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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:30:30 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:30:30 +0100
commit0c792ffbd1fe52533676a501bfc54c2a33a69351 (patch)
treef64ef5b6adbc4819cfcf2378dadcc1372a58ee75 /gnu/packages/bioconductor.scm
parentb7d93cf5087642103ae4a1f19ae38876d46c2b6c (diff)
downloadguix-0c792ffbd1fe52533676a501bfc54c2a33a69351.tar
guix-0c792ffbd1fe52533676a501bfc54c2a33a69351.tar.gz
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 24504d0514..44864c2c6d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -65,6 +65,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-celegans-ucsc-ce10
+ (package
+ (name "r-bsgenome-celegans-ucsc-ce10")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Celegans.UCSC.ce10_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
+ (properties
+ `((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
+ (synopsis "Full genome sequences for Worm")
+ (description
+ "This package provides full genome sequences for Caenorhabditis
+elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm6")