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authorRicardo Wurmus <rekado@elephly.net>2019-01-12 23:07:29 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-01-12 23:35:19 +0100
commitcad6fb2dec67e41498ee4cf9026ea5d12d8050e6 (patch)
tree1ab8e57a7ba46ea1945740d5251b4db43f4db07e /gnu/packages/bioconductor.scm
parent45dcd7dcfd1dcfa7cacd0e7d996bc5fa04891fed (diff)
downloadguix-cad6fb2dec67e41498ee4cf9026ea5d12d8050e6.tar
guix-cad6fb2dec67e41498ee4cf9026ea5d12d8050e6.tar.gz
gnu: Add r-plgem.
* gnu/packages/bioconductor.scm (r-plgem): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 06dc258005..0ded2a7b67 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -852,6 +852,31 @@ information.")
in omics data.")
(license license:gpl2+)))
+(define-public r-plgem
+ (package
+ (name "r-plgem")
+ (version "1.54.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "plgem" version))
+ (sha256
+ (base32
+ "1330635db3p8xm5y8fwrk1l37r6bgypsq70s3rx954i775zp6szg"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-mass" ,r-mass)))
+ (home-page "http://www.genopolis.it")
+ (synopsis "Detect differential expression in microarray and proteomics datasets")
+ (description
+ "The Power Law Global Error Model (PLGEM) has been shown to faithfully
+model the variance-versus-mean dependence that exists in a variety of
+genome-wide datasets, including microarray and proteomics data. The use of
+PLGEM has been shown to improve the detection of differentially expressed
+genes or proteins in these datasets.")
+ (license license:gpl2)))
+
(define-public r-inspect
(package
(name "r-inspect")