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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-29 22:30:47 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-30 08:55:45 +0100 |
| commit | 98a2af31a8066eff780a71a6366749cad5d3d580 (patch) | |
| tree | 943d49afa6601a22bc963bfb1b05e7ce415758b7 /gnu/packages/bioconductor.scm | |
| parent | 59cf26292f8aa13c4a98687371a2dafa63ccc932 (diff) | |
| download | guix-98a2af31a8066eff780a71a6366749cad5d3d580.tar guix-98a2af31a8066eff780a71a6366749cad5d3d580.tar.gz | |
gnu: Add r-yarn.
* gnu/packages/bioconductor.scm (r-yarn): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6b11b47eae..b0c1fb08bf 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3879,3 +3879,38 @@ Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.") (license license:gpl3+))) + +(define-public r-yarn + (package + (name "r-yarn") + (version "1.8.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "yarn" version)) + (sha256 + (base32 + "0c84x1zq34hadpsyaa873r8kg0jcxp09c2z63377hlmhsll90l7s")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biomart" ,r-biomart) + ("r-downloader" ,r-downloader) + ("r-edger" ,r-edger) + ("r-gplots" ,r-gplots) + ("r-limma" ,r-limma) + ("r-matrixstats" ,r-matrixstats) + ("r-preprocesscore" ,r-preprocesscore) + ("r-quantro" ,r-quantro) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-readr" ,r-readr))) + (home-page "https://bioconductor.org/packages/yarn/") + (synopsis "Robust multi-condition RNA-Seq preprocessing and normalization") + (description + "Expedite large RNA-Seq analyses using a combination of previously +developed tools. YARN is meant to make it easier for the user in performing +basic mis-annotation quality control, filtering, and condition-aware +normalization. YARN leverages many Bioconductor tools and statistical +techniques to account for the large heterogeneity and sparsity found in very +large RNA-seq experiments.") + (license license:artistic2.0))) |