com> -;;; Copyright © 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> +;;; Copyright © 2020-2023 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com> @@ -7843,6 +7843,46 @@ events and allows for the incorporation of prior knowledge through supervised graph construction.") (license license:artistic2.0))) +;; This is a CRAN package but it depends on a bionconductor package. +(define-public r-speaq + (package + (name "r-speaq") + (version "2.7.0") + (source (origin + (method url-fetch) + (uri (cran-uri "speaq" version)) + (sha256 + (base32 + "0z9a3nbfazphp090c6hg892vjq7jp4g4cij3s5wbs1q567inbmlk")))) + (properties `((upstream-name . "speaq"))) + (build-system r-build-system) + (propagated-inputs + (list r-cluster + r-data-table + r-dosnow + r-foreach + r-ggplot2 + r-gridextra + r-impute + r-massspecwavelet + r-missforest + r-reshape2 + r-rfast + r-rvest + r-xml2)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=speaq") + (synopsis "Tools for nuclear magnetic resonance spectra alignment") + (description + "This package helps with @acronym{NMR, Nuclear Magnetic Resonance} spectroscopy +data analysis as easy as possible. It only requires a small set of functions to +perform an entire analysis. Speaq offers the possibility of raw spectra alignment +and quantitation but also an analysis based on features whereby the spectra are +converted to peaks which are then grouped and turned into features. These features +can be processed with any number of statistical tools either included in speaq +or available elsewhere on CRAN.") + (license license:asl2.0))) + (define-public r-stager (package (name "r-stager") |