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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-12-05 18:27:26 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-12 15:50:28 +0100 |
| commit | 5fb5af5658b7575a945579a7cf51c193600b76bb (patch) | |
| tree | 7599a7315aaeb15f4547e10250872bb4d1f878ec | |
| parent | 84392cd0246ac0b5c6e5e9a6ff85130fc766ef26 (diff) | |
| download | guix-5fb5af5658b7575a945579a7cf51c193600b76bb.tar guix-5fb5af5658b7575a945579a7cf51c193600b76bb.tar.gz | |
gnu: Add r-amplican.
* gnu/packages/bioconductor.scm (r-amplican): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 07f8f658f4..85c07605ca 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2202,6 +2202,53 @@ conditions or various species. @code{AMOUNTAIN} aims to search active modules in multi-layer WGCN using a continuous optimization approach.") (license license:gpl2+))) +(define-public r-amplican + (package + (name "r-amplican") + (version "1.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "amplican" version)) + (sha256 + (base32 + "1c990i6gxbarcpbdpkz017x94spwzap95l95synlizbkyif4z8ij")))) + (properties `((upstream-name . "amplican"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biocparallel + r-biostrings + r-clustercrit + r-data-table + r-dplyr + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-ggthemes + r-gridextra + r-gtable + r-iranges + r-knitr + r-matrix + r-matrixstats + r-rcpp + r-rmarkdown + r-s4vectors + r-shortread + r-stringr + r-waffle)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/valenlab/amplican") + (synopsis "Automated analysis of CRISPR experiments") + (description + "The package performs alignment of the amplicon reads, normalizes +gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) +and presents the results in the form of aggregated reports. Data and +statistics can be broken down by experiments, barcodes, user defined groups, +guides and amplicons allowing for quick identification of potential +problems.") + (license license:gpl3))) + (define-public r-amaretto (package (name "r-amaretto") |