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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-04-16 15:16:57 +0200
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-04-21 17:57:22 +0200
commit9794180d5e0c100a9d6094f8b91c7711b026c253 (patch)
treeaa1ccdc7317ee95ae8662e50fdcf22a67bb9c9c4
parentdbf4ed7c91adf3ebbc45f00a9f24a5f1647e570e (diff)
downloadguix-9794180d5e0c100a9d6094f8b91c7711b026c253.tar
guix-9794180d5e0c100a9d6094f8b91c7711b026c253.tar.gz
gnu: Add bamtools.
* gnu/packages/bioinformatics.scm (bamtools): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7fc6af3c4e..950f9b472f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -46,6 +46,29 @@
#:use-module (gnu packages xml)
#:use-module (gnu packages zip))
+(define-public bamtools
+ (package
+ (name "bamtools")
+ (version "2.3.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/pezmaster31/bamtools/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1brry29bw2xr2l9pqn240rkqwayg85b8qq78zk2zs6nlspk4d018"))))
+ (build-system cmake-build-system)
+ (arguments `(#:tests? #f)) ;no "check" target
+ (inputs `(("zlib" ,zlib)))
+ (home-page "https://github.com/pezmaster31/bamtools")
+ (synopsis "C++ API and command-line toolkit for working with BAM data")
+ (description
+ "BamTools provides both a C++ API and a command-line toolkit for handling
+BAM files.")
+ (license license:expat)))
+
(define-public bedops
(package
(name "bedops")