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authorRicardo Wurmus <rekado@elephly.net>2018-06-15 07:38:27 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-06-15 07:43:23 +0200
commit6ffdfe6a0121f6e9e6029ef16d1653afc49628d8 (patch)
treebf9af1e71609d51f3c9390a8ecf2d2732712c3eb
parent0490f9de88edef1947c6e047701a86bf1b37a506 (diff)
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guix-6ffdfe6a0121f6e9e6029ef16d1653afc49628d8.tar.gz
gnu: Add r-riboseqr.
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8dbbb74b3f..634493d136 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -575,3 +575,31 @@ the counting of genomic sequence reads on CDS, 3'UTR, and 5'UTR, and plotting
of count data: pairs, log fold-change, codon frequency and coverage
assessment, principal component analysis on codon coverage.")
(license license:gpl3)))
+
+(define-public r-riboseqr
+ (package
+ (name "r-riboseqr")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "riboSeqR" version))
+ (sha256
+ (base32
+ "0xavd1cdhi8qfjn9a1hjhflyg6jq1ydvv56z12gjz572pwz2knvn"))))
+ (properties `((upstream-name . "riboSeqR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-bayseq" ,r-bayseq)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-seqlogo" ,r-seqlogo)))
+ (home-page "https://bioconductor.org/packages/riboSeqR/")
+ (synopsis "Analysis of sequencing data from ribosome profiling experiments")
+ (description
+ "This package provides plotting functions, frameshift detection and
+parsing of genetic sequencing data from ribosome profiling experiments.")
+ (license license:gpl3)))