diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2019-09-15 20:53:27 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-09-15 20:53:27 +0200 |
| commit | 4ca2d6c1a6e64d7f64410d752140cec3063b9eca (patch) | |
| tree | 4e8b48658a101df2e44640193369cae1ed77b0f6 /gnu/packages/bioconductor.scm | |
| parent | 5094aa94724fd2111dbd7520ab2f21a4218523ae (diff) | |
| download | guix-4ca2d6c1a6e64d7f64410d752140cec3063b9eca.tar guix-4ca2d6c1a6e64d7f64410d752140cec3063b9eca.tar.gz | |
gnu: Add r-affycontam.
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 83f8343524..37a3b776e9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1030,6 +1030,31 @@ provides access to @dfn{GeneChip Operating System} (GCOS) and @dfn{GeneChip Command Console} (AGCC)-compatible sample annotation files.") (license license:artistic2.0))) +(define-public r-affycontam + (package + (name "r-affycontam") + (version "1.42.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affyContam" version)) + (sha256 + (base32 + "0nzk1cm26rhmym753wyhn35hqnz5lvavi3i5qfgdvhxgjy3m1jgp")))) + (properties `((upstream-name . "affyContam"))) + (build-system r-build-system) + (propagated-inputs + `(("r-affy" ,r-affy) + ("r-affydata" ,r-affydata) + ("r-biobase" ,r-biobase))) + (home-page "https://bioconductor.org/packages/affyContam/") + (synopsis "Structured corruption of Affymetrix CEL file data") + (description + "Microarray quality assessment is a major concern of microarray analysts. +This package provides some simple approaches to in silico creation of quality +problems in CEL-level data to help evaluate performance of quality metrics.") + (license license:artistic2.0))) + (define-public r-annotate (package (name "r-annotate") |