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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2017-01-04 16:25:19 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-01-06 16:31:02 +0100
commit6193563a3648ae1732aa10939c8e9bf1b7e3a71d (patch)
tree9087276d12abf8c532392e9e4fe0d1093398b329
parent974e02da76776f99f7b6a4764dd46e4c131c0de7 (diff)
downloadguix-6193563a3648ae1732aa10939c8e9bf1b7e3a71d.tar
guix-6193563a3648ae1732aa10939c8e9bf1b7e3a71d.tar.gz
gnu: Add r-chipseq.
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 26 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f8d7304b72..98d9f92e37 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@@ -7869,3 +7869,28 @@ replacement for strverscmp.")
samples into a single report. It contains modules for a large number of
common bioinformatics tools.")
(license license:gpl3)))
+
+(define-public r-chipseq
+ (package
+ (name "r-chipseq")
+ (version "1.24.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "chipseq" version))
+ (sha256
+ (base32
+ "115ayp82rs99iaswrx45skw1i5iacgwzz5k8rzijbp5qic0554n0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shortread" ,r-shortread)))
+ (home-page "http://bioconductor.org/packages/chipseq")
+ (synopsis "Package for analyzing ChIPseq data")
+ (description
+ "This package provides tools for processing short read data from ChIPseq
+experiments.")
+ (license license:artistic2.0)))