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authorzimoun <zimon.toutoune@gmail.com>2020-12-23 19:06:29 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-29 17:40:28 +0100
commit9534e7b7061f672d4b8a0d4cafd3b1be7908a613 (patch)
treee554adf2266bda8f808bec3a3f708c1d797d5827 /gnu/packages/bioconductor.scm
parent2a4322f7c34b3cf81ae3ff39527404c22e68399a (diff)
downloadguix-9534e7b7061f672d4b8a0d4cafd3b1be7908a613.tar
guix-9534e7b7061f672d4b8a0d4cafd3b1be7908a613.tar.gz
gnu: r-gqtlstats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here... * gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm56
1 files changed, 56 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 11e9a46b11..1bf9a49272 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9241,6 +9241,62 @@ preprocessing of cytometry data, including i) normalization using bead
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+)))
+(define-public r-gqtlstats
+ (package
+ (name "r-gqtlstats")
+ (version "1.21.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gQTLstats" version))
+ (sha256
+ (base32
+ "1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl"))))
+ (properties `((upstream-name . "gQTLstats")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-batchjobs" ,r-batchjobs)
+ ("r-bbmisc" ,r-bbmisc)
+ ("r-beeswarm" ,r-beeswarm)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-doparallel" ,r-doparallel)
+ ("r-dplyr" ,r-dplyr)
+ ("r-erma" ,r-erma)
+ ("r-ffbase" ,r-ffbase)
+ ("r-foreach" ,r-foreach)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggbeeswarm" ,r-ggbeeswarm)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gqtlbase" ,r-gqtlbase)
+ ("r-hardyweinberg" ,r-hardyweinberg)
+ ("r-homo-sapiens" ,r-homo-sapiens)
+ ("r-iranges" ,r-iranges)
+ ("r-limma" ,r-limma)
+ ("r-mgcv" ,r-mgcv)
+ ("r-plotly" ,r-plotly)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shiny" ,r-shiny)
+ ("r-snpstats" ,r-snpstats)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/gQTLstats")
+ (synopsis "Computationally efficient analysis for eQTL and allied studies")
+ (description
+ "This package provides tools for the computationally efficient analysis
+of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc.
+The software in this package aims to support refinements and functional
+interpretation of members of a collection of association statistics on a
+family of feature/genome hypotheses.")
+ (license license:artistic2.0)))
+
(define-public r-gviz
(package
(name "r-gviz")