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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-12-18 12:08:22 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-12-21 17:22:16 +0100
commit0e7d5560decaa9c474a8fbf001b270dcc5bf5a6b (patch)
treefc4cffd89ba3c191fd2086ffa70034c539232655
parentbf7764b74f6052bbb977b869efdcfbb8b6e9e588 (diff)
downloadguix-0e7d5560decaa9c474a8fbf001b270dcc5bf5a6b.tar
guix-0e7d5560decaa9c474a8fbf001b270dcc5bf5a6b.tar.gz
gnu: Add XVector.
* gnu/packages/bioinformatics.scm (r-xvector): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm37
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f4679cf9d4..7a05d639fb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3272,6 +3272,43 @@ translation between different chromosome sequence naming conventions (e.g.,
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
+(define-public r-xvector
+ (package
+ (name "r-xvector")
+ (version "0.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "XVector" version))
+ (sha256
+ (base32
+ "0havwyr6xqk7w0rmbwfj9jq1djz7wzdz7w39adhklwzwz9l4ih3a"))))
+ (properties
+ `((upstream-name . "XVector")
+ (r-repository . bioconductor)))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'use-system-zlib
+ (lambda _
+ (substitute* "DESCRIPTION"
+ (("zlibbioc, ") ""))
+ (substitute* "NAMESPACE"
+ (("import\\(zlibbioc\\)") ""))
+ #t)))))
+ (inputs
+ `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://bioconductor.org/packages/XVector")
+ (synopsis "Representation and manpulation of external sequences")
+ (description
+ "This package provides memory efficient S4 classes for storing sequences
+\"externally\" (behind an R external pointer, or on disk).")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")