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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2018-08-14 11:10:52 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-08-14 11:29:17 +0200
commit242519ce7025bf09c3ba541faac6060eda52921d (patch)
tree48de1c2c6b31fd3ee336a17a2c773faba5bcce82
parent4646d18eb769691224d25ead7da416b5f8783529 (diff)
downloadguix-242519ce7025bf09c3ba541faac6060eda52921d.tar
guix-242519ce7025bf09c3ba541faac6060eda52921d.tar.gz
gnu: Add r-circus.
* gnu/packages/bioinformatics.scm (r-circus): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm42
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fe75744a28..5184a2916a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13275,6 +13275,48 @@ cases include:
@end enumerate\n")
(license license:expat)))
+(define-public r-circus
+ (package
+ (name "r-circus")
+ (version "0.1.5")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BIMSBbioinfo/ciRcus.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0jhjn3ilb057hbf6yzrihj13ifxxs32y7nkby8l3lkm28dg4p97h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-annotationhub" ,r-annotationhub)
+ ("r-biomart" ,r-biomart)
+ ("r-data-table" ,r-data-table)
+ ("r-dbi" ,r-dbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-hash" ,r-hash)
+ ("r-iranges" ,r-iranges)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rmysql" ,r-rmysql)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-stringr" ,r-stringr)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/BIMSBbioinfo/ciRcus")
+ (synopsis "Annotation, analysis and visualization of circRNA data")
+ (description "Circus is an R package for annotation, analysis and
+visualization of circRNA data. Users can annotate their circRNA candidates
+with host genes, gene featrues they are spliced from, and discriminate between
+known and yet unknown splice junctions. Circular-to-linear ratios of circRNAs
+can be calculated, and a number of descriptive plots easily generated.")
+ (license license:artistic2.0)))
+
(define-public r-loomr
(let ((commit "df0144bd2bbceca6fadef9edc1bbc5ca672d4739")
(revision "1"))