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| author | zimoun <zimon.toutoune@gmail.com> | 2019-10-08 19:35:16 +0200 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2019-10-15 14:10:21 +0200 |
| commit | 16e2e4f27b4d6c3d58b9ba029c923994cdf9c140 (patch) | |
| tree | 359a92cc847ce49c07d197242ee786b4e4184613 /gnu/packages/bioconductor.scm | |
| parent | 8ba94edd8f411d68338d6d063dc09cda6858b748 (diff) | |
| download | guix-16e2e4f27b4d6c3d58b9ba029c923994cdf9c140.tar guix-16e2e4f27b4d6c3d58b9ba029c923994cdf9c140.tar.gz | |
gnu: Add r-htqpcr.
* gnu/packages/bioconductor.scm (r-htqpcr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bb28493935..dc06bcb52d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2019 Simon Tournier <zimon.toutoune@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -6078,3 +6079,36 @@ attributable to individual, tissue, time point, or technical variables. The package includes dream differential expression analysis for repeated measures.") (license license:gpl2+))) + +(define-public r-htqpcr + (package + (name "r-htqpcr") + (version "1.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "HTqPCR" version)) + (sha256 + (base32 + "09xgj797f0qsbm4jswxw7ijjwa4jxg06bfkq66xfhbvascyyrhg7")))) + (properties `((upstream-name . "HTqPCR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-affy" ,r-affy) + ("r-biobase" ,r-biobase) + ("r-gplots" ,r-gplots) + ("r-limma" ,r-limma) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "http://www.ebi.ac.uk/bertone/software") + (synopsis "Automated analysis of high-throughput qPCR data") + (description + "Analysis of Ct values from high throughput quantitative real-time +PCR (qPCR) assays across multiple conditions or replicates. The input data +can be from spatially-defined formats such ABI TaqMan Low Density Arrays or +OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad +Laboratories; conventional 96- or 384-well plates; or microfluidic devices +such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data +loading, quality assessment, normalization, visualization and parametric or +non-parametric testing for statistical significance in Ct values between +features (e.g. genes, microRNAs).") + (license license:artistic2.0))) |