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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-05-02 10:13:08 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-05-02 10:14:37 +0200 |
| commit | 62ed97c07d83f58fb051a77b6d3b79b54e579e09 (patch) | |
| tree | c4e9e11b70f7238a1ace7b03539cfbc5d526b1b5 | |
| parent | 854c57c3525325070e261a2e6f81d4016ef44bfa (diff) | |
| download | guix-62ed97c07d83f58fb051a77b6d3b79b54e579e09.tar guix-62ed97c07d83f58fb051a77b6d3b79b54e579e09.tar.gz | |
gnu: Add r-lefser.
* gnu/packages/bioconductor.scm (r-lefser): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 190cadcc97..31bd4e24b0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12320,6 +12320,29 @@ background correction, and quality control features for GoldenGate, Infinium, and Infinium HD arrays are also included.") (license license:gpl2))) +(define-public r-lefser + (package + (name "r-lefser") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "lefser" version)) + (sha256 + (base32 + "0wi70b4k7s0xj7bh46s0x0fckqc5qspzq8k4k913vg6cnhqgw2dd")))) + (properties `((upstream-name . "lefser"))) + (build-system r-build-system) + (propagated-inputs (list r-coin r-ggplot2 r-mass r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/waldronlab/lefser") + (synopsis "LEfSE method for microbiome biomarker discovery") + (description + "Lefser is an implementation in R of the popular \"LDA Effect +Size\" (LEfSe) method for microbiome biomarker discovery. It uses the +Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis +to find biomarkers of groups and sub-groups.") + (license license:artistic2.0))) + (define-public r-lumi (package (name "r-lumi") |