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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 17:18:47 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:44 +0100
commit4272000661f61969e1fe64d950e593eb56642a36 (patch)
tree58b97b97ca52fac5868924413931e70d2ca77027
parent794ff347a9ce8e5766994513b738941f9028f98a (diff)
downloadguix-4272000661f61969e1fe64d950e593eb56642a36.tar
guix-4272000661f61969e1fe64d950e593eb56642a36.tar.gz
gnu: Add r-gviz.
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm46
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8285350887..90892f1903 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10034,6 +10034,52 @@ interpretation of members of a collection of association statistics on a
family of feature/genome hypotheses.")
(license license:artistic2.0)))
+(define-public r-gviz
+ (package
+ (name "r-gviz")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Gviz" version))
+ (sha256
+ (base32
+ "1lrw65a8426wpxw975wjcaiacpp6fqa00nif1yxigyankbfs23c8"))))
+ (properties `((upstream-name . "Gviz")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biomart" ,r-biomart)
+ ("r-biostrings" ,r-biostrings)
+ ("r-biovizbase" ,r-biovizbase)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-digest" ,r-digest)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-lattice" ,r-lattice)
+ ("r-latticeextra" ,r-latticeextra)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)))
+ (home-page "https://bioconductor.org/packages/Gviz")
+ (synopsis "Plotting data and annotation information along genomic coordinates")
+ (description
+ "Genomic data analyses requires integrated visualization of known genomic
+information and new experimental data. Gviz uses the biomaRt and the
+rtracklayer packages to perform live annotation queries to Ensembl and UCSC
+and translates this to e.g. gene/transcript structures in viewports of the
+grid graphics package. This results in genomic information plotted together
+with your data.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")