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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2018-08-16 16:48:39 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-08-16 17:04:13 +0200
commitb64ce4b72564b45a422f4e7ffc30a5b95de91cff (patch)
treecb074141335fe3fef0fa17904634c692243bfe4c /gnu/packages/bioconductor.scm
parentcea4d360d4b21c1dc27c9ec676bc08830f600c61 (diff)
downloadguix-b64ce4b72564b45a422f4e7ffc30a5b95de91cff.tar
guix-b64ce4b72564b45a422f4e7ffc30a5b95de91cff.tar.gz
gnu: Add r-inspect.
* gnu/packages/bioconductor.scm (r-inspect): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm37
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index dfb0fe6d5a..7e993189d6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28,6 +28,7 @@
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
#:use-module (gnu packages graph)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages statistics)
#:use-module (gnu packages web))
@@ -802,3 +803,39 @@ information.")
@dfn{Reproducibility-Optimized Test Statistic} (ROTS) for differential testing
in omics data.")
(license license:gpl2+)))
+
+(define-public r-inspect
+ (package
+ (name "r-inspect")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "INSPEcT" version))
+ (sha256
+ (base32
+ "1gk0pwyimkswrvgb2xr3c2zy4myi448a2shr5ap65rq9pcpp0l8p"))))
+ (properties `((upstream-name . "INSPEcT")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-desolve" ,r-desolve)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-proc" ,r-proc)
+ ("r-rootsolve" ,r-rootsolve)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/INSPEcT")
+ (synopsis "Analysis of 4sU-seq and RNA-seq time-course data")
+ (description
+ "INSPEcT (INference of Synthesis, Processing and dEgradation rates in
+Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in
+order to evaluate synthesis, processing and degradation rates and assess via
+modeling the rates that determines changes in mature mRNA levels.")
+ (license license:gpl2)))