diff options
| author | zimoun <zimon.toutoune@gmail.com> | 2021-03-15 14:01:32 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-03-15 14:05:47 +0100 |
| commit | 8d6d75ff392af1d2633a2ffc07f29c5c1da0071c (patch) | |
| tree | 35bd532020346135fb4c5198d6a43d20bc1eef85 | |
| parent | 9949f459bff3980f59db8925a90891577e4f91d6 (diff) | |
| download | guix-8d6d75ff392af1d2633a2ffc07f29c5c1da0071c.tar guix-8d6d75ff392af1d2633a2ffc07f29c5c1da0071c.tar.gz | |
gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here.
[source]: Use 'bioconductor-uri'.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 20 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
2 files changed, 20 insertions, 23 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 68c5ed7768..53f025ec61 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3,6 +3,7 @@ ;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> +;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com> @@ -391,6 +392,25 @@ musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-genomeinfodbdata + (package + (name "r-genomeinfodbdata") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "GenomeInfoDbData" version 'annotation)) + (sha256 + (base32 + "0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c")))) + (properties + `((upstream-name . "GenomeInfoDbData"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/GenomeInfoDbData") + (synopsis "Species and taxonomy ID look up tables for GenomeInfoDb") + (description "This package contains data for mapping between NCBI taxonomy +ID and species. It is used by functions in the GenomeInfoDb package.") + (license license:artistic2.0))) + (define-public r-homo-sapiens (package (name "r-homo-sapiens") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 36ecf47467..25ade2b9db 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7691,29 +7691,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-genomeinfodbdata - (package - (name "r-genomeinfodbdata") - (version "1.2.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://bioconductor.org/packages/release/" - "data/annotation/src/contrib/GenomeInfoDbData_" - version ".tar.gz")) - (sha256 - (base32 - "0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c")))) - (properties - `((upstream-name . "GenomeInfoDbData"))) - (build-system r-build-system) - (home-page "https://bioconductor.org/packages/GenomeInfoDbData") - (synopsis "Species and taxonomy ID look up tables for GenomeInfoDb") - (description "This package contains data for mapping between NCBI taxonomy -ID and species. It is used by functions in the GenomeInfoDb package.") - (license license:artistic2.0))) - (define-public r-genomeinfodb (package (name "r-genomeinfodb") |