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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-12-07 16:44:23 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-09 12:12:48 +0100 |
| commit | 4617cc7fd509cc73703e5b273c634f995bb69a5d (patch) | |
| tree | c081999937b6c7e533600ce5805cbfaa94673af6 /gnu/packages/bioconductor.scm | |
| parent | 7601015fc9d51a2f2ecdd676bcae51ed7121d30d (diff) | |
| download | guix-4617cc7fd509cc73703e5b273c634f995bb69a5d.tar guix-4617cc7fd509cc73703e5b273c634f995bb69a5d.tar.gz | |
gnu: r-rhtslib: Propagate zlib.
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 12 |
1 files changed, 0 insertions, 12 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 5f524f310c..5a3d638434 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1726,8 +1726,6 @@ signal in the input, that lead to spurious peaks during peak calling.") "0irhqsi6rrkrkc7dhwmfpqfd0mnigs17027czcx8vgbrbra4lcvd")))) (properties `((upstream-name . "DiffBind"))) (build-system r-build-system) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-amap" ,r-amap) ("r-apeglm" ,r-apeglm) @@ -5664,8 +5662,6 @@ index.") "032m01q34nnmvbhcb2g3pz2fqmgcw5464m74m1m0h7x9bl04a5k8")))) (properties `((upstream-name . "QuasR"))) (build-system r-build-system) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) ("r-biobase" ,r-biobase) @@ -6049,8 +6045,6 @@ cluster count and membership by stability evidence in unsupervised analysis.") (("\\(RHDF5_LIBS\\)" match) (string-append match "/libhdf5.a"))) #t))))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("r-knitr" ,r-knitr) ("pkg-config" ,pkg-config))) @@ -6150,8 +6144,6 @@ change point detection.") (("\\(RHDF5_LIBS\\)" match) (string-append match "/libhdf5.a"))) #t))))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-bh" ,r-bh) ("r-biobase" ,r-biobase) @@ -6332,8 +6324,6 @@ for other R packages to compile and link against.") (("\\{h5lib\\}" match) (string-append match "/libhdf5.a"))) #t))))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-aws-s3" ,r-aws-s3) ("r-aws-signature" ,r-aws-signature) @@ -6997,8 +6987,6 @@ with multiple R processes supported by the package @code{parallel}.") `(("r-biostrings" ,r-biostrings) ("r-genomicranges" ,r-genomicranges) ("r-rhtslib" ,r-rhtslib))) - (inputs - `(("zlib" ,zlib))) ; This comes from rhtslib. (home-page "https://bioconductor.org/packages/seqbias/") (synopsis "Estimation of per-position bias in high-throughput sequencing data") (description |