aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2022-04-14 13:34:11 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-04-14 13:34:11 +0200
commitaafd0d2309a7f27dc0f724f682c4faede41cf6c2 (patch)
tree74c67a31061c6172a8ced0a28f9a3299cb432bad /gnu/packages/bioconductor.scm
parented3697c040da3baf03a94fdac98e6a1a188c13d6 (diff)
downloadguix-aafd0d2309a7f27dc0f724f682c4faede41cf6c2.tar
guix-aafd0d2309a7f27dc0f724f682c4faede41cf6c2.tar.gz
gnu: r-absseq: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments section.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm58
1 files changed, 29 insertions, 29 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 61fa6bfde2..ecb188a84f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1102,35 +1102,6 @@ datasets which are derived from the Allen Brain Atlas:
All datasets are restricted to protein coding genes.")
(license license:gpl2+)))
-(define-public r-absseq
- (package
- (name "r-absseq")
- (version "1.48.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "ABSSeq" version))
- (sha256
- (base32
- "0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"))))
- (properties `((upstream-name . "ABSSeq")))
- (build-system r-build-system)
- (propagated-inputs (list r-limma r-locfit))
- (home-page "https://bioconductor.org/packages/ABSSeq")
- (synopsis
- "RNA-Seq analysis based on modelling absolute expression differences")
- (description
- "This package implements a new RNA-Seq analysis method and integrates two
-modules: a basic model for pairwise comparison and a linear model for complex
-design. RNA-Seq quantifies gene expression with reads count, which usually
-consists of conditions (or treatments) and several replicates for each
-condition. This software infers differential expression directly by the
-counts difference between conditions. It assumes that the sum counts
-difference between conditions follow a negative binomial distribution. In
-addition, @code{ABSSeq} moderates the fold-changes by two steps: the
-expression level and gene-specific dispersion, that might facilitate the gene
-ranking by fold-change and visualization.")
- (license license:gpl3+)))
-
(define-public r-aneufinderdata
(package
(name "r-aneufinderdata")
@@ -1545,6 +1516,35 @@ raw data, processed data, graphics output and statistical results are organized
into folders according to the analysis settings used.")
(license license:gpl2+)))
+(define-public r-absseq
+ (package
+ (name "r-absseq")
+ (version "1.48.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ABSSeq" version))
+ (sha256
+ (base32
+ "0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"))))
+ (properties `((upstream-name . "ABSSeq")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-limma r-locfit))
+ (home-page "https://bioconductor.org/packages/ABSSeq")
+ (synopsis
+ "RNA-Seq analysis based on modelling absolute expression differences")
+ (description
+ "This package implements a new RNA-Seq analysis method and integrates two
+modules: a basic model for pairwise comparison and a linear model for complex
+design. RNA-Seq quantifies gene expression with reads count, which usually
+consists of conditions (or treatments) and several replicates for each
+condition. This software infers differential expression directly by the
+counts difference between conditions. It assumes that the sum counts
+difference between conditions follow a negative binomial distribution. In
+addition, @code{ABSSeq} moderates the fold-changes by two steps: the
+expression level and gene-specific dispersion, that might facilitate the gene
+ranking by fold-change and visualization.")
+ (license license:gpl3+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")