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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-29 20:28:38 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-30 08:55:45 +0100 |
| commit | 28098414d0e1455110b9ee8a500255f93dc34e20 (patch) | |
| tree | 2778a6d8297cf94921c7093fa177f237cb1c6ce2 /gnu/packages/bioconductor.scm | |
| parent | 398c4a93471067698efc965d4de03d66b2b9738e (diff) | |
| download | guix-28098414d0e1455110b9ee8a500255f93dc34e20.tar guix-28098414d0e1455110b9ee8a500255f93dc34e20.tar.gz | |
gnu: Add r-somaticsignatures.
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d3ffd41a3c..78fd5a989b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3685,3 +3685,40 @@ dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.") (license license:expat))) + +(define-public r-somaticsignatures + (package + (name "r-somaticsignatures") + (version "2.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "SomaticSignatures" version)) + (sha256 + (base32 + "013dslbyq55a41d3n842brjk2bq1kxw0r18mb6drgbxx2sflzc02")))) + (properties + `((upstream-name . "SomaticSignatures"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biostrings" ,r-biostrings) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-ggbio" ,r-ggbio) + ("r-ggplot2" ,r-ggplot2) + ("r-iranges" ,r-iranges) + ("r-nmf" ,r-nmf) + ("r-pcamethods" ,r-pcamethods) + ("r-proxy" ,r-proxy) + ("r-reshape2" ,r-reshape2) + ("r-s4vectors" ,r-s4vectors) + ("r-variantannotation" ,r-variantannotation))) + (home-page "https://github.com/juliangehring/SomaticSignatures") + (synopsis "Somatic signatures") + (description + "This package identifies mutational signatures of @dfn{single nucleotide +variants} (SNVs). It provides a infrastructure related to the methodology +described in Nik-Zainal (2012, Cell), with flexibility in the matrix +decomposition algorithms.") + (license license:expat))) |